3ODU_refined

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Inactive (Δ distance (Å): -1.15 docs)

MAIN TEMPLATE

CXCR4 (sequence similarity: 100%) PDB: 3ODU

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 82.6 11.4 6.0
Side-chains 82.3 10.7 7.0

Number of backbone templates: 5
Number of rotamer templates: 20

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4RWS
3ODU
4ZUD
5UIW
4XT1
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 25 - - - -
N-term 26 - - - -
N-term 27 - - - -
N-term 28 - - - -
N-term 29 - - - -
TM1 30 1.24x24 CXCR4 4RWS CXCR4 4RWS
TM1 31 1.25x25 CXCR4 4RWS CXCR4 4RWS
TM1 32 1.26x26 CXCR4 4RWS CXCR4 4RWS
TM1 33 1.27x27 CXCR4 4RWS CXCR4 4RWS
TM1 34 1.28x28 CXCR4 3ODU CXCR4 3ODU
TM1 35 1.29x29 CXCR4 3ODU CXCR4 3ODU
TM1 36 1.30x30 CXCR4 3ODU CXCR4 3ODU
TM1 37 1.31x31 CXCR4 3ODU CXCR4 3ODU
TM1 38 1.32x32 CXCR4 3ODU CXCR4 3ODU
TM1 39 1.33x33 CXCR4 3ODU CXCR4 3ODU
TM1 40 1.34x34 CXCR4 3ODU CXCR4 3ODU
TM1 41 1.35x35 CXCR4 3ODU CXCR4 3ODU
TM1 42 1.36x36 CXCR4 3ODU CXCR4 3ODU
TM1 43 1.37x37 CXCR4 3ODU CXCR4 3ODU
TM1 44 1.38x38 CXCR4 3ODU CXCR4 3ODU
TM1 45 1.39x39 CXCR4 3ODU CXCR4 3ODU
TM1 46 1.40x40 CXCR4 3ODU CXCR4 3ODU
TM1 47 1.41x41 CXCR4 3ODU CXCR4 3ODU
TM1 48 1.42x42 CXCR4 3ODU CXCR4 3ODU
TM1 49 1.43x43 CXCR4 3ODU CXCR4 3ODU
TM1 50 1.44x44 CXCR4 3ODU CXCR4 3ODU
TM1 51 1.45x45 CXCR4 3ODU CXCR4 3ODU
TM1 52 1.46x46 CXCR4 3ODU CXCR4 3ODU
TM1 53 1.47x47 CXCR4 3ODU CXCR4 3ODU
TM1 54 1.48x48 CXCR4 3ODU CXCR4 3ODU
TM1 55 1.49x49 CXCR4 3ODU CXCR4 3ODU
TM1 56 1.50x50 CXCR4 3ODU CXCR4 3ODU
TM1 57 1.51x51 CXCR4 3ODU CXCR4 3ODU
TM1 58 1.52x52 CXCR4 3ODU CXCR4 3ODU
TM1 59 1.53x53 CXCR4 3ODU CXCR4 3ODU
TM1 60 1.54x54 CXCR4 3ODU CXCR4 3ODU
TM1 61 1.55x55 CXCR4 3ODU CXCR4 3ODU
TM1 62 1.56x56 CXCR4 3ODU CXCR4 3ODU
TM1 63 1.57x57 CXCR4 3ODU CXCR4 3ODU
TM1 64 1.58x58 CXCR4 3ODU CXCR4 3ODU
TM1 65 1.59x59 CXCR4 3ODU CXCR4 3ODU
TM1 66 1.60x60 CXCR4 3ODU CXCR4 3ODU
