CCR1 homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Inactive (Δ distance (Å): 1.02 docs)

VERSION

2018-07-10

MAIN TEMPLATE

CCR5 (sequence similarity: 78%) PDB: 5UIW

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 93.0 2.3 4.6
Side-chains 55.3 30.8 13.9

Number of backbone templates: 4
Number of rotamer templates: 29

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5UIW
4MBS
4ZUD
4DJH
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 21 CCR5 5UIW CCR5 5UIW
N-term 22 CCR5 5UIW CCR5 5UIW
N-term 23 CCR5 5UIW CCR5 5UIW
N-term 24 CCR5 5UIW CCR5 5UIW
N-term 25 CCR5 5UIW CCR5 5UIW
TM1 26 1.24x24 CCR5 5UIW - -
TM1 27 1.25x25 CCR5 5UIW - -
TM1 28 1.26x26 CCR5 5UIW CCR5 5UIW
TM1 29 1.27x27 CCR5 5UIW - -
TM1 30 1.28x28 CCR5 5UIW CCR9 5LWE
TM1 31 1.29x29 CCR5 5UIW - -
TM1 32 1.30x30 CCR5 5UIW CXCR4 3ODU
TM1 33 1.31x31 CCR5 5UIW CCR2 5T1A
TM1 34 1.32x32 CCR5 5UIW CCR5 5UIW
TM1 35 1.33x33 CCR5 5UIW CCR2 5T1A
TM1 36 1.34x34 CCR5 5UIW CCR5 5UIW
TM1 37 1.35x35 CCR5 5UIW CCR5 5UIW
TM1 38 1.36x36 CCR5 5UIW CCR5 5UIW
TM1 39 1.37x37 CCR5 5UIW CCR5 5UIW
TM1 40 1.38x38 CCR5 5UIW CCR5 5UIW
TM1 41 1.39x39 CCR5 5UIW CCR5 5UIW
TM1 42 1.40x40 CCR5 5UIW CCR5 5UIW
TM1 43 1.41x41 CCR5 5UIW CCR5 5UIW
TM1 44 1.42x42 CCR5 5UIW CCR5 5UIW
TM1 45 1.43x43 CCR5 5UIW CCR5 5UIW
TM1 46 1.44x44 CCR5 5UIW AT1 receptor 4ZUD
TM1 47 1.45x45 CCR5 5UIW AT2 receptor 5UNG
TM1 48 1.46x46 CCR5 5UIW CCR5 5UIW
TM1 49 1.47x47 CCR5 5UIW κ receptor 4DJH
TM1 50 1.48x48 CCR5 5UIW CCR5 5UIW
TM1 51 1.49x49 CCR5 5UIW CCR5 5UIW
TM1 52 1.50x50 CCR5 5UIW CCR5 5UIW
TM1 53 1.51x51 CCR5 5UIW 5-HT2C receptor 6BQH
TM1 54 1.52x52 CCR5 5UIW CCR5 5UIW
TM1 55 1.53x53 CCR5 5UIW CCR5 5UIW
TM1 56 1.54x54 CCR5 5UIW CCR2 5T1A
TM1 57 1.55x55 CCR5 5UIW CCR5 5UIW
TM1 58 1.56x56 CCR5 5UIW CXCR4 3ODU
TM1 59 1.57x57 CCR5 5UIW CCR5 5UIW
TM1 60 1.58x58 CCR5 5UIW μ receptor 4DKL
TM1 61 1.59x59 CCR5 5UIW Rhodopsin 1GZM
TM1 62 1.60x60 CCR5 5UIW CCR5 5UIW
ICL1 63 12.48x48 - - - -
ICL1 64 12.49x49 AT1 receptor 4ZUD β2-adrenoceptor 5JQH
ICL1 65 12.50x50 AT1 receptor 4ZUD AT1 receptor 4ZUD
ICL1 66 12.51x51 - - - -
TM2 67 2.37x37 CCR5 5UIW Y1 receptor 5ZBH
TM2 68 2.38x38 CCR5 5UIW CCR5 5UIW
TM2 69 2.39x39 CCR5 5UIW CCR5 5UIW
TM2 70 2.40x40 CCR5 5UIW AT1 receptor 4ZUD
