BB3 receptor homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Intermediate (Δ distance (Å): 7.29 docs)

VERSION

2018-07-10

MAIN TEMPLATE

μ receptor (sequence similarity: 47%) PDB: 6DDE

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 68.5 18.7 12.8
Side-chains 19.6 53.6 26.8

Number of backbone templates: 7
Number of rotamer templates: 38

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5X93
6DDE
4DJH
6B73
3VW7
3SN6
4UHR
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 32 ETB receptor 5X93 ETB receptor 5X93
N-term 33 ETB receptor 5X93 ETB receptor 5X93
N-term 34 ETB receptor 5X93 ETB receptor 5X93
N-term 35 ETB receptor 5X93 ETB receptor 5X93
N-term 36 ETB receptor 5X93 ETB receptor 5X93
TM1 37 1.22x22 ETB receptor 5X93 - -
TM1 38 1.23x23 ETB receptor 5X93 ETB receptor 5X93
TM1 39 1.24x24 ETB receptor 5X93 - -
TM1 40 1.25x25 ETB receptor 5X93 - -
TM1 41 1.26x26 ETB receptor 5X93 - -
TM1 42 1.27x27 ETB receptor 5X93 - -
TM1 43 1.28x28 ETB receptor 5X93 - -
TM1 44 1.29x29 ETB receptor 5X93 NTS1 receptor 4XES
TM1 45 1.30x30 ETB receptor 5X93 - -
TM1 46 1.31x31 μ receptor 6DDE CCR5 5UIW
TM1 47 1.32x32 μ receptor 6DDE - -
TM1 48 1.33x33 μ receptor 6DDE - -
TM1 49 1.34x34 μ receptor 6DDE δ receptor 4N6H
TM1 50 1.35x35 μ receptor 6DDE κ receptor 4DJH
TM1 51 1.36x36 μ receptor 6DDE - -
TM1 52 1.37x37 μ receptor 6DDE PAR2 5NDD
TM1 53 1.38x38 μ receptor 6DDE M1 receptor 5CXV
TM1 54 1.39x39 μ receptor 6DDE μ receptor 6DDE
TM1 55 1.40x40 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM1 56 1.41x41 μ receptor 6DDE P2Y12 receptor 4NTJ
TM1 57 1.42x42 μ receptor 6DDE A2A receptor 4UHR
TM1 58 1.43x43 μ receptor 6DDE 5-HT2B receptor 4IB4
TM1 59 1.44x44 μ receptor 6DDE - -
TM1 60 1.45x45 μ receptor 6DDE μ receptor 6DDE
TM1 61 1.46x46 μ receptor 6DDE μ receptor 6DDE
TM1 62 1.47x47 μ receptor 6DDE A2A receptor 4UHR
TM1 63 1.48x48 μ receptor 6DDE A2A receptor 4UHR
TM1 64 1.49x49 μ receptor 6DDE μ receptor 6DDE
TM1 65 1.50x50 μ receptor 6DDE μ receptor 6DDE
TM1 66 1.51x51 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM1 67 1.52x52 μ receptor 6DDE - -
TM1 68 1.53x53 μ receptor 6DDE ETB receptor 5X93
TM1 69 1.54x54 μ receptor 6DDE PAR1 3VW7
TM1 70 1.55x55 μ receptor 6DDE - -
TM1 71 1.56x56 μ receptor 6DDE μ receptor 6DDE
TM1 72 1.57x57 μ receptor 6DDE PAR2 5NDD
TM1 73 1.58x58 μ receptor 6DDE P2Y12 receptor 4NTJ
