C5a2 receptor homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Active (Δ distance (Å): 6.01 docs)

VERSION

2018-07-10

MAIN TEMPLATE

AT2 receptor (sequence similarity: 42%) PDB: 5UNG

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 78.8 13.4 7.8
Side-chains 20.5 56.5 23.0

Number of backbone templates: 3
Number of rotamer templates: 42

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5O9H
5UNG
5LWE
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 27 - - - -
N-term 28 - - - -
N-term 29 - - - -
N-term 30 - - - -
N-term 31 - - - -
TM1 32 1.29x29 C5a1 receptor 5O9H - -
TM1 33 1.30x30 C5a1 receptor 5O9H 5-HT1B receptor 6G79
TM1 34 1.31x31 C5a1 receptor 5O9H δ receptor 4N6H
TM1 35 1.32x32 C5a1 receptor 5O9H - -
TM1 36 1.33x33 AT2 receptor 5UNG - -
TM1 37 1.34x34 AT2 receptor 5UNG AT2 receptor 5UNG
TM1 38 1.35x35 AT2 receptor 5UNG - -
TM1 39 1.36x36 AT2 receptor 5UNG US28 4XT1
TM1 40 1.37x37 AT2 receptor 5UNG CCR9 5LWE
TM1 41 1.38x38 AT2 receptor 5UNG AT2 receptor 5UNG
TM1 42 1.39x39 AT2 receptor 5UNG AT2 receptor 5UNG
TM1 43 1.40x40 AT2 receptor 5UNG 5-HT1B receptor 6G79
TM1 44 1.41x41 AT2 receptor 5UNG NTS1 receptor 5T04
TM1 45 1.42x42 AT2 receptor 5UNG AT2 receptor 5UNG
TM1 46 1.43x43 AT2 receptor 5UNG AT2 receptor 5UNG
TM1 47 1.44x44 AT2 receptor 5UNG US28 4XT1
TM1 48 1.45x45 AT2 receptor 5UNG μ receptor 5C1M
TM1 49 1.46x46 AT2 receptor 5UNG AT2 receptor 5UNG
TM1 50 1.47x47 AT2 receptor 5UNG β2-adrenoceptor 3SN6
TM1 51 1.48x48 AT2 receptor 5UNG A1 receptor 6D9H
TM1 52 1.49x49 AT2 receptor 5UNG μ receptor 5C1M
TM1 53 1.50x50 AT2 receptor 5UNG AT2 receptor 5UNG
TM1 54 1.51x51 AT2 receptor 5UNG 5-HT1B receptor 6G79
TM1 55 1.52x52 AT2 receptor 5UNG PAR1 3VW7
TM1 56 1.53x53 AT2 receptor 5UNG AT2 receptor 5UNG
TM1 57 1.54x54 AT2 receptor 5UNG - -
TM1 58 1.55x55 AT2 receptor 5UNG PAF receptor 5ZKP
TM1 59 1.56x56 AT2 receptor 5UNG μ receptor 5C1M
TM1 60 1.57x57 AT2 receptor 5UNG FFA1 receptor 5TZY
TM1 61 1.58x58 AT2 receptor 5UNG CXCR4 3ODU
TM1 62 1.59x59 AT2 receptor 5UNG β2-adrenoceptor 3SN6
TM1 63 1.60x60 C5a1 receptor 5O9H - -
ICL1 64 - - - -
ICL1 65 C5a1 receptor 5O9H - -
ICL1 66 - - - -
TM2 67 2.37x37 C5a1 receptor 5O9H apelin receptor 5VBL
TM2 68 2.38x38 AT2 receptor 5UNG AT2 receptor 5UNG