ICL1 67 12.48x48 - - - -
ICL1 68 12.49x49 AT1 receptor 4ZUD AT1 receptor 4YAY
ICL1 69 12.50x50 AT1 receptor 4ZUD AT1 receptor 4ZUD
ICL1 70 12.51x51 - - - -
TM2 71 2.37x37 CXCR4 3ODU CXCR4 3ODU
TM2 72 2.38x38 CXCR4 3ODU CXCR4 3ODU
TM2 73 2.39x39 CXCR4 3ODU CXCR4 3ODU
TM2 74 2.40x40 CXCR4 3ODU CXCR4 3ODU
TM2 75 2.41x41 CXCR4 3ODU CXCR4 3ODU
TM2 76 2.42x42 CXCR4 3ODU CXCR4 3ODU
TM2 77 2.43x43 CXCR4 3ODU CXCR4 3ODU
TM2 78 2.44x44 CXCR4 3ODU CXCR4 3ODU
TM2 79 2.45x45 CXCR4 3ODU CXCR4 3ODU
TM2 80 2.46x46 CXCR4 3ODU CXCR4 3ODU
TM2 81 2.47x47 CXCR4 3ODU CXCR4 3ODU
TM2 82 2.48x48 CXCR4 3ODU CXCR4 3ODU
TM2 83 2.49x49 CXCR4 3ODU CXCR4 3ODU
TM2 84 2.50x50 CXCR4 3ODU CXCR4 3ODU
TM2 85 2.51x51 CXCR4 3ODU CXCR4 3ODU
TM2 86 2.52x52 CXCR4 3ODU CXCR4 3ODU
TM2 87 2.53x53 CXCR4 3ODU CXCR4 3ODU
TM2 88 2.54x54 CXCR4 3ODU CXCR4 3ODU
TM2 89 2.55x55 CXCR4 3ODU CXCR4 3ODU
TM2 90 2.56x56 CXCR4 3ODU CXCR4 3ODU
TM2 91 2.57x57 CXCR4 3ODU CXCR4 3ODU
TM2 92 2.58x58 CXCR4 3ODU CXCR4 3ODU
TM2 93 2.59x59 CXCR4 3ODU CXCR4 3ODU
TM2 94 2.60x60 CXCR4 3ODU CXCR4 3ODU
TM2 95 2.61x61 CXCR4 3ODU CXCR4 3ODU
TM2 96 2.62x62 CXCR4 3ODU CXCR4 3ODU
TM2 97 2.63x63 CXCR4 3ODU CXCR4 3ODU
TM2 98 2.64x64 CXCR4 3ODU CXCR4 3ODU
TM2 99 2.65x65 CXCR4 3ODU CXCR4 3ODU
TM2 100 2.66x66 CXCR4 3ODU CXCR4 3ODU
ECL1 101 23.49x49 CXCR4 3ODU CXCR4 3ODU
ECL1 102 23.50x50 CXCR4 3ODU CXCR4 3ODU
ECL1 103 23.51x51 CXCR4 3ODU CXCR4 3ODU
ECL1 104 23.52x52 CXCR4 3ODU CXCR4 3ODU
TM3 105 3.21x21 CXCR4 3ODU CXCR4 3ODU
TM3 106 3.22x22 CXCR4 3ODU CXCR4 3ODU
TM3 107 3.23x23 CXCR4 3ODU CXCR4 3ODU
TM3 108 3.24x24 CXCR4 3ODU CXCR4 3ODU
TM3 109 3.25x25 CXCR4 3ODU CXCR4 3ODU
TM3 110 3.26x26 CXCR4 3ODU CXCR4 3ODU
TM3 111 3.27x27 CXCR4 3ODU CXCR4 3ODU
TM3 112 3.28x28 CXCR4 3ODU CXCR4 3ODU
TM3 113 3.29x29 CXCR4 3ODU CXCR4 3ODU
TM3 114 3.30x30 CXCR4 3ODU CXCR4 3ODU
TM3 115 3.31x31 CXCR4 3ODU CXCR4 3ODU
TM3 116 3.32x32 CXCR4 3ODU CXCR4 3ODU