TM1 74 1.59x59 μ receptor 6DDE ETB receptor 5X93
TM1 75 1.60x60 μ receptor 6DDE - -
ICL1 76 12.48x48 - - - -
ICL1 77 12.49x49 κ receptor 4DJH CB1 receptor 5TGZ
ICL1 78 12.50x50 κ receptor 4DJH κ receptor 4DJH
ICL1 79 12.51x51 - - - -
TM2 80 2.37x37 κ receptor 4DJH κ receptor 4DJH
TM2 81 2.38x38 μ receptor 6DDE A2A receptor 4UHR
TM2 82 2.39x39 μ receptor 6DDE ETB receptor 5X93
TM2 83 2.40x40 μ receptor 6DDE A2A receptor 4UHR
TM2 84 2.41x41 μ receptor 6DDE μ receptor 6DDE
TM2 85 2.42x42 μ receptor 6DDE A2A receptor 4UHR
TM2 86 2.43x43 μ receptor 6DDE μ receptor 6DDE
TM2 87 2.44x44 μ receptor 6DDE β2-adrenoceptor 3SN6
TM2 88 2.45x45 μ receptor 6DDE NTS1 receptor 4XES
TM2 89 2.46x46 μ receptor 6DDE μ receptor 6DDE
TM2 90 2.47x47 μ receptor 6DDE μ receptor 6DDE
TM2 91 2.48x48 μ receptor 6DDE Y1 receptor 5ZBH
TM2 92 2.49x49 μ receptor 6DDE ETB receptor 5X93
TM2 93 2.50x50 μ receptor 6DDE μ receptor 6DDE
TM2 94 2.51x51 μ receptor 6DDE PAR2 5NDD
TM2 95 2.52x52 μ receptor 6DDE μ receptor 6DDE
TM2 96 2.53x53 μ receptor 6DDE FFA1 receptor 5TZY
TM2 97 2.54x54 μ receptor 6DDE NTS1 receptor 4XES
TM2 98 2.55x55 ETB receptor 5X93 NTS1 receptor 4XES
TM2 99 2.56x551 ETB receptor 5X93 OX2 receptor 5WS3
TM2 100 2.57x56 ETB receptor 5X93 OX2 receptor 5WS3
TM2 101 2.58x57 μ receptor 6DDE CCR5 5UIW
TM2 102 2.59x58 μ receptor 6DDE μ receptor 6DDE
TM2 103 2.60x59 μ receptor 6DDE NTS1 receptor 4XES
TM2 104 2.61x60 μ receptor 6DDE - -
TM2 105 2.62x61 μ receptor 6DDE FFA1 receptor 5TZY
TM2 106 2.63x62 μ receptor 6DDE A2A receptor 3QAK
TM2 107 2.64x63 μ receptor 6DDE β2-adrenoceptor 3SN6
TM2 108 2.65x64 μ receptor 6DDE μ receptor 6DDE
TM2 109 2.66x65 μ receptor 6DDE FFA1 receptor 5TZY
TM2 110 2.67x66 μ receptor 6DDE FFA1 receptor 5TZY
ECL1 111 - - - -
ECL1 112 23.49x49 ETB receptor 5X93 - -
ECL1 113 23.50x50 ETB receptor 5X93 ETB receptor 5X93
ECL1 114 23.51x51 ETB receptor 5X93 OX1 receptor 4ZJ8
ECL1 115 23.52x52 - - - -
TM3 116 3.21x21 μ receptor 6DDE μ receptor 6DDE
TM3 117 3.22x22 μ receptor 6DDE H1 receptor 3RZE
TM3 118 3.23x23 μ receptor 6DDE μ receptor 5C1M
TM3 119 3.24x24 μ receptor 6DDE NTS1 receptor 4XES
TM3 120 3.25x25 μ receptor 6DDE μ receptor 6DDE
TM3 121 3.26x26 μ receptor 6DDE μ receptor 6DDE
TM3 122 3.27x27 μ receptor 6DDE PAR2 5NDD
TM3 123 3.28x28 μ receptor 6DDE PAR2 5NDD
TM3 124 3.29x29 μ receptor 6DDE P2Y12 receptor 4NTJ
TM3 125 3.30x30 μ receptor 6DDE NTS1 receptor 4XES
