5NDD_refined

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Intermediate (Δ distance (Å): 7.15 docs)

MAIN TEMPLATE

PAR2 (sequence similarity: 100%) PDB: 5NDD

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 88.3 5.5 6.1
Side-chains 85.4 6.1 8.4

Number of backbone templates: 6
Number of rotamer templates: 14

NGL is a WebGL based 3D viewer powered by MMTF.

5NDD
5NDZ
4XNW
5C1M
3VW7
5ZKP
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 59 PAR2 5NDD PAR2 5NDD
N-term 60 PAR2 5NDD PAR2 5NDD
N-term 61 PAR2 5NDD PAR2 5NDD
N-term 62 PAR2 5NDD PAR2 5NDD
N-term 63 PAR2 5NDD PAR2 5NDD
N-term 64 PAR2 5NDD PAR2 5NDD
N-term 65 PAR2 5NDD PAR2 5NDD
N-term 66 PAR2 5NDD PAR2 5NDD
N-term 67 PAR2 5NDD PAR2 5NDD
N-term 68 PAR2 5NDD PAR2 5NDD
N-term 69 PAR2 5NDD PAR2 5NDD
N-term 70 PAR2 5NDD PAR2 5NDD
TM1 71 1.28x28 PAR2 5NDD PAR2 5NDD
TM1 72 1.29x29 PAR2 5NDD PAR2 5NDD
TM1 73 1.30x30 PAR2 5NDD PAR2 5NDD
TM1 74 1.31x31 PAR2 5NDD PAR2 5NDD
TM1 75 1.32x32 PAR2 5NDD PAR2 5NDD
TM1 76 1.33x33 PAR2 5NDD PAR2 5NDD
TM1 77 1.34x34 PAR2 5NDD PAR2 5NDD
TM1 78 1.35x35 PAR2 5NDD PAR2 5NDD
TM1 79 1.36x36 PAR2 5NDD PAR2 5NDD
TM1 80 1.37x37 PAR2 5NDD PAR2 5NDD
TM1 81 1.38x38 PAR2 5NDD PAR2 5NDD
TM1 82 1.39x39 PAR2 5NDD PAR2 5NDD
TM1 83 1.40x40 PAR2 5NDD PAR2 5NDD
TM1 84 1.41x41 PAR2 5NDD PAR2 5NDD
TM1 85 1.42x42 PAR2 5NDD PAR2 5NDD
TM1 86 1.43x43 PAR2 5NDD PAR2 5NDD
TM1 87 1.44x44 PAR2 5NDD PAR2 5NDD
TM1 88 1.45x45 PAR2 5NDD PAR2 5NDD
TM1 89 1.46x46 PAR2 5NDD P2Y1 receptor 4XNW
TM1 90 1.47x47 PAR2 5NDD PAR2 5NDD
TM1 91 1.48x48 PAR2 5NDD PAR2 5NDD
TM1 92 1.49x49 PAR2 5NDD PAR2 5NDD
TM1 93 1.50x50 PAR2 5NDD PAR2 5NDD
TM1 94 1.51x51 PAR2 5NDD PAR2 5NDD
TM1 95 1.52x52 PAR2 5NDD PAR2 5NDD
TM1 96 1.53x53 PAR2 5NDD PAR2 5NDD
TM1 97 1.54x54 PAR2 5NDD PAR2 5NDD
TM1 98 1.55x55 PAR2 5NDD PAR2 5NDD
TM1 99 1.56x56 PAR2 5NDD PAR2 5NDD
TM1 100 1.57x57 PAR2 5NDD PAR2 5NDD