TM2 69 2.39x39 AT2 receptor 5UNG US28 4XT1
TM2 70 2.40x40 AT2 receptor 5UNG C5a1 receptor 5O9H
TM2 71 2.41x41 AT2 receptor 5UNG LPA6 receptor 5XSZ
TM2 72 2.42x42 AT2 receptor 5UNG C5a1 receptor 5O9H
TM2 73 2.43x43 AT2 receptor 5UNG NTS1 receptor 5T04
TM2 74 2.44x44 AT2 receptor 5UNG Rhodopsin 4ZWJ
TM2 75 2.45x45 AT2 receptor 5UNG CXCR4 3ODU
TM2 76 2.46x46 AT2 receptor 5UNG AT2 receptor 5UNG
TM2 77 2.47x47 AT2 receptor 5UNG AT2 receptor 5UNG
TM2 78 2.48x48 AT2 receptor 5UNG AT2 receptor 5UNG
TM2 79 2.49x49 AT2 receptor 5UNG AT2 receptor 5UNG
TM2 80 2.50x50 AT2 receptor 5UNG AT2 receptor 5UNG
TM2 81 2.51x51 AT2 receptor 5UNG AT2 receptor 5UNG
TM2 82 2.52x52 AT2 receptor 5UNG AT2 receptor 5UNG
TM2 83 2.53x53 AT2 receptor 5UNG - -
TM2 84 2.54x54 AT2 receptor 5UNG C5a1 receptor 5O9H
TM2 85 2.55x55 AT2 receptor 5UNG LPA6 receptor 5XSZ
TM2 86 2.56x56 AT2 receptor 5UNG M2 receptor 4MQT
TM2 87 2.57x57 AT2 receptor 5UNG AT2 receptor 5UNG
TM2 88 2.58x58 AT2 receptor 5UNG AT2 receptor 5UNG
TM2 89 2.59x59 AT2 receptor 5UNG 5-HT2B receptor 5TUD
TM2 90 2.60x60 AT2 receptor 5UNG C5a1 receptor 5O9H
TM2 91 2.61x61 AT2 receptor 5UNG AT2 receptor 5UNG
TM2 92 2.62x62 AT2 receptor 5UNG μ receptor 5C1M
TM2 93 2.63x63 AT2 receptor 5UNG - -
TM2 94 2.64x64 AT2 receptor 5UNG β2-adrenoceptor 3SN6
TM2 95 2.65x65 AT2 receptor 5UNG AT1 receptor 4ZUD
TM2 96 2.66x66 AT2 receptor 5UNG apelin receptor 5VBL
TM2 97 2.67x67 C5a1 receptor 5O9H μ receptor 6DDF
ECL1 98 - - - -
ECL1 99 23.49x49 C5a1 receptor 5O9H C5a1 receptor 5O9H
ECL1 100 23.50x50 C5a1 receptor 5O9H C5a1 receptor 5O9H
ECL1 101 23.51x51 C5a1 receptor 5O9H C5a1 receptor 5O9H
ECL1 102 23.52x52 - - - -
TM3 103 3.21x21 AT2 receptor 5UNG AT2 receptor 5UNG
TM3 104 3.22x22 AT2 receptor 5UNG ETB receptor 5X93
TM3 105 3.23x23 AT2 receptor 5UNG AT2 receptor 5UNG
TM3 106 3.24x24 AT2 receptor 5UNG NTS1 receptor 5T04
TM3 107 3.25x25 AT2 receptor 5UNG AT2 receptor 5UNG
TM3 108 3.26x26 AT2 receptor 5UNG NTS1 receptor 5T04
TM3 109 3.27x27 AT2 receptor 5UNG 5-HT2B receptor 5TUD
TM3 110 3.28x28 AT2 receptor 5UNG US28 4XT1
TM3 111 3.29x29 AT2 receptor 5UNG C5a1 receptor 5O9H
TM3 112 3.30x30 AT2 receptor 5UNG AT2 receptor 5UNG
TM3 113 3.31x31 AT2 receptor 5UNG μ receptor 5C1M
TM3 114 3.32x32 AT2 receptor 5UNG C5a1 receptor 5O9H