TM3 126 3.31x31 μ receptor 6DDE μ receptor 6DDE
TM3 127 3.32x32 μ receptor 6DDE NTS1 receptor 4XES
TM3 128 3.33x33 μ receptor 6DDE A2A receptor 4UHR
TM3 129 3.34x34 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM3 130 3.35x35 μ receptor 6DDE ETB receptor 5X93
TM3 131 3.36x36 μ receptor 6DDE ETB receptor 5X93
TM3 132 3.37x37 μ receptor 6DDE ETB receptor 5X93
TM3 133 3.38x38 μ receptor 6DDE OX2 receptor 5WS3
TM3 134 3.39x39 μ receptor 6DDE μ receptor 6DDE
TM3 135 3.40x40 μ receptor 6DDE PAF receptor 5ZKQ
TM3 136 3.41x41 μ receptor 6DDE μ receptor 6DDE
TM3 137 3.42x42 μ receptor 6DDE μ receptor 6DDE
TM3 138 3.43x43 μ receptor 6DDE μ receptor 6DDE
TM3 139 3.44x44 μ receptor 6DDE PAR2 5NDD
TM3 140 3.45x45 μ receptor 6DDE H1 receptor 3RZE
TM3 141 3.46x46 μ receptor 6DDE PAR2 5NDD
TM3 142 3.47x47 μ receptor 6DDE μ receptor 6DDE
TM3 143 3.48x48 μ receptor 6DDE P2Y1 receptor 4XNW
TM3 144 3.49x49 μ receptor 6DDE μ receptor 6DDE
TM3 145 3.50x50 μ receptor 6DDE μ receptor 6DDE
TM3 146 3.51x51 μ receptor 6DDE μ receptor 6DDE
TM3 147 3.52x52 μ receptor 6DDE - -
TM3 148 3.53x53 μ receptor 6DDE μ receptor 6DDE
TM3 149 3.54x54 μ receptor 6DDE μ receptor 6DDE
TM3 150 3.55x55 μ receptor 6DDE PAR2 5NDD
TM3 151 3.56x56 μ receptor 6DDE 5-HT2B receptor 4IB4
ICL2 152 34.50x50 - - - -
ICL2 153 34.51x51 κ receptor 6B73 A2A receptor 4UHR
ICL2 154 34.52x52 κ receptor 6B73 5-HT1B receptor 4IAQ
ICL2 155 34.53x53 κ receptor 6B73 - -
ICL2 156 34.54x54 κ receptor 6B73 FFA1 receptor 5TZY
ICL2 157 34.55x55 κ receptor 6B73 - -
ICL2 158 34.56x56 κ receptor 6B73 - -
ICL2 159 34.57x57 - - - -
TM4 160 4.38x38 μ receptor 6DDE - -
TM4 161 4.39x39 μ receptor 6DDE - -
TM4 162 4.40x40 μ receptor 6DDE P2Y12 receptor 4PXZ
TM4 163 4.41x41 μ receptor 6DDE κ receptor 4DJH
TM4 164 4.42x42 μ receptor 6DDE NTS1 receptor 4XES
TM4 165 4.43x43 μ receptor 6DDE US28 4XT1
TM4 166 4.44x44 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM4 167 4.45x45 μ receptor 6DDE 5-HT2B receptor 4IB4
TM4 168 4.46x46 μ receptor 6DDE - -
TM4 169 4.47x47 μ receptor 6DDE M3 receptor 4U15
TM4 170 4.48x48 μ receptor 6DDE μ receptor 6DDE
TM4 171 4.49x49 μ receptor 6DDE 5-HT2B receptor 4IB4
TM4 172 4.50x50 μ receptor 6DDE μ receptor 6DDE
TM4 173 4.51x51 μ receptor 6DDE μ receptor 6DDE
TM4 174 4.52x52 μ receptor 6DDE ETB receptor 5X93
TM4 175 4.53x53 μ receptor 6DDE μ receptor 6DDE
TM4 176 4.54x54 μ receptor 6DDE - -
