B1 receptor homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Intermediate (Δ distance (Å): 7.17 docs)

VERSION

2018-07-10

MAIN TEMPLATE

μ receptor (sequence similarity: 44%) PDB: 6DDE

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 73.2 21.2 5.6
Side-chains 18.3 62.4 19.3

Number of backbone templates: 4
Number of rotamer templates: 37

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4ZUD
6DDE
5UIW
5UNF
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 30 AT1 receptor 4ZUD AT1 receptor 4ZUD
N-term 31 AT1 receptor 4ZUD AT1 receptor 4ZUD
N-term 32 AT1 receptor 4ZUD AT1 receptor 4ZUD
N-term 33 AT1 receptor 4ZUD AT1 receptor 4ZUD
N-term 34 AT1 receptor 4ZUD AT1 receptor 4ZUD
TM1 35 1.30x30 AT1 receptor 4ZUD PAR2 5NDD
TM1 36 1.31x31 μ receptor 6DDE PAR1 3VW7
TM1 37 1.32x32 μ receptor 6DDE - -
TM1 38 1.33x33 μ receptor 6DDE CCR5 5UIW
TM1 39 1.34x34 μ receptor 6DDE A2A receptor 4UHR
TM1 40 1.35x35 μ receptor 6DDE P2Y1 receptor 4XNW
TM1 41 1.36x36 μ receptor 6DDE P2Y1 receptor 4XNW
TM1 42 1.37x37 μ receptor 6DDE A2A receptor 4UHR
TM1 43 1.38x38 μ receptor 6DDE - -
TM1 44 1.39x39 μ receptor 6DDE 5-HT2C receptor 6BQH
TM1 45 1.40x40 μ receptor 6DDE P2Y1 receptor 4XNW
TM1 46 1.41x41 μ receptor 6DDE M4 receptor 5DSG
TM1 47 1.42x42 μ receptor 6DDE PAF receptor 5ZKQ
TM1 48 1.43x43 μ receptor 6DDE δ receptor 4N6H
TM1 49 1.44x44 μ receptor 6DDE P2Y12 receptor 4NTJ
TM1 50 1.45x45 μ receptor 6DDE CCR5 5UIW
TM1 51 1.46x46 μ receptor 6DDE μ receptor 6DDE
TM1 52 1.47x47 μ receptor 6DDE PAR1 3VW7
TM1 53 1.48x48 μ receptor 6DDE P2Y1 receptor 4XNW
TM1 54 1.49x49 μ receptor 6DDE μ receptor 6DDE
TM1 55 1.50x50 μ receptor 6DDE μ receptor 6DDE
TM1 56 1.51x51 μ receptor 6DDE Y1 receptor 5ZBH
TM1 57 1.52x52 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM1 58 1.53x53 μ receptor 6DDE μ receptor 6DDE
TM1 59 1.54x54 μ receptor 6DDE PAR2 5NDD
TM1 60 1.55x55 μ receptor 6DDE 5-HT2B receptor 4IB4
TM1 61 1.56x56 μ receptor 6DDE μ receptor 6DDE
TM1 62 1.57x57 μ receptor 6DDE P2Y1 receptor 4XNW
TM1 63 1.58x58 μ receptor 6DDE PAR2 5NDD
TM1 64 1.59x59 μ receptor 6DDE PAR1 3VW7
TM1 65 1.60x60 μ receptor 6DDE - -
ICL1 66 12.48x48 - - - -
ICL1 67 12.49x49 AT1 receptor 4ZUD β2-adrenoceptor 5JQH
ICL1 68 12.50x50 AT1 receptor 4ZUD - -
ICL1 69 12.51x51 - - - -
TM2 70 2.37x37 AT1 receptor 4ZUD A2A receptor 4UHR