TM3 115 3.33x33 AT2 receptor 5UNG A1 receptor 6D9H
TM3 116 3.34x34 AT2 receptor 5UNG AT2 receptor 5UNG
TM3 117 3.35x35 AT2 receptor 5UNG P2Y12 receptor 4NTJ
TM3 118 3.36x36 AT2 receptor 5UNG AT2 receptor 5UNG
TM3 119 3.37x37 AT2 receptor 5UNG LPA6 receptor 5XSZ
TM3 120 3.38x38 AT2 receptor 5UNG AT2 receptor 5UNG
TM3 121 3.39x39 AT2 receptor 5UNG AT2 receptor 5UNG
TM3 122 3.40x40 AT2 receptor 5UNG M2 receptor 4MQT
TM3 123 3.41x41 AT2 receptor 5UNG LPA6 receptor 5XSZ
TM3 124 3.42x42 AT2 receptor 5UNG C5a1 receptor 5O9H
TM3 125 3.43x43 AT2 receptor 5UNG μ receptor 5C1M
TM3 126 3.44x44 AT2 receptor 5UNG NTS1 receptor 5T04
TM3 127 3.45x45 AT2 receptor 5UNG 5-HT2B receptor 5TUD
TM3 128 3.46x46 AT2 receptor 5UNG NTS1 receptor 5T04
TM3 129 3.47x47 AT2 receptor 5UNG AT2 receptor 5UNG
TM3 130 3.48x48 AT2 receptor 5UNG C5a1 receptor 5O9H
TM3 131 3.49x49 AT2 receptor 5UNG AT2 receptor 5UNG
TM3 132 3.50x50 AT2 receptor 5UNG NTS1 receptor 4BUO
TM3 133 3.51x51 AT2 receptor 5UNG - -
TM3 134 3.52x52 AT2 receptor 5UNG M2 receptor 4MQT
TM3 135 3.53x53 AT2 receptor 5UNG C5a1 receptor 5O9H
TM3 136 3.54x54 AT2 receptor 5UNG FFA1 receptor 5TZY
TM3 137 3.55x55 AT2 receptor 5UNG - -
TM3 138 3.56x56 AT2 receptor 5UNG - -
ICL2 139 34.50x50 - - - -
ICL2 140 34.51x51 C5a1 receptor 5O9H C5a1 receptor 5O9H
ICL2 141 34.52x52 C5a1 receptor 5O9H C5a1 receptor 5O9H
ICL2 142 34.53x53 C5a1 receptor 5O9H - -
ICL2 143 34.54x54 C5a1 receptor 5O9H 5-HT1B receptor 4IAQ
ICL2 144 34.55x55 C5a1 receptor 5O9H NTS1 receptor 5T04
ICL2 145 34.56x56 C5a1 receptor 5O9H A1 receptor 6D9H
ICL2 146 34.57x57 - - - -
TM4 147 4.38x38 C5a1 receptor 5O9H FFA1 receptor 5TZY
TM4 148 4.39x39 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM4 149 4.40x40 C5a1 receptor 5O9H FFA1 receptor 5TZY
TM4 150 4.41x41 AT2 receptor 5UNG P2Y12 receptor 4NTJ
TM4 151 4.42x42 AT2 receptor 5UNG D2 receptor 6CM4
TM4 152 4.43x43 AT2 receptor 5UNG NOP receptor 5DHG
TM4 153 4.44x44 AT2 receptor 5UNG β2-adrenoceptor 3SN6
TM4 154 4.45x45 AT2 receptor 5UNG A1 receptor 6D9H
TM4 155 4.46x46 AT2 receptor 5UNG LPA6 receptor 5XSZ
TM4 156 4.47x47 AT2 receptor 5UNG M1 receptor 5CXV
TM4 157 4.48x48 AT2 receptor 5UNG LPA6 receptor 5XSZ
TM4 158 4.49x49 AT2 receptor 5UNG M2 receptor 4MQT
TM4 159 4.50x50 AT2 receptor 5UNG AT2 receptor 5UNG