TM2 71 2.41x41 CCR5 5UIW CCR5 5UIW
TM2 72 2.42x42 CCR5 5UIW CCR5 5UIW
TM2 73 2.43x43 CCR5 5UIW CCR5 5UIW
TM2 74 2.44x44 CCR5 5UIW CCR5 5UIW
TM2 75 2.45x45 CCR5 5UIW CCR5 5UIW
TM2 76 2.46x46 CCR5 5UIW CCR5 5UIW
TM2 77 2.47x47 CCR5 5UIW CCR5 5UIW
TM2 78 2.48x48 CCR5 5UIW CCR5 5UIW
TM2 79 2.49x49 CCR5 5UIW CCR5 5UIW
TM2 80 2.50x50 CCR5 5UIW CCR5 5UIW
TM2 81 2.51x51 CCR5 5UIW CCR5 5UIW
TM2 82 2.52x52 CCR5 5UIW CCR2 5T1A
TM2 83 2.53x53 CCR5 5UIW CCR5 5UIW
TM2 84 2.54x54 CCR5 5UIW CCR5 5UIW
TM2 85 2.55x55 CCR5 5UIW Rhodopsin 1GZM
TM2 86 2.56x56 CCR5 5UIW CCR5 5UIW
TM2 87 2.57x57 CCR5 5UIW CCR2 5T1A
TM2 88 2.58x58 CCR5 5UIW CCR5 5UIW
TM2 89 2.59x59 CCR5 5UIW CCR5 5UIW
TM2 90 2.60x60 CCR5 5UIW CCR5 5UIW
TM2 91 2.61x61 CCR5 5UIW H1 receptor 3RZE
TM2 92 2.62x62 CCR5 5UIW - -
TM2 93 2.63x63 CCR5 5UIW CCR5 5UIW
TM2 94 2.64x64 CCR5 5UIW - -
TM2 95 2.65x65 CCR5 5UIW κ receptor 4DJH
TM2 96 2.66x66 CCR5 5UIW M4 receptor 5DSG
ECL1 97 - - - -
ECL1 98 23.49x49 CCR5 5UIW apelin receptor 5VBL
ECL1 99 23.50x50 CCR5 5UIW CCR5 5UIW
ECL1 100 23.51x51 CCR5 5UIW CCR2 5T1A
ECL1 101 23.52x52 CCR5 5UIW CCR5 5UIW
TM3 102 3.21x21 CCR5 5UIW CCR5 5UIW
TM3 103 3.22x22 CCR5 5UIW κ receptor 4DJH
TM3 104 3.23x23 CCR5 5UIW CCR2 5T1A
TM3 105 3.24x24 CCR5 5UIW CCR5 5UIW
TM3 106 3.25x25 CCR5 5UIW CCR5 5UIW
TM3 107 3.26x26 CCR5 5UIW CCR2 5T1A
TM3 108 3.27x27 CCR5 5UIW AT1 receptor 4ZUD
TM3 109 3.28x28 CCR5 5UIW CCR5 5UIW
TM3 110 3.29x29 CCR5 5UIW AT1 receptor 4ZUD
TM3 111 3.30x30 CCR5 5UIW CCR5 5UIW
TM3 112 3.31x31 CCR5 5UIW Rhodopsin 1GZM
TM3 113 3.32x32 CCR5 5UIW CCR5 5UIW
TM3 114 3.33x33 CCR5 5UIW κ receptor 4DJH
TM3 115 3.34x34 CCR5 5UIW LPA1 receptor 4Z35
TM3 116 3.35x35 CCR5 5UIW CCR5 5UIW
TM3 117 3.36x36 CCR5 5UIW CXCR4 3ODU
TM3 118 3.37x37 CCR5 5UIW CXCR4 3ODU
TM3 119 3.38x38 CCR5 5UIW CCR5 5UIW
TM3 120 3.39x39 CCR5 5UIW - -
TM3 121 3.40x40 CCR5 5UIW CCR5 5UIW
TM3 122 3.41x41 CCR5 5UIW CCR5 5UIW
TM3 123 3.42x42 CCR5 5UIW CCR5 5UIW
TM3 124 3.43x43 CCR5 5UIW CCR5 5UIW
TM3 125 3.44x44 CCR5 5UIW CCR5 5UIW
TM3 126 3.45x45 CCR5 5UIW CCR5 5UIW
TM3 127 3.46x46 CCR5 5UIW CCR5 5UIW
TM3 128 3.47x47 CCR5 5UIW CCR5 5UIW
TM3 129 3.48x48 CCR5 5UIW CCR5 5UIW
TM3 130 3.49x49 CCR5 5UIW CCR5 5UIW
TM3 131 3.50x50 CCR5 5UIW CCR5 5UIW
TM3 132 3.51x51 CCR5 5UIW CCR5 5UIW