TM2 71 2.38x38 μ receptor 6DDE A2A receptor 4UHR
TM2 72 2.39x39 μ receptor 6DDE PAR1 3VW7
TM2 73 2.40x40 μ receptor 6DDE - -
TM2 74 2.41x41 μ receptor 6DDE μ receptor 6DDE
TM2 75 2.42x42 μ receptor 6DDE μ receptor 6DDE
TM2 76 2.43x43 μ receptor 6DDE 5-HT2B receptor 4IB4
TM2 77 2.44x44 μ receptor 6DDE PAR2 5NDD
TM2 78 2.45x45 μ receptor 6DDE μ receptor 6DDE
TM2 79 2.46x46 μ receptor 6DDE μ receptor 6DDE
TM2 80 2.47x47 μ receptor 6DDE μ receptor 6DDE
TM2 81 2.48x48 μ receptor 6DDE A2A receptor 4UHR
TM2 82 2.49x49 μ receptor 6DDE NTS1 receptor 4XES
TM2 83 2.50x50 μ receptor 6DDE μ receptor 6DDE
TM2 84 2.51x51 μ receptor 6DDE PAR2 5NDD
TM2 85 2.52x52 μ receptor 6DDE β2-adrenoceptor 3SN6
TM2 86 2.53x53 μ receptor 6DDE PAR1 3VW7
TM2 87 2.54x54 μ receptor 6DDE P2Y1 receptor 4XNW
TM2 88 2.55x55 μ receptor 6DDE P2Y1 receptor 4XNW
TM2 89 2.56x56 μ receptor 6DDE Rhodopsin 5DYS
TM2 90 2.57x57 μ receptor 6DDE μ receptor 6DDE
TM2 91 2.58x58 μ receptor 6DDE μ receptor 6DDE
TM2 92 2.59x59 μ receptor 6DDE μ receptor 6DDE
TM2 93 2.60x60 μ receptor 6DDE PAF receptor 5ZKQ
TM2 94 2.61x61 μ receptor 6DDE FFA1 receptor 5TZY
TM2 95 2.62x62 μ receptor 6DDE - -
TM2 96 2.63x63 μ receptor 6DDE μ receptor 6DDE
TM2 97 2.64x64 μ receptor 6DDE 5-HT2B receptor 4IB4
TM2 98 2.65x65 μ receptor 6DDE - -
TM2 99 2.66x66 μ receptor 6DDE P2Y1 receptor 4XNW
ECL1 100 - - - -
ECL1 101 AT1 receptor 4ZUD - -
ECL1 102 23.49x49 AT1 receptor 4ZUD PAR2 5NDD
ECL1 103 23.50x50 AT1 receptor 4ZUD AT1 receptor 4ZUD
ECL1 104 23.51x51 AT1 receptor 4ZUD AT1 receptor 4ZUD
ECL1 105 23.52x52 - - - -
TM3 106 3.21x21 μ receptor 6DDE μ receptor 6DDE
TM3 107 3.22x22 μ receptor 6DDE FFA1 receptor 5TZY
TM3 108 3.23x23 μ receptor 6DDE δ receptor 4N6H
TM3 109 3.24x24 μ receptor 6DDE μ receptor 6DDE
TM3 110 3.25x25 μ receptor 6DDE μ receptor 6DDE
TM3 111 3.26x26 μ receptor 6DDE PAR1 3VW7
TM3 112 3.27x27 μ receptor 6DDE PAR2 5NDD
TM3 113 3.28x28 μ receptor 6DDE A2A receptor 4UHR
TM3 114 3.29x29 μ receptor 6DDE CCR9 5LWE
TM3 115 3.30x30 μ receptor 6DDE PAR2 5NDD
TM3 116 3.31x31 μ receptor 6DDE Y1 receptor 5ZBH
TM3 117 3.32x32 μ receptor 6DDE apelin receptor 5VBL
TM3 118 3.33x33 μ receptor 6DDE CCR9 5LWE
TM3 119 3.34x34 μ receptor 6DDE PAR2 5NDD
TM3 120 3.35x35 μ receptor 6DDE μ receptor 6DDE
TM3 121 3.36x36 μ receptor 6DDE P2Y1 receptor 4XNW
