5WIV_refined

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Inactive (Δ distance (Å): -0.93 docs)

MAIN TEMPLATE

D4 receptor (sequence similarity: 100%) PDB: 5WIV

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 81.6 10.0 8.4
Side-chains 78.6 9.7 11.7

Number of backbone templates: 5
Number of rotamer templates: 17

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4AMJ
5WIV
3PBL
3SN6
5TVN
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 26 - - - -
N-term 27 - - - -
N-term 28 - - - -
N-term 29 - - - -
N-term 30 - - - -
TM1 31 1.29x29 β1-adrenoceptor 4AMJ - -
TM1 32 1.30x30 D4 receptor 5WIV D4 receptor 5WIV
TM1 33 1.31x31 D4 receptor 5WIV M1 receptor 5CXV
TM1 34 1.32x32 D4 receptor 5WIV D4 receptor 5WIV
TM1 35 1.33x33 D4 receptor 5WIV D4 receptor 5WIV
TM1 36 1.34x34 D4 receptor 5WIV D4 receptor 5WIV
TM1 37 1.35x35 D4 receptor 5WIV D4 receptor 5WIV
TM1 38 1.36x36 D4 receptor 5WIV D4 receptor 5WIV
TM1 39 1.37x37 D4 receptor 5WIV D4 receptor 5WIV
TM1 40 1.38x38 D4 receptor 5WIV D4 receptor 5WIV
TM1 41 1.39x39 D4 receptor 5WIV D4 receptor 5WIV
TM1 42 1.40x40 D4 receptor 5WIV D4 receptor 5WIV
TM1 43 1.41x41 D4 receptor 5WIV D4 receptor 5WIV
TM1 44 1.42x42 D4 receptor 5WIV D4 receptor 5WIV
TM1 45 1.43x43 D4 receptor 5WIV D4 receptor 5WIV
TM1 46 1.44x44 D4 receptor 5WIV D4 receptor 5WIV
TM1 47 1.45x45 D4 receptor 5WIV D4 receptor 5WIV
TM1 48 1.46x46 D4 receptor 5WIV D4 receptor 5WIV
TM1 49 1.47x47 D4 receptor 5WIV D4 receptor 5WIV
TM1 50 1.48x48 D4 receptor 5WIV D4 receptor 5WIV
TM1 51 1.49x49 D4 receptor 5WIV D4 receptor 5WIV
TM1 52 1.50x50 D4 receptor 5WIV D4 receptor 5WIV
TM1 53 1.51x51 D4 receptor 5WIV D4 receptor 5WIV
TM1 54 1.52x52 D4 receptor 5WIV D4 receptor 5WIV
TM1 55 1.53x53 D4 receptor 5WIV D4 receptor 5WIV
TM1 56 1.54x54 D4 receptor 5WIV D4 receptor 5WIV
TM1 57 1.55x55 D4 receptor 5WIV D4 receptor 5WIV
TM1 58 1.56x56 D4 receptor 5WIV D4 receptor 5WIV
TM1 59 1.57x57 D4 receptor 5WIV D4 receptor 5WIV
TM1 60 1.58x58 D4 receptor 5WIV D4 receptor 5WIV
TM1 61 1.59x59 D4 receptor 5WIV D4 receptor 5WIV
TM1 62 1.60x60 D4 receptor 5WIV D3 receptor 3PBL
ICL1 63 12.48x48 D4 receptor 5WIV D3 receptor 3PBL
ICL1 64 12.49x49 D4 receptor 5WIV D4 receptor 5WIV
ICL1 65 12.50x50 D4 receptor 5WIV D4 receptor 5WIV
ICL1 66 12.51x51 D4 receptor 5WIV D4 receptor 5WIV
TM2 67 2.37x37 D4 receptor 5WIV D4 receptor 5WIV
TM2 68 2.38x38 D4 receptor 5WIV D4 receptor 5WIV
