B2 receptor homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Intermediate (Δ distance (Å): 7.23 docs)

VERSION

2018-07-10

MAIN TEMPLATE

μ receptor (sequence similarity: 45%) PDB: 6DDE

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 72.3 19.8 7.9
Side-chains 20.8 57.4 21.8

Number of backbone templates: 6
Number of rotamer templates: 36

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6DDE
4ZUD
5UNG
5T1A
5X93
4XT1
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 53 - - - -
N-term 54 - - - -
N-term 55 - - - -
N-term 56 μ receptor 6DDE μ receptor 6DDE
N-term 57 μ receptor 6DDE μ receptor 6DDE
TM1 58 1.33x33 μ receptor 6DDE PAF receptor 5ZKQ
TM1 59 1.34x34 μ receptor 6DDE κ receptor 4DJH
TM1 60 1.35x35 μ receptor 6DDE - -
TM1 61 1.36x36 μ receptor 6DDE PAF receptor 5ZKQ
TM1 62 1.37x37 μ receptor 6DDE CCR2 5T1A
TM1 63 1.38x38 μ receptor 6DDE - -
TM1 64 1.39x39 μ receptor 6DDE 5-HT2B receptor 4IB4
TM1 65 1.40x40 μ receptor 6DDE CCR9 5LWE
TM1 66 1.41x41 μ receptor 6DDE P2Y12 receptor 4NTJ
TM1 67 1.42x42 μ receptor 6DDE P2Y12 receptor 4NTJ
TM1 68 1.43x43 μ receptor 6DDE PAF receptor 5ZKQ
TM1 69 1.44x44 μ receptor 6DDE PAF receptor 5ZKQ
TM1 70 1.45x45 μ receptor 6DDE PAF receptor 5ZKQ
TM1 71 1.46x46 μ receptor 6DDE PAR2 5NDD
TM1 72 1.47x47 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM1 73 1.48x48 μ receptor 6DDE P2Y1 receptor 4XNW
TM1 74 1.49x49 μ receptor 6DDE CB1 receptor 5XRA
TM1 75 1.50x50 μ receptor 6DDE μ receptor 6DDE
TM1 76 1.51x51 μ receptor 6DDE PAR1 3VW7
TM1 77 1.52x52 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM1 78 1.53x53 μ receptor 6DDE μ receptor 6DDE
TM1 79 1.54x54 μ receptor 6DDE PAF receptor 5ZKQ
TM1 80 1.55x55 μ receptor 6DDE - -
TM1 81 1.56x56 μ receptor 6DDE μ receptor 6DDE
TM1 82 1.57x57 μ receptor 6DDE PAF receptor 5ZKQ
TM1 83 1.58x58 μ receptor 6DDE AT2 receptor 5UNG
TM1 84 1.59x59 μ receptor 6DDE PAR1 3VW7
TM1 85 1.60x60 μ receptor 6DDE P2Y1 receptor 4XNW
ICL1 86 12.48x48 - - - -
ICL1 87 12.49x49 AT1 receptor 4ZUD CB1 receptor 5TGZ
ICL1 88 12.50x50 AT1 receptor 4ZUD - -
ICL1 89 12.51x51 - - - -
TM2 90 2.37x37 AT1 receptor 4ZUD AT1 receptor 4ZUD
TM2 91 2.38x38 μ receptor 6DDE A2A receptor 4UHR
TM2 92 2.39x39 μ receptor 6DDE PAR2 5NDD
TM2 93 2.40x40 μ receptor 6DDE - -
TM2 94 2.41x41 μ receptor 6DDE μ receptor 6DDE