TM1 101 1.58x58 PAR2 5NDD PAR2 5NDD
TM1 102 1.59x59 PAR2 5NDD PAR2 5NDD
TM1 103 1.60x60 PAR2 5NDD PAR2 5NDD
ICL1 104 PAR2 5NDD PAR2 5NDD
ICL1 105 PAR2 5NDD PAR2 5NDD
ICL1 106 PAR2 5NDD PAR2 5NDD
ICL1 107 PAR2 5NDD PAR2 5NDD
TM2 108 2.37x37 PAR2 5NDD - -
TM2 109 2.38x38 PAR2 5NDD PAR2 5NDD
TM2 110 2.39x39 PAR2 5NDD PAR2 5NDD
TM2 111 2.40x40 PAR2 5NDD PAR2 5NDD
TM2 112 2.41x41 PAR2 5NDD PAR2 5NDD
TM2 113 2.42x42 PAR2 5NDD PAR2 5NDD
TM2 114 2.43x43 PAR2 5NDD PAR2 5NDD
TM2 115 2.44x44 PAR2 5NDD PAR2 5NDD
TM2 116 2.45x45 PAR2 5NDD PAR2 5NDD
TM2 117 2.46x46 PAR2 5NDD PAR2 5NDD
TM2 118 2.47x47 PAR2 5NDD PAR2 5NDD
TM2 119 2.48x48 PAR2 5NDD PAR2 5NDD
TM2 120 2.49x49 PAR2 5NDD PAR2 5NDD
TM2 121 2.50x50 PAR2 5NDD PAR2 5NDD
TM2 122 2.51x51 PAR2 5NDD PAR2 5NDD
TM2 123 2.52x52 PAR2 5NDD PAR2 5NDD
TM2 124 2.53x53 PAR2 5NDD PAR2 5NDD
TM2 125 2.54x54 PAR2 5NDD PAR2 5NDD
TM2 126 2.55x55 PAR2 5NDD PAR2 5NDD
TM2 127 2.56x56 PAR2 5NDD PAR2 5NDD
TM2 128 2.57x57 PAR2 5NDD PAR2 5NDD
TM2 129 2.58x58 PAR2 5NDD PAR2 5NDD
TM2 130 2.59x59 PAR2 5NDD PAR2 5NDD
TM2 131 2.60x60 PAR2 5NDD PAR2 5NDD
TM2 132 2.61x61 PAR2 5NDD PAR2 5NDD
TM2 133 2.62x62 PAR2 5NDD PAR2 5NDD
TM2 134 2.63x63 PAR2 5NDD PAR2 5NDD
TM2 135 2.64x64 PAR2 5NDD PAR2 5NDD
TM2 136 2.65x65 PAR2 5NDD PAR2 5NDD
TM2 137 2.66x66 PAR2 5NDD PAR2 5NDD
ECL1 138 - - - -
ECL1 139 PAR2 5NDZ PAR2 5NDZ
ECL1 140 23.49x49 PAR2 5NDZ PAR2 5NDZ
ECL1 141 23.50x50 PAR2 5NDZ PAR2 5NDZ
ECL1 142 23.51x51 PAR2 5NDZ PAR2 5NDZ
ECL1 143 23.52x52 - - - -
TM3 144 3.21x21 PAR2 5NDD PAR2 5NDD
TM3 145 3.22x22 PAR2 5NDD PAR2 5NDD
TM3 146 3.23x23 PAR2 5NDD PAR2 5NDD
TM3 147 3.24x24 PAR2 5NDD PAR2 5NDD
TM3 148 3.25x25 PAR2 5NDD PAR2 5NDD
TM3 149 3.26x26 PAR2 5NDD PAR2 5NDD
TM3 150 3.27x27 PAR2 5NDD PAR2 5NDD
TM3 151 3.28x28 PAR2 5NDD PAR2 5NDD
TM3 152 3.29x29 PAR2 5NDD PAR2 5NDD
TM3 153 3.30x30 PAR2 5NDD PAR2 5NDD