TM2 69 2.39x39 D4 receptor 5WIV D4 receptor 5WIV
TM2 70 2.40x40 D4 receptor 5WIV D4 receptor 5WIV
TM2 71 2.41x41 D4 receptor 5WIV D4 receptor 5WIV
TM2 72 2.42x42 D4 receptor 5WIV D4 receptor 5WIV
TM2 73 2.43x43 D4 receptor 5WIV D4 receptor 5WIV
TM2 74 2.44x44 D4 receptor 5WIV D4 receptor 5WIV
TM2 75 2.45x45 D4 receptor 5WIV D4 receptor 5WIV
TM2 76 2.46x46 D4 receptor 5WIV D4 receptor 5WIV
TM2 77 2.47x47 D4 receptor 5WIV D4 receptor 5WIV
TM2 78 2.48x48 D4 receptor 5WIV D4 receptor 5WIV
TM2 79 2.49x49 D4 receptor 5WIV D4 receptor 5WIV
TM2 80 2.50x50 D4 receptor 5WIV D4 receptor 5WIV
TM2 81 2.51x51 D4 receptor 5WIV D4 receptor 5WIV
TM2 82 2.52x52 D4 receptor 5WIV D4 receptor 5WIV
TM2 83 2.53x53 D4 receptor 5WIV D4 receptor 5WIV
TM2 84 2.54x54 D4 receptor 5WIV D4 receptor 5WIV
TM2 85 2.55x55 D4 receptor 5WIV D4 receptor 5WIV
TM2 86 2.56x551 D4 receptor 5WIV D4 receptor 5WIV
TM2 87 2.57x56 D4 receptor 5WIV D4 receptor 5WIV
TM2 88 2.58x57 D4 receptor 5WIV D4 receptor 5WIV
TM2 89 2.59x58 D4 receptor 5WIV D4 receptor 5WIV
TM2 90 2.60x59 D4 receptor 5WIV D4 receptor 5WIV
TM2 91 2.61x60 D4 receptor 5WIV D4 receptor 5WIV
TM2 92 2.62x61 D4 receptor 5WIV D4 receptor 5WIV
TM2 93 2.63x62 D4 receptor 5WIV D4 receptor 5WIV
TM2 94 2.64x63 D4 receptor 5WIV D4 receptor 5WIV
TM2 95 2.65x64 D4 receptor 5WIV D4 receptor 5WIV
TM2 96 2.66x65 D4 receptor 5WIV D4 receptor 5WIV
TM2 97 2.67x66 D4 receptor 5WIV D4 receptor 5WIV
ECL1 98 D4 receptor 5WIV D4 receptor 5WIV
ECL1 99 D4 receptor 5WIV D4 receptor 5WIV
ECL1 100 23.49x49 D4 receptor 5WIV D4 receptor 5WIV
ECL1 101 23.50x50 D4 receptor 5WIV D4 receptor 5WIV
ECL1 102 23.51x51 D4 receptor 5WIV β1-adrenoceptor 4AMJ
ECL1 103 23.52x52 D4 receptor 5WIV D4 receptor 5WIV
TM3 104 3.21x21 D4 receptor 5WIV D4 receptor 5WIV
TM3 105 3.22x22 D4 receptor 5WIV D4 receptor 5WIV
TM3 106 3.23x23 D4 receptor 5WIV D4 receptor 5WIV
TM3 107 3.24x24 D4 receptor 5WIV D4 receptor 5WIV
TM3 108 3.25x25 D4 receptor 5WIV D4 receptor 5WIV
TM3 109 3.26x26 D4 receptor 5WIV D4 receptor 5WIV
TM3 110 3.27x27 D4 receptor 5WIV D4 receptor 5WIV
TM3 111 3.28x28 D4 receptor 5WIV D4 receptor 5WIV
TM3 112 3.29x29 D4 receptor 5WIV D4 receptor 5WIV
TM3 113 3.30x30 D4 receptor 5WIV D4 receptor 5WIV
TM3 114 3.31x31 D4 receptor 5WIV D4 receptor 5WIV
TM3 115 3.32x32 D4 receptor 5WIV D4 receptor 5WIV
TM3 116 3.33x33 D4 receptor 5WIV D4 receptor 5WIV
TM3 117 3.34x34 D4 receptor 5WIV D4 receptor 5WIV