TM3 122 3.37x37 μ receptor 6DDE μ receptor 6DDE
TM3 123 3.38x38 μ receptor 6DDE P2Y12 receptor 4NTJ
TM3 124 3.39x39 μ receptor 6DDE μ receptor 6DDE
TM3 125 3.40x40 μ receptor 6DDE μ receptor 6DDE
TM3 126 3.41x41 μ receptor 6DDE μ receptor 6DDE
TM3 127 3.42x42 μ receptor 6DDE PAR1 3VW7
TM3 128 3.43x43 μ receptor 6DDE NTS1 receptor 4XES
TM3 129 3.44x44 μ receptor 6DDE Y1 receptor 5ZBH
TM3 130 3.45x45 μ receptor 6DDE 5-HT2B receptor 4IB4
TM3 131 3.46x46 μ receptor 6DDE P2Y1 receptor 4XNW
TM3 132 3.47x47 μ receptor 6DDE μ receptor 6DDE
TM3 133 3.48x48 μ receptor 6DDE - -
TM3 134 3.49x49 μ receptor 6DDE μ receptor 6DDE
TM3 135 3.50x50 μ receptor 6DDE μ receptor 6DDE
TM3 136 3.51x51 μ receptor 6DDE μ receptor 6DDE
TM3 137 3.52x52 μ receptor 6DDE ETB receptor 5X93
TM3 138 3.53x53 μ receptor 6DDE Rhodopsin 5DYS
TM3 139 3.54x54 μ receptor 6DDE - -
TM3 140 3.55x55 μ receptor 6DDE P2Y1 receptor 4XNW
TM3 141 3.56x56 μ receptor 6DDE μ receptor 6DDE
ICL2 142 34.50x50 - - - -
ICL2 143 34.51x51 CCR5 5UIW CCR9 5LWE
ICL2 144 34.52x52 CCR5 5UIW CB1 receptor 5XRA
ICL2 145 34.53x53 CCR5 5UIW P2Y1 receptor 4XNW
ICL2 146 34.54x54 CCR5 5UIW LPA6 receptor 5XSZ
ICL2 147 34.55x55 CCR5 5UIW C5a1 receptor 5O9H
ICL2 148 34.56x56 CCR5 5UIW - -
ICL2 149 34.57x57 - - - -
TM4 150 4.38x38 μ receptor 6DDE FFA1 receptor 5TZY
TM4 151 4.39x39 μ receptor 6DDE PAF receptor 5ZKQ
TM4 152 4.40x40 μ receptor 6DDE μ receptor 6DDE
TM4 153 4.41x41 μ receptor 6DDE AT2 receptor 5UNG
TM4 154 4.42x42 μ receptor 6DDE μ receptor 6DDE
TM4 155 4.43x43 μ receptor 6DDE OX2 receptor 5WS3
TM4 156 4.44x44 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM4 157 4.45x45 μ receptor 6DDE PAR1 3VW7
TM4 158 4.46x46 μ receptor 6DDE PAR1 3VW7
TM4 159 4.47x47 μ receptor 6DDE μ receptor 6DDE
TM4 160 4.48x48 μ receptor 6DDE P2Y1 receptor 4XNW
TM4 161 4.49x49 μ receptor 6DDE PAR1 3VW7
TM4 162 4.50x50 μ receptor 6DDE μ receptor 6DDE
TM4 163 4.51x51 μ receptor 6DDE PAF receptor 5ZKQ
TM4 164 4.52x52 μ receptor 6DDE CCR5 5UIW
TM4 165 4.53x53 μ receptor 6DDE - -
TM4 166 4.54x54 μ receptor 6DDE AT1 receptor 4ZUD
TM4 167 4.55x55 μ receptor 6DDE PAR2 5NDD
TM4 168 4.56x56 μ receptor 6DDE NTS1 receptor 4XES
TM4 169 4.57x57 AT1 receptor 4ZUD P2Y12 receptor 4NTJ
TM4 170 4.58x59 AT1 receptor 4ZUD PAR2 5NDD
TM4 171 4.59x60 μ receptor 6DDE PAR1 3VW7