TM3 133 3.52x52 CCR5 5UIW CCR5 5UIW
TM3 134 3.53x53 CCR5 5UIW CCR5 5UIW
TM3 135 3.54x54 CCR5 5UIW CCR2 5T1A
TM3 136 3.55x55 CCR5 5UIW CCR5 5UIW
TM3 137 3.56x56 CCR5 5UIW CCR5 5UIW
ICL2 138 34.50x50 CCR5 5UIW CCR5 5UIW
ICL2 139 34.51x51 CCR5 5UIW CCR5 4MBS
ICL2 140 34.52x52 CCR5 5UIW CCR5 5UIW
ICL2 141 34.53x53 CCR5 5UIW CCR5 5UIW
ICL2 142 34.54x54 CCR5 5UIW CCR5 4MBS
ICL2 143 34.55x55 CCR5 5UIW C5a1 receptor 5O9H
ICL2 144 34.56x56 CCR5 5UIW CCR5 5UIW
ICL2 145 34.57x57 CCR5 5UIW CCR5 5UIW
TM4 146 4.38x38 CCR5 5UIW CCR5 5UIW
TM4 147 4.39x39 CCR5 5UIW CCR5 5UIW
TM4 148 4.40x40 CCR5 5UIW CCR5 5UIW
TM4 149 4.41x41 CCR5 5UIW CCR5 5UIW
TM4 150 4.42x42 CCR5 5UIW CCR5 5UIW
TM4 151 4.43x43 CCR5 5UIW CCR5 5UIW
TM4 152 4.44x44 CCR5 5UIW κ receptor 4DJH
TM4 153 4.45x45 CCR5 5UIW CCR5 5UIW
TM4 154 4.46x46 CCR5 5UIW CCR5 5UIW
TM4 155 4.47x47 CCR5 5UIW AT1 receptor 4ZUD
TM4 156 4.48x48 CCR5 5UIW CCR5 5UIW
TM4 157 4.49x49 CCR5 5UIW AT1 receptor 4ZUD
TM4 158 4.50x50 CCR5 5UIW CCR5 5UIW
TM4 159 4.51x51 CCR5 5UIW NOP receptor 5DHG
TM4 160 4.52x52 CCR5 5UIW AT1 receptor 4ZUD
TM4 161 4.53x53 CCR5 5UIW CCR5 5UIW
TM4 162 4.54x54 CCR5 5UIW 5-HT2C receptor 6BQH
TM4 163 4.55x55 CCR5 5UIW CXCR4 3ODU
TM4 164 4.56x56 CCR5 5UIW CCR5 5UIW
TM4 165 4.57x57 CCR5 5UIW CCR5 5UIW
TM4 166 4.58x59 CCR5 5UIW apelin receptor 5VBL
TM4 167 4.59x60 CCR5 5UIW CCR5 5UIW
TM4 168 4.60x61 CCR5 5UIW CCR2 5T1A
TM4 169 4.61x62 CCR5 5UIW BLT1 receptor 5X33
TM4 170 4.62x63 CCR5 5UIW AT2 receptor 5UNG
TM4 171 4.63x64 CCR5 5UIW CCR5 5UIW
TM4 172 4.64x65 CCR5 5UIW - -
ECL2 173 CCR5 5UIW - -
ECL2 174 CCR5 5UIW - -
ECL2 175 CCR5 5UIW CCR5 5UIW
ECL2 176 CCR5 5UIW - -
ECL2 177 CCR5 5UIW CCR5 5UIW
ECL2 178 CCR5 5UIW - -
ECL2 179 CCR5 5UIW - -
ECL2 180 CCR5 5UIW - -
ECL2 181 CCR5 5UIW - -
ECL2 182 CCR5 5UIW CCR5 5UIW
ECL2 183 45.50x50 CCR5 5UIW CCR5 5UIW
ECL2 184 45.51x51 CCR5 5UIW CCR5 5UIW
ECL2 185 45.52x52 CCR5 5UIW κ receptor 4DJH
ECL2 186 CCR5 5UIW CCR5 5UIW
ECL2 187 CCR5 5UIW CCR5 5UIW
ECL2 188 CCR5 5UIW CCR5 5UIW
ECL2 189 CCR5 5UIW - -
ECL2 190 CCR5 5UIW - -
TM5 191 5.30x31 CCR5 5UIW apelin receptor 5VBL
TM5 192 5.31x32 CCR5 5UIW PAR2 5NDD
TM5 193 5.32x33 CCR5 5UIW - -
TM5 194 5.33x34 CCR5 5UIW - -
TM5 195 5.34x35 CCR5 5UIW CCR5 5UIW
TM5 196 5.35x36 CCR5 5UIW CCR5 5UIW