TM3 118 3.35x35 D4 receptor 5WIV D4 receptor 5WIV
TM3 119 3.36x36 D4 receptor 5WIV D4 receptor 5WIV
TM3 120 3.37x37 D4 receptor 5WIV D4 receptor 5WIV
TM3 121 3.38x38 D4 receptor 5WIV D4 receptor 5WIV
TM3 122 3.39x39 D4 receptor 5WIV D4 receptor 5WIV
TM3 123 3.40x40 D4 receptor 5WIV D4 receptor 5WIV
TM3 124 3.41x41 D4 receptor 5WIV D4 receptor 5WIV
TM3 125 3.42x42 D4 receptor 5WIV D4 receptor 5WIV
TM3 126 3.43x43 D4 receptor 5WIV D4 receptor 5WIV
TM3 127 3.44x44 D4 receptor 5WIV D4 receptor 5WIV
TM3 128 3.45x45 D4 receptor 5WIV D4 receptor 5WIV
TM3 129 3.46x46 D4 receptor 5WIV D4 receptor 5WIV
TM3 130 3.47x47 D4 receptor 5WIV D4 receptor 5WIV
TM3 131 3.48x48 D4 receptor 5WIV D4 receptor 5WIV
TM3 132 3.49x49 D4 receptor 5WIV D4 receptor 5WIV
TM3 133 3.50x50 D4 receptor 5WIV D4 receptor 5WIV
TM3 134 3.51x51 D4 receptor 5WIV D4 receptor 5WIV
TM3 135 3.52x52 D4 receptor 5WIV D4 receptor 5WIV
TM3 136 3.53x53 D4 receptor 5WIV D4 receptor 5WIV
TM3 137 3.54x54 D4 receptor 5WIV D4 receptor 5WIV
TM3 138 3.55x55 D4 receptor 5WIV D4 receptor 5WIV
TM3 139 3.56x56 D4 receptor 5WIV D4 receptor 5WIV
ICL2 140 34.50x50 - - - -
ICL2 141 34.51x51 D3 receptor 3PBL M1 receptor 5CXV
ICL2 142 34.52x52 D3 receptor 3PBL β1-adrenoceptor 4AMJ
ICL2 143 34.53x53 D3 receptor 3PBL D3 receptor 3PBL
ICL2 144 34.54x54 D3 receptor 3PBL A2A receptor 3VG9
ICL2 145 34.55x55 D3 receptor 3PBL CB1 receptor 5TGZ
ICL2 146 34.56x56 D3 receptor 3PBL - -
ICL2 147 34.57x57 - - - -
TM4 148 4.38x38 D3 receptor 3PBL - -
TM4 149 4.39x39 D3 receptor 3PBL NOP receptor 5DHG
TM4 150 4.40x40 D4 receptor 5WIV D4 receptor 5WIV
TM4 151 4.41x41 D4 receptor 5WIV D4 receptor 5WIV
TM4 152 4.42x42 D4 receptor 5WIV D4 receptor 5WIV
TM4 153 4.43x43 D4 receptor 5WIV D4 receptor 5WIV
TM4 154 4.44x44 D4 receptor 5WIV D4 receptor 5WIV
TM4 155 4.45x45 D4 receptor 5WIV D4 receptor 5WIV
TM4 156 4.46x46 D4 receptor 5WIV D4 receptor 5WIV
TM4 157 4.47x47 D4 receptor 5WIV D4 receptor 5WIV
TM4 158 4.48x48 D4 receptor 5WIV D4 receptor 5WIV
TM4 159 4.49x49 D4 receptor 5WIV D4 receptor 5WIV
TM4 160 4.50x50 D4 receptor 5WIV D4 receptor 5WIV
TM4 161 4.51x51 D4 receptor 5WIV D4 receptor 5WIV
TM4 162 4.52x52 D4 receptor 5WIV D4 receptor 5WIV
TM4 163 4.53x53 D4 receptor 5WIV D4 receptor 5WIV
TM4 164 4.54x54 D4 receptor 5WIV D4 receptor 5WIV
TM4 165 4.55x55 D4 receptor 5WIV D4 receptor 5WIV
TM4 166 4.56x56 D4 receptor 5WIV D4 receptor 5WIV