TM4 172 4.60x61 μ receptor 6DDE AT2 receptor 5UNG
TM4 173 4.61x62 μ receptor 6DDE μ receptor 6DDE
TM4 174 4.62x63 AT1 receptor 4ZUD PAR1 3VW7
TM4 175 4.63x64 AT1 receptor 4ZUD apelin receptor 5VBL
TM4 176 4.64x65 AT1 receptor 4ZUD AT1 receptor 4ZUD
ECL2 177 - - - -
ECL2 178 AT1 receptor 4ZUD - -
ECL2 179 AT1 receptor 4ZUD - -
ECL2 180 AT1 receptor 4ZUD - -
ECL2 181 AT1 receptor 4ZUD - -
ECL2 182 AT1 receptor 4ZUD - -
ECL2 183 AT1 receptor 4ZUD - -
ECL2 184 AT1 receptor 4ZUD - -
ECL2 185 AT1 receptor 4ZUD AT1 receptor 4ZUD
ECL2 186 AT1 receptor 4ZUD AT1 receptor 4ZUD
ECL2 187 AT1 receptor 4ZUD AT1 receptor 4ZUD
ECL2 188 - - - -
ECL2 189 45.50x50 μ receptor 6DDE μ receptor 6DDE
ECL2 190 45.51x51 μ receptor 6DDE AT2 receptor 5UNG
ECL2 191 45.52x52 μ receptor 6DDE μ receptor 6DDE
ECL2 192 - - - -
ECL2 193 AT2 receptor 5UNF - -
ECL2 194 AT2 receptor 5UNF AT2 receptor 5UNF
ECL2 195 AT2 receptor 5UNF - -
ECL2 196 AT2 receptor 5UNF AT2 receptor 5UNF
ECL2 197 - - - -
TM5 198 5.34x35 μ receptor 6DDE μ receptor 6DDE
TM5 199 5.35x36 μ receptor 6DDE P2Y12 receptor 4NTJ
TM5 200 5.36x37 μ receptor 6DDE P2Y1 receptor 4XNW
TM5 201 5.37x38 μ receptor 6DDE C5a1 receptor 5O9H
TM5 202 5.38x39 μ receptor 6DDE - -
TM5 203 5.39x40 μ receptor 6DDE NTS1 receptor 4XES
TM5 204 5.40x41 μ receptor 6DDE A2A receptor 4UHR
TM5 205 5.41x42 μ receptor 6DDE US28 4XT1
TM5 206 5.42x43 μ receptor 6DDE PAR2 5NDD
TM5 207 5.43x44 μ receptor 6DDE AT1 receptor 4ZUD
TM5 208 5.44x45 μ receptor 6DDE PAR2 5NDD
TM5 209 5.45x46 μ receptor 6DDE FFA1 receptor 5TZY
TM5 210 5.46x461 μ receptor 6DDE AT1 receptor 4ZUD
TM5 211 5.47x47 μ receptor 6DDE μ receptor 6DDE
TM5 212 5.48x48 μ receptor 6DDE PAR2 5NDD
TM5 213 5.49x49 μ receptor 6DDE PAF receptor 5ZKQ
TM5 214 5.50x50 μ receptor 6DDE μ receptor 6DDE
TM5 215 5.51x51 μ receptor 6DDE P2Y1 receptor 4XNW
TM5 216 5.52x52 μ receptor 6DDE 5-HT2B receptor 4IB4
TM5 217 5.53x53 μ receptor 6DDE - -
TM5 218 5.54x54 μ receptor 6DDE μ receptor 6DDE
TM5 219 5.55x55 μ receptor 6DDE CCR5 5UIW
TM5 220 5.56x56 μ receptor 6DDE PAF receptor 5ZKQ
TM5 221 5.57x57 μ receptor 6DDE ETB receptor 5X93
TM5 222 5.58x58 μ receptor 6DDE PAF receptor 5ZKQ
TM5 223 5.59x59 μ receptor 6DDE US28 4XT1
TM5 224 5.60x60 μ receptor 6DDE M4 receptor 5DSG
TM5 225 5.61x61 μ receptor 6DDE P2Y1 receptor 4XNW
TM5 226 5.62x62 μ receptor 6DDE FFA1 receptor 5TZY