TM3 117 3.33x33 CXCR4 3ODU CXCR4 3ODU
TM3 118 3.34x34 CXCR4 3ODU CXCR4 3ODU
TM3 119 3.35x35 CXCR4 3ODU CXCR4 3ODU
TM3 120 3.36x36 CXCR4 3ODU CXCR4 3ODU
TM3 121 3.37x37 CXCR4 3ODU CXCR4 3ODU
TM3 122 3.38x38 CXCR4 3ODU CXCR4 3ODU
TM3 123 3.39x39 CXCR4 3ODU CXCR4 3ODU
TM3 124 3.40x40 CXCR4 3ODU CXCR4 3ODU
TM3 125 3.41x41 CXCR4 3ODU CCR9 5LWE
TM3 126 3.42x42 CXCR4 3ODU CXCR4 3ODU
TM3 127 3.43x43 CXCR4 3ODU CXCR4 3ODU
TM3 128 3.44x44 CXCR4 3ODU CXCR4 3ODU
TM3 129 3.45x45 CXCR4 3ODU CXCR4 3ODU
TM3 130 3.46x46 CXCR4 3ODU CXCR4 3ODU
TM3 131 3.47x47 CXCR4 3ODU CXCR4 3ODU
TM3 132 3.48x48 CXCR4 3ODU CXCR4 3ODU
TM3 133 3.49x49 CXCR4 3ODU CXCR4 3ODU
TM3 134 3.50x50 CXCR4 3ODU CXCR4 3ODU
TM3 135 3.51x51 CXCR4 3ODU CXCR4 3ODU
TM3 136 3.52x52 CXCR4 3ODU CXCR4 3ODU
TM3 137 3.53x53 CXCR4 3ODU CXCR4 3ODU
TM3 138 3.54x54 CXCR4 3ODU CXCR4 3ODU
TM3 139 3.55x55 CXCR4 3ODU CXCR4 3ODU
TM3 140 3.56x56 CXCR4 3ODU CXCR4 3ODU
ICL2 141 34.50x50 - - - -
ICL2 142 34.51x51 CCR5 5UIW - -
ICL2 143 34.52x52 CCR5 5UIW - -
ICL2 144 34.53x53 CCR5 5UIW BLT1 receptor 5X33
ICL2 145 34.54x54 CCR5 5UIW BLT1 receptor 5X33
ICL2 146 34.55x55 CCR5 5UIW C5a1 receptor 5O9H
ICL2 147 34.56x56 CCR5 5UIW - -
ICL2 148 34.57x57 - - - -
TM4 149 4.38x38 CXCR4 3ODU CXCR4 3ODU
TM4 150 4.39x39 CXCR4 3ODU CXCR4 3ODU
TM4 151 4.40x40 CXCR4 3ODU CXCR4 3ODU
TM4 152 4.41x41 CXCR4 3ODU CXCR4 3ODU
TM4 153 4.42x42 CXCR4 3ODU CXCR4 3ODU
TM4 154 4.43x43 CXCR4 3ODU CXCR4 3ODU
TM4 155 4.44x44 CXCR4 3ODU CXCR4 3ODU
TM4 156 4.45x45 CXCR4 3ODU CXCR4 3ODU
TM4 157 4.46x46 CXCR4 3ODU CXCR4 3ODU
TM4 158 4.47x47 CXCR4 3ODU CXCR4 3ODU
TM4 159 4.48x48 CXCR4 3ODU CXCR4 3ODU
TM4 160 4.49x49 CXCR4 3ODU CXCR4 3ODU
TM4 161 4.50x50 CXCR4 3ODU CXCR4 3ODU
TM4 162 4.51x51 CXCR4 3ODU CXCR4 3ODU
TM4 163 4.52x52 CXCR4 3ODU CXCR4 3ODU
TM4 164 4.53x53 CXCR4 3ODU CXCR4 3ODU
TM4 165 4.54x54 CXCR4 3ODU CXCR4 3ODU
TM4 166 4.55x55 CXCR4 3ODU CXCR4 3ODU