TM4 167 4.57x57 D4 receptor 5WIV D4 receptor 5WIV
TM4 168 4.58x59 D4 receptor 5WIV D4 receptor 5WIV
TM4 169 4.59x60 D4 receptor 5WIV D4 receptor 5WIV
TM4 170 4.60x61 D4 receptor 5WIV D4 receptor 5WIV
TM4 171 4.61x62 D4 receptor 5WIV D4 receptor 5WIV
TM4 172 4.62x63 D4 receptor 5WIV D4 receptor 5WIV
TM4 173 4.63x64 D4 receptor 5WIV D4 receptor 5WIV
ECL2 174 D4 receptor 5WIV D4 receptor 5WIV
ECL2 175 D4 receptor 5WIV D4 receptor 5WIV
ECL2 176 D4 receptor 5WIV - -
ECL2 177 - - - -
ECL2 178 - - - -
ECL2 179 - - - -
ECL2 180 - - - -
ECL2 181 - - - -
ECL2 182 D4 receptor 5WIV D4 receptor 5WIV
ECL2 183 D4 receptor 5WIV D4 receptor 5WIV
ECL2 184 D4 receptor 5WIV D4 receptor 5WIV
ECL2 185 45.50x50 D4 receptor 5WIV D4 receptor 5WIV
ECL2 186 45.51x51 D4 receptor 5WIV D4 receptor 5WIV
ECL2 187 45.52x52 D4 receptor 5WIV D4 receptor 5WIV
ECL2 188 D4 receptor 5WIV D4 receptor 5WIV
TM5 189 5.35x36 D4 receptor 5WIV D4 receptor 5WIV
TM5 190 5.36x37 D4 receptor 5WIV D4 receptor 5WIV
TM5 191 5.37x38 D4 receptor 5WIV D4 receptor 5WIV
TM5 192 5.38x39 D4 receptor 5WIV D4 receptor 5WIV
TM5 193 5.39x40 D4 receptor 5WIV D4 receptor 5WIV
TM5 194 5.40x41 D4 receptor 5WIV D4 receptor 5WIV
TM5 195 5.41x42 D4 receptor 5WIV D4 receptor 5WIV
TM5 196 5.42x43 D4 receptor 5WIV D4 receptor 5WIV
TM5 197 5.43x44 D4 receptor 5WIV D4 receptor 5WIV
TM5 198 5.44x45 D4 receptor 5WIV D4 receptor 5WIV
TM5 199 5.45x46 D4 receptor 5WIV D4 receptor 5WIV
TM5 200 5.46x461 D4 receptor 5WIV D4 receptor 5WIV
TM5 201 5.47x47 D4 receptor 5WIV D4 receptor 5WIV
TM5 202 5.48x48 D4 receptor 5WIV D4 receptor 5WIV
TM5 203 5.49x49 D4 receptor 5WIV D4 receptor 5WIV
TM5 204 5.50x50 D4 receptor 5WIV D4 receptor 5WIV
TM5 205 5.51x51 D4 receptor 5WIV D4 receptor 5WIV
TM5 206 5.52x52 D4 receptor 5WIV D4 receptor 5WIV
TM5 207 5.53x53 D4 receptor 5WIV D4 receptor 5WIV
TM5 208 5.54x54 D4 receptor 5WIV D4 receptor 5WIV
TM5 209 5.55x55 D4 receptor 5WIV D4 receptor 5WIV
TM5 210 5.56x56 D4 receptor 5WIV D4 receptor 5WIV
TM5 211 5.57x57 D4 receptor 5WIV D4 receptor 5WIV
TM5 212 5.58x58 D4 receptor 5WIV D4 receptor 5WIV
TM5 213 5.59x59 D4 receptor 5WIV D4 receptor 5WIV
TM5 214 5.60x60 D4 receptor 5WIV D4 receptor 5WIV
TM5 215 5.61x61 D4 receptor 5WIV D4 receptor 5WIV
TM5 216 5.62x62 D4 receptor 5WIV D4 receptor 5WIV
TM5 217 5.63x63 D4 receptor 5WIV D4 receptor 5WIV
TM5 218 5.64x64 D4 receptor 5WIV D4 receptor 5WIV