TM4 160 4.51x51 AT2 receptor 5UNG CB1 receptor 5XRA
TM4 161 4.52x52 AT2 receptor 5UNG μ receptor 5C1M
TM4 162 4.53x53 AT2 receptor 5UNG AT2 receptor 5UNG
TM4 163 4.54x54 AT2 receptor 5UNG LPA6 receptor 5XSZ
TM4 164 4.55x55 AT2 receptor 5UNG AT2 receptor 5UNG
TM4 165 4.56x56 AT2 receptor 5UNG NTS1 receptor 5T04
TM4 166 4.57x57 AT2 receptor 5UNG C5a1 receptor 5O9H
TM4 167 4.58x59 AT2 receptor 5UNG 5-HT2C receptor 6BQG
TM4 168 4.59x60 AT2 receptor 5UNG AT2 receptor 5UNG
TM4 169 4.60x61 AT2 receptor 5UNG C5a1 receptor 5O9H
TM4 170 4.61x62 AT2 receptor 5UNG Rhodopsin 4ZWJ
TM4 171 4.62x63 AT2 receptor 5UNG 5-HT2B receptor 5TUD
TM4 172 4.63x64 AT2 receptor 5UNG C5a1 receptor 5O9H
TM4 173 4.64x65 AT2 receptor 5UNG AT2 receptor 5UNG
ECL2 174 AT2 receptor 5UNG - -
ECL2 175 AT2 receptor 5UNG - -
ECL2 176 AT2 receptor 5UNG - -
ECL2 177 AT2 receptor 5UNG - -
ECL2 178 AT2 receptor 5UNG - -
ECL2 179 AT2 receptor 5UNG - -
ECL2 180 AT2 receptor 5UNG - -
ECL2 181 AT2 receptor 5UNG - -
ECL2 182 AT2 receptor 5UNG - -
ECL2 183 AT2 receptor 5UNG - -
ECL2 184 AT2 receptor 5UNG - -
ECL2 185 AT2 receptor 5UNG - -
ECL2 186 45.50x50 AT2 receptor 5UNG AT2 receptor 5UNG
ECL2 187 45.51x51 AT2 receptor 5UNG 5-HT2B receptor 5TUD
ECL2 188 45.52x52 AT2 receptor 5UNG 5-HT1B receptor 6G79
ECL2 189 - - - -
ECL2 190 - - - -
ECL2 191 - - - -
ECL2 192 - - - -
TM5 193 5.31x32 AT2 receptor 5UNG δ receptor 4N6H
TM5 194 5.32x33 AT2 receptor 5UNG κ receptor 4DJH
TM5 195 5.33x34 AT2 receptor 5UNG LPA6 receptor 5XSZ
TM5 196 5.34x35 AT2 receptor 5UNG NTS1 receptor 5T04
TM5 197 5.35x36 AT2 receptor 5UNG μ receptor 5C1M
TM5 198 5.36x37 AT2 receptor 5UNG μ receptor 5C1M
TM5 199 5.37x38 AT2 receptor 5UNG M2 receptor 4MQT
TM5 200 5.38x39 AT2 receptor 5UNG LPA6 receptor 5XSZ
TM5 201 5.39x40 AT2 receptor 5UNG M2 receptor 4MQT
TM5 202 5.40x41 AT2 receptor 5UNG PAR1 3VW7
TM5 203 5.41x42 AT2 receptor 5UNG 5-HT2C receptor 6BQG
TM5 204 5.42x43 AT2 receptor 5UNG C5a1 receptor 5O9H
TM5 205 5.43x44 AT2 receptor 5UNG μ receptor 5C1M
TM5 206 5.44x45 AT2 receptor 5UNG US28 4XT1
TM5 207 5.45x46 AT2 receptor 5UNG μ receptor 5C1M
TM5 208 5.46x461 AT2 receptor 5UNG AT2 receptor 5UNG
TM5 209 5.47x47 AT2 receptor 5UNG AT2 receptor 5UNG
TM5 210 5.48x48 AT2 receptor 5UNG LPA6 receptor 5XSZ