TM4 177 4.55x55 μ receptor 6DDE OX2 receptor 5WS3
TM4 178 4.56x56 μ receptor 6DDE - -
TM4 179 4.57x57 ETB receptor 5X93 NTS1 receptor 4XES
TM4 180 4.58x59 ETB receptor 5X93 FFA1 receptor 5TZY
TM4 181 4.59x60 μ receptor 6DDE PAR2 5NDD
TM4 182 4.60x61 μ receptor 6DDE ETB receptor 5X93
TM4 183 4.61x62 μ receptor 6DDE ETB receptor 5X93
TM4 184 4.62x63 ETB receptor 5X93 ETB receptor 5X93
TM4 185 4.63x64 ETB receptor 5X93 CCR5 5UIW
TM4 186 4.64x65 ETB receptor 5X93 - -
ECL2 187 - - - -
ECL2 188 - - - -
ECL2 189 - - - -
ECL2 190 - - - -
ECL2 191 - - - -
ECL2 192 - - - -
ECL2 193 - - - -
ECL2 194 - - - -
ECL2 195 - - - -
ECL2 196 - - - -
ECL2 197 - - - -
ECL2 198 - - - -
ECL2 199 - - - -
ECL2 200 - - - -
ECL2 201 - - - -
ECL2 202 - - - -
ECL2 203 45.50x50 μ receptor 6DDE μ receptor 6DDE
ECL2 204 45.51x51 μ receptor 6DDE μ receptor 6DDE
ECL2 205 45.52x52 μ receptor 6DDE CCR5 5UIW
ECL2 206 - - - -
TM5 207 5.28x28 - - - -
TM5 208 5.29x29 - - - -
TM5 209 5.30x30 - - - -
TM5 210 5.31x31 - - - -
TM5 211 5.32x32 - - - -
TM5 212 5.33x33 - - - -
TM5 213 5.34x34 μ receptor 6DDE OX1 receptor 4ZJ8
TM5 214 5.35x35 μ receptor 6DDE - -
TM5 215 5.36x36 μ receptor 6DDE μ receptor 6DDE
TM5 216 5.37x37 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM5 217 5.38x38 μ receptor 6DDE S1P1 receptor 3V2Y
TM5 218 5.39x39 μ receptor 6DDE - -
TM5 219 5.40x40 μ receptor 6DDE CB1 receptor 5XRA
TM5 220 5.41x41 μ receptor 6DDE PAR2 5NDD
TM5 221 5.42x42 μ receptor 6DDE μ receptor 6DDE
TM5 222 5.43x43 μ receptor 6DDE OX2 receptor 5WS3
TM5 223 5.44x44 μ receptor 6DDE Y1 receptor 5ZBH
TM5 224 5.45x45 μ receptor 6DDE PAR1 3VW7
TM5 225 5.46x46 PAR1 3VW7 PAR1 3VW7
TM5 226 5.47x47 PAR1 3VW7 OX2 receptor 5WS3
TM5 227 5.48x48 μ receptor 6DDE μ receptor 6DDE
TM5 228 5.49x49 μ receptor 6DDE P2Y12 receptor 4NTJ
TM5 229 5.50x50 μ receptor 6DDE μ receptor 6DDE
TM5 230 5.51x51 μ receptor 6DDE PAR1 3VW7
TM5 231 5.52x52 μ receptor 6DDE US28 4XT1
TM5 232 5.53x53 μ receptor 6DDE μ receptor 6DDE
TM5 233 5.54x54 μ receptor 6DDE μ receptor 6DDE
TM5 234 5.55x55 μ receptor 6DDE NTS1 receptor 4XES
TM5 235 5.56x56 μ receptor 6DDE μ receptor 6DDE
TM5 236 5.57x57 μ receptor 6DDE - -
TM5 237 5.58x58 μ receptor 6DDE μ receptor 6DDE
TM5 238 5.59x59 μ receptor 6DDE CCR5 5UIW
TM5 239 5.60x60 μ receptor 6DDE μ receptor 6DDE
TM5 240 5.61x61 μ receptor 6DDE NTS1 receptor 4XES
TM5 241 5.62x62 μ receptor 6DDE NTS1 receptor 4XES