TM5 227 5.63x63 μ receptor 6DDE A2A receptor 5IU4
TM5 228 5.64x64 μ receptor 6DDE - -
TM5 229 5.65x65 μ receptor 6DDE μ receptor 6DDE
TM5 230 5.66x66 μ receptor 6DDE A2A receptor 4UHR
TM5 231 5.67x67 μ receptor 6DDE S1P1 receptor 3V2Y
TM5 232 5.68x68 μ receptor 6DDE C5a1 receptor 6C1R
ICL3 233 μ receptor 6DDE - -
ICL3 234 μ receptor 6DDE - -
ICL3 235 μ receptor 6DDE - -
ICL3 236 μ receptor 6DDE μ receptor 6DDE
ICL3 237 μ receptor 6DDE - -
TM6 238 6.23x23 μ receptor 6DDE - -
TM6 239 6.24x24 μ receptor 6DDE A2A receptor 4UHR
TM6 240 6.25x25 μ receptor 6DDE - -
TM6 241 6.26x26 μ receptor 6DDE - -
TM6 242 6.27x27 μ receptor 6DDE CXCR4 3ODU
TM6 243 6.28x28 μ receptor 6DDE μ receptor 6DDE
TM6 244 6.29x29 μ receptor 6DDE PAR2 5NDD
TM6 245 6.30x30 μ receptor 6DDE CB1 receptor 5XRA
TM6 246 6.31x31 μ receptor 6DDE - -
TM6 247 6.32x32 μ receptor 6DDE PAR2 5NDD
TM6 248 6.33x33 μ receptor 6DDE C5a1 receptor 5O9H
TM6 249 6.34x34 μ receptor 6DDE μ receptor 6DDE
TM6 250 6.35x35 μ receptor 6DDE FFA1 receptor 5TZY
TM6 251 6.36x36 μ receptor 6DDE CCR5 5UIW
TM6 252 6.37x37 μ receptor 6DDE AT1 receptor 4ZUD
TM6 253 6.38x38 μ receptor 6DDE μ receptor 6DDE
TM6 254 6.39x39 μ receptor 6DDE CCR5 5UIW
TM6 255 6.40x40 μ receptor 6DDE CXCR4 3ODU
TM6 256 6.41x41 μ receptor 6DDE μ receptor 6DDE
TM6 257 6.42x42 μ receptor 6DDE apelin receptor 5VBL
TM6 258 6.43x43 μ receptor 6DDE PAR2 5NDD
TM6 259 6.44x44 μ receptor 6DDE μ receptor 6DDE
TM6 260 6.45x45 μ receptor 6DDE 5-HT2B receptor 4IB4
TM6 261 6.46x46 μ receptor 6DDE NTS1 receptor 4XES
TM6 262 6.47x47 μ receptor 6DDE PAR1 3VW7
TM6 263 6.48x48 μ receptor 6DDE μ receptor 6DDE
TM6 264 6.49x49 μ receptor 6DDE CCR5 5UIW
TM6 265 6.50x50 μ receptor 6DDE μ receptor 6DDE
TM6 266 6.51x51 μ receptor 6DDE NTS1 receptor 4XES
TM6 267 6.52x52 μ receptor 6DDE μ receptor 6DDE
TM6 268 6.53x53 μ receptor 6DDE P2Y12 receptor 4NTJ
TM6 269 6.54x54 μ receptor 6DDE AT1 receptor 4ZUD
TM6 270 6.55x55 μ receptor 6DDE Rhodopsin 5DYS
TM6 271 6.56x56 μ receptor 6DDE AT1 receptor 4ZUD
TM6 272 6.57x57 μ receptor 6DDE AT1 receptor 4ZUD
TM6 273 6.58x58 μ receptor 6DDE κ receptor 4DJH
TM6 274 6.59x59 μ receptor 6DDE A2A receptor 4UHR
TM6 275 6.60x60 μ receptor 6DDE 5-HT2B receptor 4IB4
TM6 276 6.61x61 μ receptor 6DDE OX1 receptor 4ZJ8
TM6 277 6.62x62 AT1 receptor 4ZUD AT1 receptor 4ZUD