TM5 197 5.36x37 CCR5 5UIW κ receptor 4DJH
TM5 198 5.37x38 CCR5 5UIW CCR5 5UIW
TM5 199 5.38x39 CCR5 5UIW CCR5 5UIW
TM5 200 5.39x40 CCR5 5UIW NOP receptor 5DHG
TM5 201 5.40x41 CCR5 5UIW CCR5 5UIW
TM5 202 5.41x42 CCR5 5UIW CCR5 5UIW
TM5 203 5.42x43 CCR5 5UIW ETB receptor 5X93
TM5 204 5.43x44 CCR5 5UIW CCR2 5T1A
TM5 205 5.44x45 CCR5 5UIW δ receptor 4N6H
TM5 206 5.45x46 CCR5 5UIW κ receptor 4DJH
TM5 207 5.46x461 CCR5 5UIW CCR5 5UIW
TM5 208 5.47x47 CCR5 5UIW CCR5 5UIW
TM5 209 5.48x48 CCR5 5UIW CCR5 5UIW
TM5 210 5.49x49 CCR5 5UIW CCR5 5UIW
TM5 211 5.50x50 CCR5 5UIW CCR5 5UIW
TM5 212 5.51x51 CCR5 5UIW CCR5 5UIW
TM5 213 5.52x52 CCR5 5UIW CCR5 5UIW
TM5 214 5.53x53 CCR5 5UIW CCR5 5UIW
TM5 215 5.54x54 CCR5 5UIW CCR5 5UIW
TM5 216 5.55x55 CCR5 5UIW κ receptor 4DJH
TM5 217 5.56x56 CCR5 5UIW CCR5 5UIW
TM5 218 5.57x57 CCR5 5UIW CCR5 5UIW
TM5 219 5.58x58 CCR5 5UIW CCR5 5UIW
TM5 220 5.59x59 CCR5 5UIW AT1 receptor 4ZUD
TM5 221 5.60x60 CCR5 5UIW CCR5 5UIW
TM5 222 5.61x61 CCR5 5UIW CCR5 5UIW
TM5 223 5.62x62 CCR5 5UIW CXCR4 3ODU
TM5 224 5.63x63 CCR5 5UIW CCR5 5UIW
TM5 225 5.64x64 CCR5 5UIW US28 4XT1
TM5 226 5.65x65 CCR5 5UIW CCR5 5UIW
TM5 227 5.66x66 CCR5 5UIW CCR5 5UIW
TM5 228 5.67x67 CCR5 5UIW - -
TM5 229 5.68x68 κ receptor 4DJH BLT1 receptor 5X33
ICL3 230 - - - -
ICL3 231 - - - -
ICL3 232 - - - -
ICL3 233 - - - -
TM6 234 6.30x30 CCR5 5UIW CXCR4 3ODU
TM6 235 6.31x31 CCR5 5UIW - -
TM6 236 6.32x32 CCR5 5UIW CXCR4 3ODU
TM6 237 6.33x33 CCR5 5UIW CCR2 5T1A
TM6 238 6.34x34 CCR5 5UIW CCR5 5UIW
TM6 239 6.35x35 CCR5 5UIW CCR5 5UIW
TM6 240 6.36x36 CCR5 5UIW CCR5 5UIW
TM6 241 6.37x37 CCR5 5UIW CCR5 5UIW
TM6 242 6.38x38 CCR5 5UIW CCR5 5UIW
TM6 243 6.39x39 CCR5 5UIW κ receptor 4DJH
TM6 244 6.40x40 CCR5 5UIW CCR5 5UIW
TM6 245 6.41x41 CCR5 5UIW CCR5 5UIW
TM6 246 6.42x42 CCR5 5UIW CCR5 5UIW
TM6 247 6.43x43 CCR5 5UIW LPA6 receptor 5XSZ
TM6 248 6.44x44 CCR5 5UIW CXCR4 3ODU
TM6 249 6.45x45 CCR5 5UIW CCR5 5UIW
TM6 250 6.46x46 CCR5 5UIW CCR5 5UIW
TM6 251 6.47x47 CCR5 5UIW CCR5 5UIW
TM6 252 6.48x48 CCR5 5UIW CCR5 5UIW
TM6 253 6.49x49 CCR5 5UIW CCR2 5T1A
TM6 254 6.50x50 CCR5 5UIW CCR5 5UIW
TM6 255 6.51x51 CCR5 5UIW CCR5 5UIW
TM6 256 6.52x52 CCR5 5UIW CCR5 5UIW
TM6 257 6.53x53 CCR5 5UIW apelin receptor 5VBL
TM6 258 6.54x54 CCR5 5UIW C5a1 receptor 5O9H