TM5 242 5.63x63 μ receptor 6DDE PAR2 5NDD
TM5 243 5.64x64 μ receptor 6DDE PAF receptor 5ZKQ
TM5 244 5.65x65 μ receptor 6DDE μ receptor 6DDE
TM5 245 5.66x66 μ receptor 6DDE P2Y12 receptor 4NTJ
TM5 246 5.67x67 μ receptor 6DDE 5-HT2B receptor 4IB4
TM5 247 5.68x68 μ receptor 6DDE PAR1 3VW7
TM5 248 5.69x69 β2-adrenoceptor 3SN6 - -
TM5 249 5.70x70 β2-adrenoceptor 3SN6 - -
TM5 250 5.71x71 β2-adrenoceptor 3SN6 - -
TM5 251 5.72x72 β2-adrenoceptor 3SN6 β2-adrenoceptor 3SN6
TM5 252 5.73x73 β2-adrenoceptor 3SN6 - -
ICL3 253 μ receptor 6DDE - -
ICL3 254 μ receptor 6DDE - -
ICL3 255 μ receptor 6DDE - -
ICL3 256 μ receptor 6DDE - -
ICL3 257 μ receptor 6DDE - -
TM6 258 6.22x22 A2A receptor 4UHR - -
TM6 259 6.23x23 μ receptor 6DDE A2A receptor 3VG9
TM6 260 6.24x24 μ receptor 6DDE A2A receptor 4UHR
TM6 261 6.25x25 μ receptor 6DDE OX2 receptor 5WS3
TM6 262 6.26x26 μ receptor 6DDE OX2 receptor 5WS3
TM6 263 6.27x27 μ receptor 6DDE 5-HT2B receptor 4IB4
TM6 264 6.28x28 μ receptor 6DDE PAR2 5NDD
TM6 265 6.29x29 μ receptor 6DDE PAR1 3VW7
TM6 266 6.30x30 μ receptor 6DDE FFA1 receptor 5TZY
TM6 267 6.31x31 μ receptor 6DDE PAR1 3VW7
TM6 268 6.32x32 μ receptor 6DDE μ receptor 6DDE
TM6 269 6.33x33 μ receptor 6DDE μ receptor 6DDE
TM6 270 6.34x34 μ receptor 6DDE PAR2 5NDD
TM6 271 6.35x35 μ receptor 6DDE μ receptor 6DDE
TM6 272 6.36x36 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM6 273 6.37x37 μ receptor 6DDE μ receptor 6DDE
TM6 274 6.38x38 μ receptor 6DDE μ receptor 6DDE
TM6 275 6.39x39 μ receptor 6DDE μ receptor 6DDE
TM6 276 6.40x40 μ receptor 6DDE ETB receptor 5X93
TM6 277 6.41x41 μ receptor 6DDE μ receptor 6DDE
TM6 278 6.42x42 μ receptor 6DDE μ receptor 6DDE
TM6 279 6.43x43 μ receptor 6DDE A2A receptor 4UHR
TM6 280 6.44x44 μ receptor 6DDE μ receptor 6DDE
TM6 281 6.45x45 μ receptor 6DDE A2A receptor 4UHR
TM6 282 6.46x46 μ receptor 6DDE PAR2 5NDD
TM6 283 6.47x47 μ receptor 6DDE PAR2 5NDD
TM6 284 6.48x48 μ receptor 6DDE μ receptor 6DDE
TM6 285 6.49x49 μ receptor 6DDE NTS1 receptor 4XES
TM6 286 6.50x50 μ receptor 6DDE μ receptor 6DDE
TM6 287 6.51x51 μ receptor 6DDE - -
TM6 288 6.52x52 μ receptor 6DDE μ receptor 6DDE
TM6 289 6.53x53 μ receptor 6DDE PAR2 5NDD
TM6 290 6.54x54 μ receptor 6DDE PAR2 5NDD
TM6 291 6.55x55 μ receptor 6DDE - -
TM6 292 6.56x56 μ receptor 6DDE NTS1 receptor 4XES
TM6 293 6.57x57 μ receptor 6DDE Rhodopsin 5DYS
TM6 294 6.58x58 μ receptor 6DDE PAR2 5NDD