TM4 167 4.56x56 CXCR4 3ODU CXCR4 3ODU
TM4 168 4.57x57 CXCR4 3ODU CXCR4 3ODU
TM4 169 4.58x59 CXCR4 3ODU CXCR4 3ODU
TM4 170 4.59x60 CXCR4 3ODU CXCR4 3ODU
TM4 171 4.60x61 CXCR4 3ODU CXCR4 3ODU
TM4 172 4.61x62 CXCR4 3ODU CXCR4 3ODU
TM4 173 4.62x63 CXCR4 3ODU CXCR4 3ODU
TM4 174 4.63x64 CXCR4 3ODU CXCR4 3ODU
TM4 175 4.64x65 CXCR4 3ODU CXCR4 3ODU
ECL2 176 CXCR4 3ODU CXCR4 3ODU
ECL2 177 CXCR4 3ODU CXCR4 3ODU
ECL2 178 CXCR4 3ODU CXCR4 3ODU
ECL2 179 CXCR4 3ODU CXCR4 3ODU
ECL2 180 CXCR4 3ODU CXCR4 3ODU
ECL2 181 CXCR4 3ODU CXCR4 3ODU
ECL2 182 CXCR4 3ODU CXCR4 3ODU
ECL2 183 CXCR4 3ODU CXCR4 3ODU
ECL2 184 CXCR4 3ODU CXCR4 3ODU
ECL2 185 CXCR4 3ODU CXCR4 3ODU
ECL2 186 45.50x50 CXCR4 3ODU CXCR4 3ODU
ECL2 187 45.51x51 CXCR4 3ODU CXCR4 3ODU
ECL2 188 45.52x52 CXCR4 3ODU CXCR4 3ODU
ECL2 189 CXCR4 3ODU CXCR4 3ODU
ECL2 190 CXCR4 3ODU CXCR4 3ODU
ECL2 191 CXCR4 3ODU CXCR4 3ODU
ECL2 192 CXCR4 3ODU CXCR4 3ODU
TM5 193 5.32x33 CXCR4 3ODU CXCR4 3ODU
TM5 194 5.33x34 CXCR4 3ODU CXCR4 3ODU
TM5 195 5.34x35 CXCR4 3ODU CXCR4 3ODU
TM5 196 5.35x36 CXCR4 3ODU CXCR4 3ODU
TM5 197 5.36x37 CXCR4 3ODU CXCR4 3ODU
TM5 198 5.37x38 CXCR4 3ODU CXCR4 3ODU
TM5 199 5.38x39 CXCR4 3ODU CXCR4 3ODU
TM5 200 5.39x40 CXCR4 3ODU CXCR4 3ODU
TM5 201 5.40x41 CXCR4 3ODU CXCR4 3ODU
TM5 202 5.41x42 CXCR4 3ODU CXCR4 3ODU
TM5 203 5.42x43 CXCR4 3ODU CXCR4 3ODU
TM5 204 5.43x44 CXCR4 3ODU CXCR4 3ODU
TM5 205 5.44x45 CXCR4 3ODU CXCR4 3ODU
TM5 206 5.45x46 CXCR4 3ODU CXCR4 3ODU
TM5 207 5.46x461 CXCR4 3ODU CXCR4 3ODU
TM5 208 5.47x47 CXCR4 3ODU CXCR4 3ODU
TM5 209 5.48x48 CXCR4 3ODU CXCR4 3ODU
TM5 210 5.49x49 CXCR4 3ODU CXCR4 3ODU
TM5 211 5.50x50 CXCR4 3ODU CXCR4 3ODU
TM5 212 5.51x51 CXCR4 3ODU CXCR4 3ODU
TM5 213 5.52x52 CXCR4 3ODU CXCR4 3ODU
TM5 214 5.53x53 CXCR4 3ODU CXCR4 3ODU
TM5 215 5.54x54 CXCR4 3ODU CXCR4 3ODU
TM5 216 5.55x55 CXCR4 3ODU CXCR4 3ODU
TM5 217 5.56x56 CXCR4 3ODU CXCR4 3ODU
TM5 218 5.57x57 CXCR4 3ODU CXCR4 3ODU