TM5 219 5.65x65 D4 receptor 5WIV D4 receptor 5WIV
TM5 220 5.66x66 D4 receptor 5WIV D4 receptor 5WIV
TM5 221 5.67x67 D4 receptor 5WIV D4 receptor 5WIV
TM5 222 5.68x68 D4 receptor 5WIV D4 receptor 5WIV
TM5 223 5.69x69 β2-adrenoceptor 3SN6 Rhodopsin 2Z73
TM5 224 5.70x70 β2-adrenoceptor 3SN6 P2Y12 receptor 4NTJ
TM5 225 5.71x71 β2-adrenoceptor 3SN6 - -
TM5 226 5.72x72 β2-adrenoceptor 3SN6 - -
TM5 227 5.73x73 β2-adrenoceptor 3SN6 - -
TM5 228 5.74x74 β2-adrenoceptor 3SN6 Rhodopsin 2Z73
TM5 229 5.75x75 β2-adrenoceptor 3SN6 - -
ICL3 230 - - - -
ICL3 231 - - - -
ICL3 232 - - - -
ICL3 233 - - - -
ICL3 234 - - - -
ICL3 378 - - - -
ICL3 379 - - - -
ICL3 380 - - - -
ICL3 381 - - - -
ICL3 382 - - - -
TM6 383 6.24x24 5-HT2B receptor 5TVN Rhodopsin 1GZM
TM6 384 6.25x25 5-HT2B receptor 5TVN OX2 receptor 5WS3
TM6 385 6.26x26 5-HT2B receptor 5TVN - -
TM6 386 6.27x27 5-HT2B receptor 5TVN FFA1 receptor 5TZY
TM6 387 6.28x28 5-HT2B receptor 5TVN A1 receptor 5N2S
TM6 388 6.29x29 5-HT2B receptor 5TVN D3 receptor 3PBL
TM6 389 6.30x30 5-HT2B receptor 5TVN 5-HT2B receptor 5TVN
TM6 390 6.31x31 5-HT2B receptor 5TVN H1 receptor 3RZE
TM6 391 6.32x32 5-HT2B receptor 5TVN D3 receptor 3PBL
TM6 392 6.33x33 5-HT2B receptor 5TVN 5-HT2B receptor 5TVN
TM6 393 6.34x34 5-HT2B receptor 5TVN - -
TM6 394 6.35x35 5-HT2B receptor 5TVN M1 receptor 5CXV
TM6 395 6.36x36 D4 receptor 5WIV D4 receptor 5WIV
TM6 396 6.37x37 D4 receptor 5WIV D4 receptor 5WIV
TM6 397 6.38x38 D4 receptor 5WIV D4 receptor 5WIV
TM6 398 6.39x39 D4 receptor 5WIV D4 receptor 5WIV
TM6 399 6.40x40 D4 receptor 5WIV D4 receptor 5WIV
TM6 400 6.41x41 D4 receptor 5WIV D4 receptor 5WIV
TM6 401 6.42x42 D4 receptor 5WIV D4 receptor 5WIV
TM6 402 6.43x43 D4 receptor 5WIV D4 receptor 5WIV
TM6 403 6.44x44 D4 receptor 5WIV D4 receptor 5WIV
TM6 404 6.45x45 D4 receptor 5WIV D4 receptor 5WIV
TM6 405 6.46x46 D4 receptor 5WIV D4 receptor 5WIV
TM6 406 6.47x47 D4 receptor 5WIV D4 receptor 5WIV
TM6 407 6.48x48 D4 receptor 5WIV D4 receptor 5WIV
TM6 408 6.49x49 D4 receptor 5WIV D4 receptor 5WIV
TM6 409 6.50x50 D4 receptor 5WIV D4 receptor 5WIV
TM6 410 6.51x51 D4 receptor 5WIV D4 receptor 5WIV
TM6 411 6.52x52 D4 receptor 5WIV D4 receptor 5WIV
TM6 412 6.53x53 D4 receptor 5WIV D4 receptor 5WIV
TM6 413 6.54x54 D4 receptor 5WIV D4 receptor 5WIV
TM6 414 6.55x55 D4 receptor 5WIV D4 receptor 5WIV
TM6 415 6.56x56 D4 receptor 5WIV D4 receptor 5WIV
TM6 416 6.57x57 D4 receptor 5WIV D4 receptor 5WIV