TM2 95 2.42x42 μ receptor 6DDE μ receptor 6DDE
TM2 96 2.43x43 μ receptor 6DDE P2Y12 receptor 4NTJ
TM2 97 2.44x44 μ receptor 6DDE NTS1 receptor 4XES
TM2 98 2.45x45 μ receptor 6DDE μ receptor 6DDE
TM2 99 2.46x46 μ receptor 6DDE μ receptor 6DDE
TM2 100 2.47x47 μ receptor 6DDE μ receptor 6DDE
TM2 101 2.48x48 μ receptor 6DDE A2A receptor 4UHR
TM2 102 2.49x49 μ receptor 6DDE μ receptor 6DDE
TM2 103 2.50x50 μ receptor 6DDE μ receptor 6DDE
TM2 104 2.51x51 μ receptor 6DDE PAR2 5NDD
TM2 105 2.52x52 μ receptor 6DDE H1 receptor 3RZE
TM2 106 2.53x53 μ receptor 6DDE FFA1 receptor 5TZY
TM2 107 2.54x54 μ receptor 6DDE D2 receptor 6CM4
TM2 108 2.55x55 μ receptor 6DDE US28 4XT1
TM2 109 2.56x56 μ receptor 6DDE Rhodopsin 5DYS
TM2 110 2.57x57 μ receptor 6DDE μ receptor 6DDE
TM2 111 2.58x58 μ receptor 6DDE μ receptor 6DDE
TM2 112 2.59x59 μ receptor 6DDE μ receptor 6DDE
TM2 113 2.60x60 μ receptor 6DDE PAF receptor 5ZKQ
TM2 114 2.61x61 μ receptor 6DDE FFA1 receptor 5TZY
TM2 115 2.62x62 μ receptor 6DDE CCR9 5LWE
TM2 116 2.63x63 μ receptor 6DDE 5-HT2B receptor 4IB4
TM2 117 2.64x64 μ receptor 6DDE 5-HT2B receptor 4IB4
TM2 118 2.65x65 μ receptor 6DDE AT2 receptor 5UNG
TM2 119 2.66x66 μ receptor 6DDE PAF receptor 5ZKQ
ECL1 120 - - - -
ECL1 121 AT2 receptor 5UNG - -
ECL1 122 23.49x49 AT2 receptor 5UNG P2Y1 receptor 4XNW
ECL1 123 23.50x50 AT2 receptor 5UNG AT2 receptor 5UNG
ECL1 124 23.51x51 AT2 receptor 5UNG AT2 receptor 5UNG
ECL1 125 23.52x52 - - - -
TM3 126 3.21x21 μ receptor 6DDE μ receptor 6DDE
TM3 127 3.22x22 μ receptor 6DDE PAR2 5NDD
TM3 128 3.23x23 μ receptor 6DDE CCR5 5UIW
TM3 129 3.24x24 μ receptor 6DDE μ receptor 6DDE
TM3 130 3.25x25 μ receptor 6DDE μ receptor 6DDE
TM3 131 3.26x26 μ receptor 6DDE PAR1 3VW7
TM3 132 3.27x27 μ receptor 6DDE PAF receptor 5ZKQ
TM3 133 3.28x28 μ receptor 6DDE μ receptor 6DDE
TM3 134 3.29x29 μ receptor 6DDE CCR9 5LWE
TM3 135 3.30x30 μ receptor 6DDE PAR1 3VW7
TM3 136 3.31x31 μ receptor 6DDE μ receptor 6DDE
TM3 137 3.32x32 μ receptor 6DDE apelin receptor 5VBL
TM3 138 3.33x33 μ receptor 6DDE AT1 receptor 4ZUD
TM3 139 3.34x34 μ receptor 6DDE CCR9 5LWE
TM3 140 3.35x35 μ receptor 6DDE μ receptor 6DDE
TM3 141 3.36x36 μ receptor 6DDE P2Y1 receptor 4XNW
TM3 142 3.37x37 μ receptor 6DDE PAF receptor 5ZKQ
TM3 143 3.38x38 μ receptor 6DDE A2A receptor 4UHR