TM6 278 6.63x63 AT1 receptor 4ZUD - -
TM6 279 6.64x64 AT1 receptor 4ZUD - -
ECL3 280 - - - -
ECL3 281 AT1 receptor 4ZUD - -
ECL3 282 - - - -
TM7 283 7.24x23 AT1 receptor 4ZUD CXCR4 3ODU
TM7 284 7.25x24 AT1 receptor 4ZUD AT1 receptor 4ZUD
TM7 285 7.26x25 AT1 receptor 4ZUD NTS1 receptor 4XES
TM7 286 7.27x26 AT1 receptor 4ZUD - -
TM7 287 7.28x27 AT1 receptor 4ZUD P2Y12 receptor 4NTJ
TM7 288 7.29x28 AT1 receptor 4ZUD AT1 receptor 4ZUD
TM7 289 7.30x29 μ receptor 6DDE NTS1 receptor 4XES
TM7 290 7.31x30 μ receptor 6DDE PAF receptor 5ZKQ
TM7 291 7.32x31 μ receptor 6DDE AT1 receptor 4ZUD
TM7 292 7.33x32 μ receptor 6DDE AT2 receptor 5UNG
TM7 293 7.34x33 μ receptor 6DDE - -
TM7 294 7.35x34 μ receptor 6DDE 5-HT2B receptor 4IB4
TM7 295 7.36x35 μ receptor 6DDE P2Y1 receptor 4XNW
TM7 296 7.37x36 μ receptor 6DDE PAR1 3VW7
TM7 297 7.38x37 μ receptor 6DDE PAR2 5NDD
TM7 298 7.39x38 μ receptor 6DDE NTS1 receptor 4XES
TM7 299 7.40x39 μ receptor 6DDE Rhodopsin 5DYS
TM7 300 7.41x40 μ receptor 6DDE C5a1 receptor 5O9H
TM7 301 7.42x41 μ receptor 6DDE P2Y1 receptor 4XNW
TM7 302 7.43x42 μ receptor 6DDE CXCR4 3ODU
TM7 303 7.44x43 μ receptor 6DDE PAF receptor 5ZKQ
TM7 304 7.45x45 μ receptor 6DDE μ receptor 6DDE
TM7 305 7.46x46 μ receptor 6DDE μ receptor 6DDE
TM7 306 7.47x47 μ receptor 6DDE δ receptor 4N6H
TM7 307 7.48x48 μ receptor 6DDE μ receptor 6DDE
TM7 308 7.49x49 μ receptor 6DDE μ receptor 6DDE
TM7 309 7.50x50 μ receptor 6DDE μ receptor 6DDE
TM7 310 7.51x51 μ receptor 6DDE μ receptor 6DDE
TM7 311 7.52x52 μ receptor 6DDE PAR1 3VW7
TM7 312 7.53x53 μ receptor 6DDE μ receptor 6DDE
TM7 313 7.54x54 μ receptor 6DDE CCR9 5LWE
TM7 314 7.55x55 CCR5 5UIW CCR5 5UIW
TM7 315 7.56x56 CCR5 5UIW CCR5 5UIW
H8 316 8.47x47 CCR5 5UIW CCR5 5UIW
H8 317 8.48x48 CCR5 5UIW A2A receptor 4UHR
H8 318 8.49x49 CCR5 5UIW - -
H8 319 8.50x50 CCR5 5UIW PAR2 5NDD
H8 320 8.51x51 CCR5 5UIW PAR2 5NDD
H8 321 8.52x52 CCR5 5UIW M3 receptor 4U15
H8 322 8.53x53 CCR5 5UIW CCR5 5UIW
H8 323 8.54x54 CCR5 5UIW - -
H8 324 8.55x55 CCR5 5UIW - -
H8 325 8.56x56 CCR5 5UIW β2-adrenoceptor 3SN6
H8 326 8.57x57 CCR5 5UIW 5-HT1B receptor 4IAQ
H8 327 8.58x58 CCR5 5UIW - -
H8 328 8.59x59 CCR5 5UIW CCR9 5LWE
H8 329 8.60x60 CCR5 5UIW - -
H8 330 8.61x61 CCR5 5UIW OX2 receptor 5WS3
C-term 331 - - - -
C-term 332 - - - -
C-term 333 - - - -
C-term 334 - - - -
C-term 335 - - - -