TM5 211 5.49x49 AT2 receptor 5UNG Y1 receptor 5ZBH
TM5 212 5.50x50 AT2 receptor 5UNG AT2 receptor 5UNG
TM5 213 5.51x51 AT2 receptor 5UNG AT2 receptor 5UNG
TM5 214 5.52x52 AT2 receptor 5UNG β2-adrenoceptor 3SN6
TM5 215 5.53x53 AT2 receptor 5UNG - -
TM5 216 5.54x54 AT2 receptor 5UNG BLT1 receptor 5X33
TM5 217 5.55x55 AT2 receptor 5UNG AT2 receptor 5UNG
TM5 218 5.56x56 AT2 receptor 5UNG CXCR4 3ODU
TM5 219 5.57x57 AT2 receptor 5UNG AT2 receptor 5UNG
TM5 220 5.58x58 AT2 receptor 5UNG - -
TM5 221 5.59x59 AT2 receptor 5UNG β2-adrenoceptor 3SN6
TM5 222 5.60x60 AT2 receptor 5UNG D4 receptor 5WIV
TM5 223 5.61x61 AT2 receptor 5UNG Rhodopsin 4ZWJ
TM5 224 5.62x62 AT2 receptor 5UNG LPA6 receptor 5XSZ
TM5 225 5.63x63 AT2 receptor 5UNG ETB receptor 5X93
TM5 226 5.64x64 AT2 receptor 5UNG - -
ICL3 227 - - - -
ICL3 228 - - - -
TM6 229 6.31x31 AT2 receptor 5UNG μ receptor 5C1M
TM6 230 6.32x32 AT2 receptor 5UNG μ receptor 5C1M
TM6 231 6.33x33 AT2 receptor 5UNG - -
TM6 232 6.34x34 AT2 receptor 5UNG FFA1 receptor 5KW2
TM6 233 6.35x35 AT2 receptor 5UNG - -
TM6 234 6.36x36 AT2 receptor 5UNG κ receptor 6B73
TM6 235 6.37x37 AT2 receptor 5UNG - -
TM6 236 6.38x38 AT2 receptor 5UNG - -
TM6 237 6.39x39 AT2 receptor 5UNG AT2 receptor 5UNG
TM6 238 6.40x40 AT2 receptor 5UNG M2 receptor 4MQT
TM6 239 6.41x41 AT2 receptor 5UNG AT2 receptor 5UNG
TM6 240 6.42x42 AT2 receptor 5UNG CB1 receptor 5XRA
TM6 241 6.43x43 AT2 receptor 5UNG - -
TM6 242 6.44x44 AT2 receptor 5UNG AT2 receptor 5UNG
TM6 243 6.45x45 AT2 receptor 5UNG PAF receptor 5ZKP
TM6 244 6.46x46 AT2 receptor 5UNG μ receptor 5C1M
TM6 245 6.47x47 AT2 receptor 5UNG AT2 receptor 5UNG
TM6 246 6.48x48 AT2 receptor 5UNG AT2 receptor 5UNG
TM6 247 6.49x49 AT2 receptor 5UNG M2 receptor 4MQT
TM6 248 6.50x50 AT2 receptor 5UNG AT2 receptor 5UNG
TM6 249 6.51x51 AT2 receptor 5UNG LPA6 receptor 5XSZ
TM6 250 6.52x52 AT2 receptor 5UNG AT2 receptor 5UNG
TM6 251 6.53x53 AT2 receptor 5UNG US28 4XT1
TM6 252 6.54x54 AT2 receptor 5UNG AT2 receptor 5UNG
TM6 253 6.55x55 AT2 receptor 5UNG C5a1 receptor 5O9H
TM6 254 6.56x56 AT2 receptor 5UNG κ receptor 6B73
TM6 255 6.57x57 AT2 receptor 5UNG κ receptor 6B73
TM6 256 6.58x58 AT2 receptor 5UNG 5-HT2B receptor 5TUD
TM6 257 6.59x59 AT2 receptor 5UNG US28 4XT1
TM6 258 6.60x60 AT2 receptor 5UNG OX1 receptor 4ZJ8