TM3 144 3.39x39 μ receptor 6DDE μ receptor 6DDE
TM3 145 3.40x40 μ receptor 6DDE μ receptor 6DDE
TM3 146 3.41x41 μ receptor 6DDE US28 4XT1
TM3 147 3.42x42 μ receptor 6DDE PAF receptor 5ZKQ
TM3 148 3.43x43 μ receptor 6DDE μ receptor 6DDE
TM3 149 3.44x44 μ receptor 6DDE CCR9 5LWE
TM3 150 3.45x45 μ receptor 6DDE P2Y12 receptor 4NTJ
TM3 151 3.46x46 μ receptor 6DDE - -
TM3 152 3.47x47 μ receptor 6DDE μ receptor 6DDE
TM3 153 3.48x48 μ receptor 6DDE PAR1 3VW7
TM3 154 3.49x49 μ receptor 6DDE μ receptor 6DDE
TM3 155 3.50x50 μ receptor 6DDE μ receptor 6DDE
TM3 156 3.51x51 μ receptor 6DDE μ receptor 6DDE
TM3 157 3.52x52 μ receptor 6DDE PAR1 3VW7
TM3 158 3.53x53 μ receptor 6DDE μ receptor 6DDE
TM3 159 3.54x54 μ receptor 6DDE - -
TM3 160 3.55x55 μ receptor 6DDE P2Y1 receptor 4XNW
TM3 161 3.56x56 μ receptor 6DDE 5-HT2B receptor 4IB4
ICL2 162 34.50x50 - - - -
ICL2 163 34.51x51 CCR2 5T1A CCR9 5LWE
ICL2 164 34.52x52 CCR2 5T1A Rhodopsin 4ZWJ
ICL2 165 34.53x53 CCR2 5T1A - -
ICL2 166 34.54x54 CCR2 5T1A - -
ICL2 167 34.55x55 CCR2 5T1A C5a1 receptor 5O9H
ICL2 168 34.56x56 CCR2 5T1A - -
ICL2 169 34.57x57 - - - -
TM4 170 4.38x38 μ receptor 6DDE C5a1 receptor 5O9H
TM4 171 4.39x39 μ receptor 6DDE CCR2 5T1A
TM4 172 4.40x40 μ receptor 6DDE μ receptor 6DDE
TM4 173 4.41x41 μ receptor 6DDE ETB receptor 5X93
TM4 174 4.42x42 μ receptor 6DDE μ receptor 6DDE
TM4 175 4.43x43 μ receptor 6DDE μ receptor 6DDE
TM4 176 4.44x44 μ receptor 6DDE US28 4XT1
TM4 177 4.45x45 μ receptor 6DDE - -
TM4 178 4.46x46 μ receptor 6DDE PAF receptor 5ZKQ
TM4 179 4.47x47 μ receptor 6DDE PAF receptor 5ZKQ
TM4 180 4.48x48 μ receptor 6DDE PAF receptor 5ZKQ
TM4 181 4.49x49 μ receptor 6DDE PAF receptor 5ZKQ
TM4 182 4.50x50 μ receptor 6DDE μ receptor 6DDE
TM4 183 4.51x51 μ receptor 6DDE C5a1 receptor 5O9H
TM4 184 4.52x52 μ receptor 6DDE - -
TM4 185 4.53x53 μ receptor 6DDE - -
TM4 186 4.54x54 μ receptor 6DDE PAR2 5NDD
TM4 187 4.55x55 μ receptor 6DDE PAR2 5NDD
TM4 188 4.56x56 μ receptor 6DDE P2Y12 receptor 4NTJ
TM4 189 4.57x57 AT2 receptor 5UNG P2Y12 receptor 4NTJ
TM4 190 4.58x59 AT2 receptor 5UNG κ receptor 4DJH
TM4 191 4.59x60 μ receptor 6DDE PAR2 5NDD
TM4 192 4.60x61 μ receptor 6DDE P2Y12 receptor 4NTJ
TM4 193 4.61x62 μ receptor 6DDE PAR1 3VW7
TM4 194 4.62x63 AT2 receptor 5UNG PAR2 5NDD
TM4 195 4.63x64 AT2 receptor 5UNG AT2 receptor 5UNG