TM6 295 6.59x59 μ receptor 6DDE LPA6 receptor 5XSZ
TM6 296 6.60x60 μ receptor 6DDE PAR2 5NDD
TM6 297 6.61x61 μ receptor 6DDE - -
ECL3 298 - - - -
ECL3 299 - - - -
ECL3 300 - - - -
ECL3 301 - - - -
ECL3 302 - - - -
ECL3 303 - - - -
ECL3 304 - - - -
TM7 305 7.28x27 ETB receptor 5X93 CCR5 5UIW
TM7 306 7.29x28 ETB receptor 5X93 AT2 receptor 5UNG
TM7 307 7.30x29 μ receptor 6DDE - -
TM7 308 7.31x30 μ receptor 6DDE 5-HT1B receptor 5V54
TM7 309 7.32x31 μ receptor 6DDE P2Y12 receptor 4NTJ
TM7 310 7.33x32 μ receptor 6DDE CCR9 5LWE
TM7 311 7.34x33 μ receptor 6DDE NTS1 receptor 4XES
TM7 312 7.35x34 μ receptor 6DDE CCR2 5T1A
TM7 313 7.36x35 μ receptor 6DDE PAR2 5NDD
TM7 314 7.37x36 μ receptor 6DDE μ receptor 6DDE
TM7 315 7.38x37 μ receptor 6DDE OX2 receptor 5WS3
TM7 316 7.39x38 μ receptor 6DDE P2Y1 receptor 4XNW
TM7 317 7.40x39 μ receptor 6DDE A2A receptor 4UHR
TM7 318 7.41x40 μ receptor 6DDE μ receptor 6DDE
TM7 319 7.42x41 μ receptor 6DDE NTS1 receptor 4GRV
TM7 320 7.43x42 μ receptor 6DDE AT2 receptor 5UNG
TM7 321 7.44x43 μ receptor 6DDE LPA6 receptor 5XSZ
TM7 322 7.45x45 μ receptor 6DDE μ receptor 6DDE
TM7 323 7.46x46 μ receptor 6DDE μ receptor 6DDE
TM7 324 7.47x47 μ receptor 6DDE μ receptor 6DDE
TM7 325 7.48x48 μ receptor 6DDE A2A receptor 4UHR
TM7 326 7.49x49 μ receptor 6DDE μ receptor 6DDE
TM7 327 7.50x50 μ receptor 6DDE μ receptor 6DDE
TM7 328 7.51x51 μ receptor 6DDE PAR2 5NDD
TM7 329 7.52x52 μ receptor 6DDE ETB receptor 5X93
TM7 330 7.53x53 μ receptor 6DDE ETB receptor 5X93
TM7 331 7.54x54 μ receptor 6DDE PAR2 5NDD
TM7 332 7.55x55 ETB receptor 5X93 - -
TM7 333 7.56x56 ETB receptor 5X93 PAF receptor 5ZKQ
H8 334 8.47x47 ETB receptor 5X93 PAR2 5NDD
H8 335 8.48x48 ETB receptor 5X93 5-HT2B receptor 5TVN
H8 336 8.49x49 ETB receptor 5X93 P2Y12 receptor 4NTJ
H8 337 8.50x50 ETB receptor 5X93 PAR2 5NDD
H8 338 8.51x51 ETB receptor 5X93 Y1 receptor 5ZBH
H8 339 8.52x52 ETB receptor 5X93 H1 receptor 3RZE
H8 340 8.53x53 ETB receptor 5X93 PAR2 5NDD
H8 341 8.54x54 ETB receptor 5X93 A2A receptor 4UHR
H8 342 8.55x55 ETB receptor 5X93 PAR2 5NDD
H8 343 8.56x56 ETB receptor 5X93 OX2 receptor 5WS3
H8 344 8.57x57 ETB receptor 5X93 - -
H8 345 8.58x58 ETB receptor 5X93 PAR2 5NDD
H8 346 8.59x59 ETB receptor 5X93 κ receptor 4DJH
H8 347 8.60x60 ETB receptor 5X93 ETB receptor 5X93
C-term 348 - - - -
C-term 349 - - - -
C-term 350 - - - -
C-term 351 - - - -
C-term 352 - - - -