TM3 154 3.31x31 PAR2 5NDD PAR2 5NDD
TM3 155 3.32x32 PAR2 5NDD PAR2 5NDD
TM3 156 3.33x33 PAR2 5NDD PAR2 5NDD
TM3 157 3.34x34 PAR2 5NDD - -
TM3 158 3.35x35 PAR2 5NDD PAR2 5NDD
TM3 159 3.36x36 PAR2 5NDD PAR2 5NDD
TM3 160 3.37x37 PAR2 5NDD PAR2 5NDD
TM3 161 3.38x38 PAR2 5NDD PAR2 5NDD
TM3 162 3.39x39 PAR2 5NDD PAR2 5NDD
TM3 163 3.40x40 PAR2 5NDD PAR2 5NDD
TM3 164 3.41x41 PAR2 5NDD PAR2 5NDD
TM3 165 3.42x42 PAR2 5NDD PAR2 5NDD
TM3 166 3.43x43 PAR2 5NDD PAR1 3VW7
TM3 167 3.44x44 PAR2 5NDD PAR2 5NDD
TM3 168 3.45x45 PAR2 5NDD PAR2 5NDD
TM3 169 3.46x46 PAR2 5NDD PAR2 5NDD
TM3 170 3.47x47 PAR2 5NDD PAR2 5NDD
TM3 171 3.48x48 PAR2 5NDD PAR2 5NDD
TM3 172 3.49x49 PAR2 5NDD PAR2 5NDD
TM3 173 3.50x50 PAR2 5NDD PAR2 5NDD
TM3 174 3.51x51 PAR2 5NDD P2Y1 receptor 4XNW
TM3 175 3.52x52 PAR2 5NDD PAR2 5NDD
TM3 176 3.53x53 PAR2 5NDD Rhodopsin 5DYS
TM3 177 3.54x54 PAR2 5NDD PAR2 5NDD
TM3 178 3.55x55 PAR2 5NDD PAR2 5NDD
TM3 179 3.56x56 PAR2 5NDD PAR2 5NDD
ICL2 180 34.50x50 - - - -
ICL2 181 34.51x51 P2Y1 receptor 4XNW Rhodopsin 4ZWJ
ICL2 182 34.52x52 P2Y1 receptor 4XNW FFA1 receptor 5TZY
ICL2 183 34.53x53 P2Y1 receptor 4XNW - -
ICL2 184 34.54x54 P2Y1 receptor 4XNW 5-HT1B receptor 4IAQ
ICL2 185 34.55x55 P2Y1 receptor 4XNW C5a1 receptor 5O9H
ICL2 186 34.56x56 - - - -
TM4 187 4.38x38 PAR2 5NDD PAR2 5NDD
TM4 188 4.39x39 PAR2 5NDD PAR2 5NDD
TM4 189 4.40x40 PAR2 5NDD PAR2 5NDD
TM4 190 4.41x41 PAR2 5NDD PAR2 5NDD
TM4 191 4.42x42 PAR2 5NDD PAR2 5NDD
TM4 192 4.43x43 PAR2 5NDD PAR2 5NDD
TM4 193 4.44x44 PAR2 5NDD PAR2 5NDD
TM4 194 4.45x45 PAR2 5NDD PAR2 5NDD
TM4 195 4.46x46 PAR2 5NDD PAR2 5NDD
TM4 196 4.47x47 PAR2 5NDD PAR2 5NDD
TM4 197 4.48x48 PAR2 5NDD PAR2 5NDD
TM4 198 4.49x49 PAR2 5NDD PAR2 5NDD
TM4 199 4.50x50 PAR2 5NDD PAR2 5NDD
TM4 200 4.51x51 PAR2 5NDD PAR2 5NDD
TM4 201 4.52x52 PAR2 5NDD PAR2 5NDD
TM4 202 4.53x53 PAR2 5NDD PAR2 5NDD
TM4 203 4.54x54 PAR2 5NDD PAR2 5NDD