TM5 219 5.58x58 CXCR4 3ODU CXCR4 3ODU
TM5 220 5.59x59 CXCR4 3ODU CXCR4 3ODU
TM5 221 5.60x60 CXCR4 3ODU CXCR4 3ODU
TM5 222 5.61x61 CXCR4 3ODU CXCR4 3ODU
TM5 223 5.62x62 CXCR4 3ODU CXCR4 3ODU
TM5 224 5.63x63 CXCR4 3ODU CXCR4 3ODU
TM5 225 5.64x64 CXCR4 3ODU CXCR4 3ODU
TM5 226 5.65x65 US28 4XT1 CXCR4 3OE0
TM5 227 5.66x66 US28 4XT1 CXCR4 3OE0
TM5 228 5.67x67 US28 4XT1 CXCR4 3OE0
TM5 229 5.68x68 US28 4XT1 US28 4XT1
ICL3 230 - - - -
ICL3 231 - - - -
ICL3 232 - - - -
ICL3 233 - - - -
TM6 234 6.30x30 CXCR4 3ODU CXCR4 3ODU
TM6 235 6.31x31 CXCR4 3ODU CXCR4 3ODU
TM6 236 6.32x32 CXCR4 3ODU CXCR4 3ODU
TM6 237 6.33x33 CXCR4 3ODU CXCR4 3ODU
TM6 238 6.34x34 CXCR4 3ODU CXCR4 3ODU
TM6 239 6.35x35 CXCR4 3ODU CXCR4 3ODU
TM6 240 6.36x36 CXCR4 3ODU CXCR4 3ODU
TM6 241 6.37x37 CXCR4 3ODU CXCR4 3ODU
TM6 242 6.38x38 CXCR4 3ODU CXCR4 3ODU
TM6 243 6.39x39 CXCR4 3ODU CXCR4 3ODU
TM6 244 6.40x40 CXCR4 3ODU CXCR4 3ODU
TM6 245 6.41x41 CXCR4 3ODU CXCR4 3ODU
TM6 246 6.42x42 CXCR4 3ODU CXCR4 3ODU
TM6 247 6.43x43 CXCR4 3ODU CXCR4 3ODU
TM6 248 6.44x44 CXCR4 3ODU CXCR4 3ODU
TM6 249 6.45x45 CXCR4 3ODU CXCR4 3ODU
TM6 250 6.46x46 CXCR4 3ODU CXCR4 3ODU
TM6 251 6.47x47 CXCR4 3ODU CXCR4 3ODU
TM6 252 6.48x48 CXCR4 3ODU CXCR4 3ODU
TM6 253 6.49x49 CXCR4 3ODU CXCR4 3ODU
TM6 254 6.50x50 CXCR4 3ODU CXCR4 3ODU
TM6 255 6.51x51 CXCR4 3ODU CXCR4 3ODU
TM6 256 6.52x52 CXCR4 3ODU CXCR4 3ODU
TM6 257 6.53x53 CXCR4 3ODU CXCR4 3ODU
TM6 258 6.54x54 CXCR4 3ODU CXCR4 3ODU
TM6 259 6.55x55 CXCR4 3ODU CXCR4 3ODU
TM6 260 6.56x56 CXCR4 3ODU CXCR4 3ODU
TM6 261 6.57x57 CXCR4 3ODU CXCR4 3ODU
TM6 262 6.58x58 CXCR4 3ODU CXCR4 3ODU
TM6 263 6.59x59 CXCR4 3ODU CXCR4 3ODU
TM6 264 6.60x60 CXCR4 3ODU CXCR4 3ODU
TM6 265 6.61x61 CXCR4 3ODU CXCR4 3ODU
TM6 266 6.62x62 CXCR4 3ODU CXCR4 3ODU
TM6 267 6.63x63 CXCR4 3ODU CXCR4 3ODU
TM6 268 6.64x64 CXCR4 3ODU CXCR4 3ODU
ECL3 269 CXCR4 3ODU CXCR4 3ODU
ECL3 270 CXCR4 3ODU CXCR4 3ODU
ECL3 271 CXCR4 3ODU CXCR4 3ODU