TM4 196 4.64x65 AT2 receptor 5UNG AT2 receptor 5UNG
ECL2 197 - - - -
ECL2 198 ETB receptor 5X93 - -
ECL2 199 ETB receptor 5X93 - -
ECL2 200 ETB receptor 5X93 - -
ECL2 201 ETB receptor 5X93 - -
ECL2 202 ETB receptor 5X93 - -
ECL2 203 ETB receptor 5X93 - -
ECL2 204 ETB receptor 5X93 - -
ECL2 205 ETB receptor 5X93 ETB receptor 5X93
ECL2 206 ETB receptor 5X93 - -
ECL2 207 ETB receptor 5X93 - -
ECL2 208 ETB receptor 5X93 - -
ECL2 209 ETB receptor 5X93 - -
ECL2 210 - - - -
ECL2 211 45.50x50 μ receptor 6DDE μ receptor 6DDE
ECL2 212 45.51x51 μ receptor 6DDE 5-HT2B receptor 4IB4
ECL2 213 45.52x52 μ receptor 6DDE Rhodopsin 5DYS
ECL2 214 - - - -
ECL2 215 - - - -
TM5 216 5.30x31 AT2 receptor 5UNG - -
TM5 217 5.31x32 AT2 receptor 5UNG δ receptor 4N6H
TM5 218 5.32x33 AT2 receptor 5UNG P2Y1 receptor 4XNW
TM5 219 5.33x34 μ receptor 6DDE OX2 receptor 5WS3
TM5 220 5.34x35 μ receptor 6DDE μ receptor 6DDE
TM5 221 5.35x36 μ receptor 6DDE μ receptor 6DDE
TM5 222 5.36x37 μ receptor 6DDE CXCR4 3ODU
TM5 223 5.37x38 μ receptor 6DDE CCR2 5T1A
TM5 224 5.38x39 μ receptor 6DDE δ receptor 4N6H
TM5 225 5.39x40 μ receptor 6DDE P2Y12 receptor 4NTJ
TM5 226 5.40x41 μ receptor 6DDE P2Y1 receptor 4XNW
TM5 227 5.41x42 μ receptor 6DDE Y1 receptor 5ZBH
TM5 228 5.42x43 μ receptor 6DDE PAR2 5NDD
TM5 229 5.43x44 μ receptor 6DDE AT2 receptor 5UNG
TM5 230 5.44x45 μ receptor 6DDE P2Y1 receptor 4XNW
TM5 231 5.45x46 μ receptor 6DDE CXCR4 3ODU
TM5 232 5.46x461 μ receptor 6DDE AT2 receptor 5UNG
TM5 233 5.47x47 μ receptor 6DDE μ receptor 6DDE
TM5 234 5.48x48 μ receptor 6DDE PAR2 5NDD
TM5 235 5.49x49 μ receptor 6DDE PAF receptor 5ZKQ
TM5 236 5.50x50 μ receptor 6DDE μ receptor 6DDE
TM5 237 5.51x51 μ receptor 6DDE P2Y1 receptor 4XNW
TM5 238 5.52x52 μ receptor 6DDE US28 4XT1
TM5 239 5.53x53 μ receptor 6DDE NTS1 receptor 4XES
TM5 240 5.54x54 μ receptor 6DDE μ receptor 6DDE
TM5 241 5.55x55 μ receptor 6DDE μ receptor 6DDE
TM5 242 5.56x56 μ receptor 6DDE PAF receptor 5ZKQ
TM5 243 5.57x57 μ receptor 6DDE μ receptor 6DDE
TM5 244 5.58x58 μ receptor 6DDE - -
TM5 245 5.59x59 μ receptor 6DDE CB1 receptor 5XRA
TM5 246 5.60x60 μ receptor 6DDE OX2 receptor 5WS3
TM5 247 5.61x61 μ receptor 6DDE PAF receptor 5ZKQ
TM5 248 5.62x62 μ receptor 6DDE - -
TM5 249 5.63x63 μ receptor 6DDE apelin receptor 5VBL