TM6 417 6.58x58 D4 receptor 5WIV D4 receptor 5WIV
TM6 418 6.59x59 D4 receptor 5WIV D4 receptor 5WIV
TM6 419 6.60x60 D4 receptor 5WIV D4 receptor 5WIV
TM6 420 6.61x61 D4 receptor 5WIV D4 receptor 5WIV
ECL3 421 D4 receptor 5WIV D4 receptor 5WIV
ECL3 422 D4 receptor 5WIV D4 receptor 5WIV
ECL3 423 D4 receptor 5WIV D4 receptor 5WIV
ECL3 424 D4 receptor 5WIV D4 receptor 5WIV
ECL3 425 D4 receptor 5WIV D4 receptor 5WIV
TM7 426 7.31x30 D4 receptor 5WIV D4 receptor 5WIV
TM7 427 7.32x31 D4 receptor 5WIV D4 receptor 5WIV
TM7 428 7.33x32 D4 receptor 5WIV D4 receptor 5WIU
TM7 429 7.34x33 D4 receptor 5WIV D4 receptor 5WIV
TM7 430 7.35x34 D4 receptor 5WIV D4 receptor 5WIV
TM7 431 7.36x35 D4 receptor 5WIV D4 receptor 5WIV
TM7 432 7.37x36 D4 receptor 5WIV D4 receptor 5WIV
TM7 433 7.38x37 D4 receptor 5WIV D4 receptor 5WIV
TM7 434 7.39x38 D4 receptor 5WIV D4 receptor 5WIV
TM7 435 7.40x39 D4 receptor 5WIV D4 receptor 5WIV
TM7 436 7.41x40 D4 receptor 5WIV D4 receptor 5WIV
TM7 437 7.42x41 D4 receptor 5WIV D4 receptor 5WIV
TM7 438 7.43x42 D4 receptor 5WIV D4 receptor 5WIV
TM7 439 7.44x43 D4 receptor 5WIV D4 receptor 5WIV
TM7 440 7.45x45 D4 receptor 5WIV D4 receptor 5WIV
TM7 441 7.46x46 D4 receptor 5WIV D4 receptor 5WIV
TM7 442 7.47x47 D4 receptor 5WIV D4 receptor 5WIV
TM7 443 7.48x48 D4 receptor 5WIV D4 receptor 5WIV
TM7 444 7.49x49 D4 receptor 5WIV D4 receptor 5WIV
TM7 445 7.50x50 D4 receptor 5WIV D4 receptor 5WIV
TM7 446 7.51x51 D4 receptor 5WIV D4 receptor 5WIV
TM7 447 7.52x52 D4 receptor 5WIV D4 receptor 5WIV
TM7 448 7.53x53 D4 receptor 5WIV D4 receptor 5WIV
TM7 449 7.54x54 D4 receptor 5WIV D4 receptor 5WIV
TM7 450 7.55x55 D4 receptor 5WIV D4 receptor 5WIV
TM7 451 7.56x56 D4 receptor 5WIV D4 receptor 5WIV
H8 452 8.47x47 D4 receptor 5WIV D4 receptor 5WIV
H8 453 8.48x48 D4 receptor 5WIV D4 receptor 5WIV
H8 454 8.49x49 D4 receptor 5WIV D3 receptor 3PBL
H8 455 8.50x50 D4 receptor 5WIV D4 receptor 5WIV
H8 456 8.51x51 D4 receptor 5WIV D4 receptor 5WIV
H8 457 8.52x52 D4 receptor 5WIV D4 receptor 5WIV
H8 458 8.53x53 D4 receptor 5WIV D4 receptor 5WIV
H8 459 8.54x54 D4 receptor 5WIV D4 receptor 5WIV
H8 460 8.55x55 D4 receptor 5WIV M1 receptor 5CXV
H8 461 8.56x56 D4 receptor 5WIV D3 receptor 3PBL
H8 462 8.57x57 D4 receptor 5WIV D4 receptor 5WIV
H8 463 8.58x58 D3 receptor 3PBL D3 receptor 3PBL
H8 464 8.59x59 D3 receptor 3PBL 5-HT2C receptor 6BQH
C-term 465 - - - -
C-term 466 - - - -
C-term 467 - - - -