ECL3 272 CXCR4 3ODU CXCR4 3ODU
TM7 273 7.24x23 CXCR4 3ODU CXCR4 3ODU
TM7 274 7.25x24 CXCR4 3ODU CXCR4 3ODU
TM7 275 7.26x25 CXCR4 3ODU CXCR4 3ODU
TM7 276 7.27x26 CXCR4 3ODU CXCR4 3ODU
TM7 277 7.28x27 CXCR4 3ODU CXCR4 3ODU
TM7 278 7.29x28 CXCR4 3ODU CXCR4 3ODU
TM7 279 7.30x29 CXCR4 3ODU CXCR4 3ODU
TM7 280 7.31x30 CXCR4 3ODU CXCR4 3ODU
TM7 281 7.32x31 CXCR4 3ODU CXCR4 3ODU
TM7 282 7.33x32 CXCR4 3ODU CXCR4 3ODU
TM7 283 7.34x33 CXCR4 3ODU CXCR4 3ODU
TM7 284 7.35x34 CXCR4 3ODU CXCR4 3ODU
TM7 285 7.36x35 CXCR4 3ODU CXCR4 3ODU
TM7 286 7.37x36 CXCR4 3ODU CXCR4 3ODU
TM7 287 7.38x37 CXCR4 3ODU CXCR4 3ODU
TM7 288 7.39x38 CXCR4 3ODU CXCR4 3ODU
TM7 289 7.40x39 CXCR4 3ODU CXCR4 3ODU
TM7 290 7.41x40 CXCR4 3ODU CXCR4 3ODU
TM7 291 7.42x41 CXCR4 3ODU CXCR4 3ODU
TM7 292 7.43x42 CXCR4 3ODU CXCR4 3ODU
TM7 293 7.44x43 CXCR4 3ODU CXCR4 3ODU
TM7 294 7.45x45 CXCR4 3ODU CXCR4 3ODU
TM7 295 7.46x46 CXCR4 3ODU CXCR4 3ODU
TM7 296 7.47x47 CXCR4 3ODU CXCR4 3ODU
TM7 297 7.48x48 CXCR4 3ODU CXCR4 3ODU
TM7 298 7.49x49 CXCR4 3ODU CXCR4 3ODU
TM7 299 7.50x50 CXCR4 3ODU CXCR4 3ODU
TM7 300 7.51x51 CXCR4 3ODU CXCR4 3ODU
TM7 301 7.52x52 CCR5 5UIW CCR9 5LWE
TM7 302 7.53x53 CCR5 5UIW CCR5 5UIW
TM7 303 7.54x54 CCR5 5UIW CCR5 5UIW
TM7 304 7.55x55 CCR5 5UIW CCR5 5UIW
TM7 305 7.56x56 CCR5 5UIW δ receptor 4N6H
H8 306 8.47x47 CCR5 5UIW CCR5 5UIW
H8 307 8.48x48 CCR5 5UIW NTS1 receptor 4BUO
H8 308 8.49x49 CCR5 5UIW CCR5 5UIW
H8 309 8.50x50 CCR5 5UIW CCR5 5UIW
H8 310 8.51x51 CCR5 5UIW μ receptor 4DKL
H8 311 8.52x52 CCR5 5UIW M3 receptor 4U15
H8 312 8.53x53 CCR5 5UIW P2Y12 receptor 4NTJ
H8 313 8.54x54 CCR5 5UIW PAR2 5NDD
H8 314 8.55x55 CCR5 5UIW β2-adrenoceptor 5JQH
H8 315 8.56x56 CCR5 5UIW M2 receptor 3UON
H8 316 8.57x57 CCR5 5UIW OX2 receptor 5WS3
H8 317 8.58x58 CCR5 5UIW CCR9 5LWE
H8 318 8.59x59 CCR5 5UIW 5-HT2B receptor 5TUD
C-term 319 - - - -
C-term 320 - - - -
C-term 321 - - - -
C-term 322 - - - -
C-term 323 - - - -