TM5 250 5.64x64 μ receptor 6DDE 5-HT2C receptor 6BQH
TM5 251 5.65x65 μ receptor 6DDE μ receptor 6DDE
TM5 252 5.66x66 μ receptor 6DDE 5-HT1B receptor 4IAR
TM5 253 5.67x67 μ receptor 6DDE - -
TM5 254 5.68x68 μ receptor 6DDE - -
ICL3 255 - - - -
ICL3 256 - - - -
ICL3 257 - - - -
ICL3 258 - - - -
TM6 259 6.24x24 μ receptor 6DDE - -
TM6 260 6.25x25 μ receptor 6DDE AT2 receptor 5UNG
TM6 261 6.26x26 μ receptor 6DDE - -
TM6 262 6.27x27 μ receptor 6DDE 5-HT2B receptor 4IB4
TM6 263 6.28x28 μ receptor 6DDE A2A receptor 4UHR
TM6 264 6.29x29 μ receptor 6DDE AT2 receptor 5UNG
TM6 265 6.30x30 μ receptor 6DDE 5-HT2B receptor 4IB4
TM6 266 6.31x31 μ receptor 6DDE μ receptor 6DDE
TM6 267 6.32x32 μ receptor 6DDE μ receptor 6DDE
TM6 268 6.33x33 μ receptor 6DDE 5-HT2B receptor 4IB4
TM6 269 6.34x34 μ receptor 6DDE μ receptor 6DDE
TM6 270 6.35x35 μ receptor 6DDE - -
TM6 271 6.36x36 μ receptor 6DDE CCR5 5UIW
TM6 272 6.37x37 μ receptor 6DDE μ receptor 6DDE
TM6 273 6.38x38 μ receptor 6DDE μ receptor 6DDE
TM6 274 6.39x39 μ receptor 6DDE μ receptor 6DDE
TM6 275 6.40x40 μ receptor 6DDE μ receptor 6DDE
TM6 276 6.41x41 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM6 277 6.42x42 μ receptor 6DDE PAF receptor 5ZKQ
TM6 278 6.43x43 μ receptor 6DDE 5-HT2B receptor 4IB4
TM6 279 6.44x44 μ receptor 6DDE μ receptor 6DDE
TM6 280 6.45x45 μ receptor 6DDE μ receptor 6DDE
TM6 281 6.46x46 μ receptor 6DDE PAF receptor 5ZKQ
TM6 282 6.47x47 μ receptor 6DDE PAF receptor 5ZKQ
TM6 283 6.48x48 μ receptor 6DDE μ receptor 6DDE
TM6 284 6.49x49 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM6 285 6.50x50 μ receptor 6DDE μ receptor 6DDE
TM6 286 6.51x51 μ receptor 6DDE P2Y1 receptor 4XNW
TM6 287 6.52x52 μ receptor 6DDE AT1 receptor 4ZUD
TM6 288 6.53x53 μ receptor 6DDE μ receptor 6DDE
TM6 289 6.54x54 μ receptor 6DDE FFA1 receptor 5TZY
TM6 290 6.55x55 μ receptor 6DDE AT2 receptor 5UNG
TM6 291 6.56x56 μ receptor 6DDE AT2 receptor 5UNG
TM6 292 6.57x57 μ receptor 6DDE AT2 receptor 5UNG
TM6 293 6.58x58 μ receptor 6DDE AT2 receptor 5UNG
TM6 294 6.59x59 μ receptor 6DDE PAF receptor 5ZKQ
TM6 295 6.60x60 μ receptor 6DDE PAF receptor 5ZKQ
TM6 296 6.61x61 μ receptor 6DDE Rhodopsin 5DYS
TM6 297 6.62x62 AT2 receptor 5UNG P2Y1 receptor 4XNW
TM6 298 6.63x63 AT2 receptor 5UNG PAF receptor 5ZKQ
TM6 299 6.64x64 AT2 receptor 5UNG AT2 receptor 5UNG