TM6 259 6.61x61 AT2 receptor 5UNG AT2 receptor 5UNG
ECL3 260 AT2 receptor 5UNG - -
ECL3 261 AT2 receptor 5UNG - -
ECL3 262 AT2 receptor 5UNG AT2 receptor 5UNG
TM7 263 7.25x24 AT2 receptor 5UNG PAF receptor 5ZKP
TM7 264 7.26x25 AT2 receptor 5UNG LPA6 receptor 5XSZ
TM7 265 7.27x26 AT2 receptor 5UNG NTS1 receptor 5T04
TM7 266 7.28x27 AT2 receptor 5UNG ETB receptor 5X93
TM7 267 7.29x28 AT2 receptor 5UNG AT2 receptor 5UNG
TM7 268 7.30x29 AT2 receptor 5UNG CCR5 5UIW
TM7 269 7.31x30 AT2 receptor 5UNG κ receptor 6B73
TM7 270 7.32x31 AT2 receptor 5UNG κ receptor 6B73
TM7 271 7.33x32 AT2 receptor 5UNG US28 4XT1
TM7 272 7.34x33 AT2 receptor 5UNG AT2 receptor 5UNG
TM7 273 7.35x34 AT2 receptor 5UNG LPA1 receptor 4Z35
TM7 274 7.36x35 AT2 receptor 5UNG AT2 receptor 5UNG
TM7 275 7.37x36 AT2 receptor 5UNG NTS1 receptor 5T04
TM7 276 7.38x37 AT2 receptor 5UNG - -
TM7 277 7.39x38 AT2 receptor 5UNG 5-HT2B receptor 5TUD
TM7 278 7.40x39 AT2 receptor 5UNG P2Y1 receptor 4XNW
TM7 279 7.41x40 AT2 receptor 5UNG AT2 receptor 5UNG
TM7 280 7.42x41 AT2 receptor 5UNG LPA6 receptor 5XSZ
TM7 281 7.43x42 AT2 receptor 5UNG CB1 receptor 5XRA
TM7 282 7.44x43 AT2 receptor 5UNG NTS1 receptor 5T04
TM7 283 7.45x45 AT2 receptor 5UNG US28 4XT1
TM7 284 7.46x46 AT2 receptor 5UNG AT2 receptor 5UNG
TM7 285 7.47x47 AT2 receptor 5UNG AT2 receptor 5UNG
TM7 286 7.48x48 AT2 receptor 5UNG μ receptor 5C1M
TM7 287 7.49x49 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM7 288 7.50x50 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM7 289 7.51x51 C5a1 receptor 5O9H M1 receptor 5CXV
TM7 290 7.52x52 C5a1 receptor 5O9H AT2 receptor 5UNG
TM7 291 7.53x53 C5a1 receptor 5O9H - -
TM7 292 7.54x54 C5a1 receptor 5O9H - -
TM7 293 7.55x55 C5a1 receptor 5O9H A2A receptor 5G53
TM7 294 7.56x56 C5a1 receptor 5O9H 5-HT2C receptor 6BQG
H8 295 8.47x47 CCR9 5LWE US28 4XT1
H8 296 8.48x48 CCR9 5LWE A2A receptor 4UHR
H8 297 8.49x49 CCR9 5LWE M1 receptor 5CXV
H8 298 8.50x50 CCR9 5LWE - -
H8 299 8.51x51 CCR9 5LWE - -
H8 300 8.52x52 CCR9 5LWE 5-HT2C receptor 6BQG
H8 301 8.53x53 CCR9 5LWE - -
H8 302 8.54x54 CCR9 5LWE - -
H8 303 8.55x55 CCR9 5LWE A1 receptor 6D9H
H8 304 8.56x56 CCR9 5LWE - -
C-term 305 - - - -
C-term 306 - - - -
C-term 307 - - - -
C-term 308 - - - -
C-term 309 - - - -