TM4 204 4.55x55 PAR2 5NDD PAR2 5NDD
TM4 205 4.56x56 PAR2 5NDD PAR2 5NDD
TM4 206 4.57x57 PAR2 5NDD PAR2 5NDD
TM4 207 4.58x59 PAR2 5NDD PAR2 5NDD
TM4 208 4.59x60 PAR2 5NDD PAR2 5NDD
TM4 209 4.60x61 PAR2 5NDD PAR2 5NDD
TM4 210 4.61x62 PAR2 5NDD PAR2 5NDD
TM4 211 4.62x63 PAR2 5NDD PAR2 5NDD
ECL2 212 PAR2 5NDD PAR2 5NDD
ECL2 213 PAR2 5NDD PAR2 5NDD
ECL2 214 PAR2 5NDD PAR2 5NDD
ECL2 215 PAR2 5NDD PAR2 5NDD
ECL2 216 PAR2 5NDD PAR2 5NDD
ECL2 217 PAR2 5NDD PAR2 5NDD
ECL2 218 PAR2 5NDD PAR2 5NDD
ECL2 219 PAR2 5NDD PAR2 5NDD
ECL2 220 PAR2 5NDD PAR2 5NDD
ECL2 221 PAR2 5NDD PAR2 5NDD
ECL2 222 PAR2 5NDD - -
ECL2 223 PAR2 5NDD PAR2 5NDD
ECL2 224 PAR2 5NDD PAR2 5NDD
ECL2 225 PAR2 5NDD PAR2 5NDD
ECL2 226 45.50x50 PAR2 5NDD PAR2 5NDD
ECL2 227 45.51x51 PAR2 5NDD PAR2 5NDD
ECL2 228 45.52x52 PAR2 5NDD PAR2 5NDD
ECL2 229 PAR2 5NDD PAR2 5NDD
ECL2 230 PAR2 5NDD PAR2 5NDD
ECL2 231 PAR2 5NDD PAR2 5NDD
ECL2 232 PAR2 5NDD PAR2 5NDD
ECL2 233 PAR2 5NDD PAR2 5NDD
ECL2 234 PAR2 5NDD PAR2 5NDD
TM5 235 5.31x32 PAR2 5NDD PAR2 5NDD
TM5 236 5.32x33 PAR2 5NDD PAR2 5NDD
TM5 237 5.33x34 PAR2 5NDD PAR2 5NDD
TM5 238 5.34x35 PAR2 5NDD PAR2 5NDD
TM5 239 5.35x36 PAR2 5NDD PAR2 5NDD
TM5 240 5.36x37 PAR2 5NDD PAR2 5NDD
TM5 241 5.37x38 PAR2 5NDD PAR2 5NDD
TM5 242 5.38x39 PAR2 5NDD PAR2 5NDD
TM5 243 5.39x40 PAR2 5NDD PAR2 5NDD
TM5 244 5.40x41 PAR2 5NDD PAR2 5NDD
TM5 245 5.41x42 PAR2 5NDD PAR2 5NDD
TM5 246 5.42x43 PAR2 5NDD PAR2 5NDD
TM5 247 5.43x44 PAR2 5NDD PAR2 5NDD
TM5 248 5.44x45 PAR2 5NDD PAR2 5NDD
TM5 249 5.45x46 PAR2 5NDD PAR2 5NDD
TM5 250 5.46x461 PAR2 5NDD PAR2 5NDD
TM5 251 5.47x47 PAR2 5NDD PAR2 5NDD
TM5 252 5.48x48 PAR2 5NDD PAR2 5NDD
TM5 253 5.49x49 PAR2 5NDD PAR2 5NDD
TM5 254 5.50x50 PAR2 5NDD PAR2 5NDD
TM5 255 5.51x51 PAR2 5NDD PAR2 5NDD
TM5 256 5.52x52 PAR2 5NDD PAR2 5NDD
TM5 257 5.53x53 PAR2 5NDD PAR2 5NDD
TM5 258 5.54x54 PAR2 5NDD PAR2 5NDD