TM6 259 6.55x55 CCR5 5UIW CCR2 5T1A
TM6 260 6.56x56 CCR5 5UIW CCR5 5UIW
TM6 261 6.57x57 CCR5 5UIW CXCR4 3ODU
TM6 262 6.58x58 CCR5 5UIW 5-HT2C receptor 6BQH
TM6 263 6.59x59 CCR5 5UIW AT1 receptor 4ZUD
TM6 264 6.60x60 CCR5 5UIW CCR5 5UIW
TM6 265 6.61x61 CCR5 5UIW CCR5 5UIW
TM6 266 6.62x62 CCR5 4MBS - -
TM6 267 6.63x63 CCR5 4MBS - -
TM6 268 6.64x64 CCR5 4MBS - -
TM6 269 6.65x65 CCR5 4MBS - -
ECL3 270 - - - -
ECL3 271 - - - -
TM7 272 7.24x23 CCR5 5UIW - -
TM7 273 7.25x24 CCR5 5UIW CCR5 5UIW
TM7 274 7.26x25 CCR5 5UIW CXCR4 3ODU
TM7 275 7.27x26 CCR5 5UIW - -
TM7 276 7.28x27 CCR5 5UIW CCR5 5UIW
TM7 277 7.29x28 CCR5 5UIW US28 4XT1
TM7 278 7.30x29 CCR5 5UIW - -
TM7 279 7.31x30 CCR5 5UIW CCR5 5UIW
TM7 280 7.32x31 CCR5 5UIW CCR5 5UIW
TM7 281 7.33x32 CCR5 5UIW Y1 receptor 5ZBH
TM7 282 7.34x33 CCR5 5UIW CCR5 5UIW
TM7 283 7.35x34 CCR5 5UIW D4 receptor 5WIV
TM7 284 7.36x35 CCR5 5UIW CCR5 5UIW
TM7 285 7.37x36 CCR5 5UIW CCR5 5UIW
TM7 286 7.38x37 CCR5 5UIW CCR5 5UIW
TM7 287 7.39x38 CCR5 5UIW CCR5 5UIW
TM7 288 7.40x39 CCR5 5UIW A2A receptor 3VG9
TM7 289 7.41x40 CCR5 5UIW AT1 receptor 4ZUD
TM7 290 7.42x41 CCR5 5UIW CXCR4 3ODU
TM7 291 7.43x42 CCR5 5UIW AT1 receptor 4ZUD
TM7 292 7.44x43 CCR5 5UIW CCR5 5UIW
TM7 293 7.45x45 CCR5 5UIW CCR5 5UIW
TM7 294 7.46x46 CCR5 5UIW CCR5 5UIW
TM7 295 7.47x47 CCR5 5UIW CCR5 5UIW
TM7 296 7.48x48 CCR5 5UIW Y1 receptor 5ZBH
TM7 297 7.49x49 CCR5 5UIW CCR5 5UIW
TM7 298 7.50x50 CCR5 5UIW CCR5 5UIW
TM7 299 7.51x51 CCR5 5UIW CCR9 5LWE
TM7 300 7.52x52 CCR5 5UIW CCR5 5UIW
TM7 301 7.53x53 CCR5 5UIW CCR5 5UIW
TM7 302 7.54x54 CCR5 5UIW CCR5 5UIW
TM7 303 7.55x55 CCR5 5UIW CCR5 5UIW
TM7 304 7.56x56 CCR5 5UIW CCR5 5UIW
H8 305 8.47x47 CCR5 5UIW CCR5 5UIW
H8 306 8.48x48 CCR5 5UIW CCR5 4MBS
H8 307 8.49x49 CCR5 5UIW CCR9 5LWE
H8 308 8.50x50 CCR5 5UIW CCR5 5UIW
H8 309 8.51x51 CCR5 5UIW CCR5 5UIW
H8 310 8.52x52 CCR5 5UIW H1 receptor 3RZE
H8 311 8.53x53 CCR5 5UIW CCR5 5UIW
H8 312 8.54x54 CCR5 5UIW CCR5 5UIW
H8 313 8.55x55 CCR5 5UIW δ receptor 4RWD
H8 314 8.56x56 CCR5 5UIW LPA1 receptor 4Z36
H8 315 8.57x57 CCR5 5UIW δ receptor 4N6H
H8 316 8.58x58 CCR5 5UIW CCR5 5UIW
H8 317 8.59x59 CCR5 5UIW H1 receptor 3RZE
C-term 318 - - - -
C-term 319 - - - -
C-term 320 - - - -
C-term 321 - - - -
C-term 322 - - - -