ECL3 300 - - - -
ECL3 301 AT2 receptor 5UNG - -
ECL3 302 - - - -
TM7 303 7.24x23 AT2 receptor 5UNG AT2 receptor 5UNG
TM7 304 7.25x24 AT2 receptor 5UNG AT2 receptor 5UNG
TM7 305 7.26x25 AT2 receptor 5UNG - -
TM7 306 7.27x26 AT2 receptor 5UNG - -
TM7 307 7.28x27 AT2 receptor 5UNG P2Y12 receptor 4NTJ
TM7 308 7.29x28 AT2 receptor 5UNG US28 4XT1
TM7 309 7.30x29 μ receptor 6DDE AT1 receptor 4ZUD
TM7 310 7.31x30 μ receptor 6DDE PAF receptor 5ZKQ
TM7 311 7.32x31 μ receptor 6DDE AT2 receptor 5UNG
TM7 312 7.33x32 μ receptor 6DDE μ receptor 6DDE
TM7 313 7.34x33 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM7 314 7.35x34 μ receptor 6DDE CCR2 5T1A
TM7 315 7.36x35 μ receptor 6DDE PAF receptor 5ZKQ
TM7 316 7.37x36 μ receptor 6DDE 5-HT2B receptor 4IB4
TM7 317 7.38x37 μ receptor 6DDE PAR2 5NDD
TM7 318 7.39x38 μ receptor 6DDE CB1 receptor 5XRA
TM7 319 7.40x39 μ receptor 6DDE Rhodopsin 5DYS
TM7 320 7.41x40 μ receptor 6DDE ETB receptor 5X93
TM7 321 7.42x41 μ receptor 6DDE P2Y1 receptor 4XNW
TM7 322 7.43x42 μ receptor 6DDE μ receptor 6DDE
TM7 323 7.44x43 μ receptor 6DDE LPA6 receptor 5XSZ
TM7 324 7.45x45 μ receptor 6DDE μ receptor 6DDE
TM7 325 7.46x46 μ receptor 6DDE μ receptor 6DDE
TM7 326 7.47x47 μ receptor 6DDE μ receptor 6DDE
TM7 327 7.48x48 μ receptor 6DDE μ receptor 6DDE
TM7 328 7.49x49 μ receptor 6DDE μ receptor 6DDE
TM7 329 7.50x50 μ receptor 6DDE μ receptor 6DDE
TM7 330 7.51x51 μ receptor 6DDE PAR1 3VW7
TM7 331 7.52x52 μ receptor 6DDE PAR2 5NDD
TM7 332 7.53x53 μ receptor 6DDE μ receptor 6DDE
TM7 333 7.54x54 μ receptor 6DDE US28 4XT1
TM7 334 7.55x55 AT2 receptor 5UNG - -
TM7 335 7.56x56 AT2 receptor 5UNG AT2 receptor 5UNG
H8 336 8.47x47 CCR2 5T1A CCR2 5T1A
H8 337 8.48x48 CCR2 5T1A 5-HT2B receptor 5TVN
H8 338 8.49x49 CCR2 5T1A AT2 receptor 5UNG
H8 339 8.50x50 CCR2 5T1A PAR2 5NDD
H8 340 8.51x51 CCR2 5T1A PAR2 5NDD
H8 341 8.52x52 CCR2 5T1A H1 receptor 3RZE
H8 342 8.53x53 CCR2 5T1A CCR2 5T1A
H8 343 8.54x54 CCR2 5T1A - -
H8 344 8.55x55 CCR2 5T1A - -
H8 345 8.56x56 CCR2 5T1A β2-adrenoceptor 3SN6
H8 346 8.57x57 CCR2 5T1A AT2 receptor 5UNG
H8 347 8.58x58 CCR2 5T1A - -
H8 348 8.59x59 US28 4XT1 CCR5 5UIW
H8 349 8.60x60 US28 4XT1 - -
H8 350 8.61x61 US28 4XT1 - -
C-term 351 - - - -
C-term 352 - - - -
C-term 353 - - - -
C-term 354 - - - -
C-term 355 - - - -