TM5 259 5.55x55 PAR2 5NDD PAR2 5NDD
TM5 260 5.56x56 PAR2 5NDD PAR2 5NDD
TM5 261 5.57x57 PAR2 5NDD PAR2 5NDD
TM5 262 5.58x58 PAR2 5NDD PAR2 5NDD
TM5 263 5.59x59 PAR2 5NDD PAR2 5NDD
TM5 264 5.60x60 PAR2 5NDD PAR2 5NDD
TM5 265 5.61x61 PAR2 5NDD PAR2 5NDD
TM5 266 5.62x62 PAR2 5NDD PAR2 5NDD
TM5 267 5.63x63 PAR2 5NDD PAR2 5NDD
TM5 268 5.64x64 PAR2 5NDD PAR2 5NDD
TM5 269 5.65x65 PAR2 5NDD PAR2 5NDD
TM5 270 5.66x66 - - - -
TM5 271 5.67x67 - - - -
TM5 272 5.68x68 - - - -
ICL3 273 - - - -
ICL3 274 - - - -
ICL3 275 - - - -
TM6 276 6.24x25 μ receptor 5C1M μ receptor 6DDE
TM6 277 6.25x26 μ receptor 5C1M AT2 receptor 5UNG
TM6 278 6.26x27 PAR2 5NDD PAR2 5NDD
TM6 279 6.27x28 PAR2 5NDD PAR2 5NDD
TM6 280 6.28x29 PAR2 5NDD PAR2 5NDD
TM6 281 6.29x30 PAR2 5NDD PAR2 5NDD
TM6 282 6.30x31 PAR2 5NDD PAR2 5NDD
TM6 283 6.31x32 PAR2 5NDD PAR2 5NDD
TM6 284 6.32x33 PAR2 5NDD PAR2 5NDD
TM6 285 6.33x34 PAR2 5NDD PAR2 5NDD
TM6 286 6.34x35 PAR2 5NDD PAR2 5NDD
TM6 287 6.35x36 PAR2 5NDD PAR2 5NDD
TM6 288 6.36x37 PAR2 5NDD PAR2 5NDD
TM6 289 6.37x38 PAR2 5NDD LPA6 receptor 5XSZ
TM6 290 6.38x39 PAR2 5NDD PAR2 5NDD
TM6 291 6.39x40 PAR2 5NDD PAR2 5NDD
TM6 292 6.40x41 PAR2 5NDD PAR2 5NDD
TM6 293 6.41x42 PAR2 5NDD P2Y1 receptor 4XNW
TM6 294 6.42x43 PAR2 5NDD PAR2 5NDD
TM6 295 6.43x44 PAR2 5NDD PAR2 5NDD
TM6 296 6.44x45 PAR2 5NDD PAR2 5NDD
TM6 297 6.45x46 PAR2 5NDD PAR2 5NDD
TM6 298 6.46x461 PAR2 5NDD PAR2 5NDD
TM6 299 6.47x47 PAR2 5NDD PAR2 5NDD
TM6 300 6.48x48 PAR2 5NDD PAR2 5NDD
TM6 301 6.49x49 PAR2 5NDD PAR2 5NDD
TM6 302 6.50x50 PAR2 5NDD PAR2 5NDD
TM6 303 6.51x51 PAR2 5NDD PAR2 5NDD
TM6 304 6.52x52 PAR2 5NDD PAR2 5NDD
TM6 305 6.53x53 PAR2 5NDD PAR2 5NDD
TM6 306 6.54x54 PAR2 5NDD PAR2 5NDD
TM6 307 6.55x55 PAR2 5NDD PAR2 5NDD
TM6 308 6.56x56 PAR2 5NDD PAR2 5NDD
TM6 309 6.57x57 PAR2 5NDD PAR2 5NDD
TM6 310 6.58x58 PAR2 5NDD PAR2 5NDD
TM6 311 6.59x59 PAR2 5NDD PAR2 5NDD
TM6 312 6.60x60 PAR2 5NDD PAR2 5NDD
TM6 313 6.61x61 PAR2 5NDD PAR2 5NDD
TM6 314 6.62x62 PAR2 5NDD PAR2 5NDD
ECL3 315 - - - -
ECL3 316 - - - -
ECL3 317 - - - -
ECL3 318 - - - -
TM7 319 7.28x27 PAR1 3VW7 - -
TM7 320 7.29x28 PAR1 3VW7 LPA6 receptor 5XSZ
TM7 321 7.30x29 PAR1 3VW7 - -
TM7 322 7.31x30 PAR2 5NDD PAR2 5NDD
TM7 323 7.32x31 PAR2 5NDD PAR2 5NDD
TM7 324 7.33x32 PAR2 5NDD PAR2 5NDD
TM7 325 7.34x33 PAR2 5NDD PAR2 5NDD
TM7 326 7.35x34 PAR2 5NDD PAR2 5NDD
TM7 327 7.36x35 PAR2 5NDD PAR2 5NDD
TM7 328 7.37x36 PAR2 5NDD PAR2 5NDD
TM7 329 7.38x37 PAR2 5NDD PAR2 5NDD
TM7 330 7.39x38 PAR2 5NDD PAR2 5NDD
TM7 331 7.40x39 PAR2 5NDD PAR2 5NDD
TM7 332 7.41x40 PAR2 5NDD PAR2 5NDD
TM7 333 7.42x41 PAR2 5NDD PAR2 5NDD
TM7 334 7.43x42 PAR2 5NDD PAR2 5NDD
TM7 335 7.44x43 PAR2 5NDD PAR2 5NDD
TM7 336 7.45x45 PAR2 5NDD PAR2 5NDD
TM7 337 7.46x46 PAR2 5NDD PAR2 5NDD
TM7 338 7.47x47 PAR2 5NDD PAR2 5NDD
TM7 339 7.48x48 PAR2 5NDD PAR2 5NDD
TM7 340 7.49x49 PAR2 5NDD PAR2 5NDD
TM7 341 7.50x50 PAR2 5NDD PAR2 5NDD
TM7 342 7.51x51 PAR2 5NDD PAR2 5NDD
TM7 343 7.52x52 PAR2 5NDD PAR2 5NDD
TM7 344 7.53x53 PAR2 5NDD PAR2 5NDD
TM7 345 7.54x54 PAR2 5NDD PAR2 5NDD
TM7 346 7.55x55 PAR2 5NDD PAR2 5NDD
TM7 347 7.56x56 PAR2 5NDD PAR2 5NDD
H8 348 8.47x47 PAR2 5NDD PAR2 5NDD
H8 349 8.48x48 PAR2 5NDD PAR2 5NDD
H8 350 8.49x49 PAR2 5NDD PAR2 5NDD
H8 351 8.50x50 PAR2 5NDD PAR2 5NDD
H8 352 8.51x51 PAR2 5NDD PAR2 5NDD
H8 353 8.52x52 PAR2 5NDD PAR2 5NDD
H8 354 8.53x53 PAR2 5NDD PAR2 5NDD
H8 355 8.54x54 PAR2 5NDD PAR2 5NDD
H8 356 8.55x55 PAR2 5NDD PAR2 5NDD
H8 357 8.56x56 PAR2 5NDD PAR2 5NDD
H8 358 8.57x57 PAR2 5NDD PAR2 5NDD
H8 359 8.58x58 PAR2 5NDD PAR2 5NDD
H8 360 8.59x59 PAF receptor 5ZKP apelin receptor 5VBL
H8 361 8.60x60 PAF receptor 5ZKP OX2 receptor 5WS3
H8 362 8.61x61 PAF receptor 5ZKP - -
C-term 363 - - - -
C-term 364 - - - -
C-term 365 - - - -
C-term 366 - - - -
C-term 367 - - - -