CCR6 homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Intermediate (Δ distance (Å): 7.18 docs)

VERSION

2018-07-10

MAIN TEMPLATE

μ receptor (sequence similarity: 46%) PDB: 6DDE

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 75.5 18.4 6.1
Side-chains 21.9 60.0 18.1

Number of backbone templates: 5
Number of rotamer templates: 37

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5LWE
6DDE
4ZUD
5UIW
5VBL
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 36 CCR9 5LWE CCR9 5LWE
N-term 37 CCR9 5LWE CCR9 5LWE
N-term 38 CCR9 5LWE CCR9 5LWE
N-term 39 CCR9 5LWE CCR9 5LWE
N-term 40 CCR9 5LWE CCR9 5LWE
TM1 41 1.27x27 CCR9 5LWE CCR9 5LWE
TM1 42 1.28x28 CCR9 5LWE CCR9 5LWE
TM1 43 1.29x29 CCR9 5LWE CCR9 5LWE
TM1 44 1.30x30 CCR9 5LWE CCR9 5LWE
TM1 45 1.31x31 μ receptor 6DDE NTS1 receptor 4XES
TM1 46 1.32x32 μ receptor 6DDE - -
TM1 47 1.33x33 μ receptor 6DDE PAR1 3VW7
TM1 48 1.34x34 μ receptor 6DDE PAR1 3VW7
TM1 49 1.35x35 μ receptor 6DDE PAR1 3VW7
TM1 50 1.36x36 μ receptor 6DDE PAR1 3VW7
TM1 51 1.37x37 μ receptor 6DDE PAF receptor 5ZKQ
TM1 52 1.38x38 μ receptor 6DDE OX1 receptor 4ZJ8
TM1 53 1.39x39 μ receptor 6DDE μ receptor 6DDE
TM1 54 1.40x40 μ receptor 6DDE μ receptor 6DDE
TM1 55 1.41x41 μ receptor 6DDE P2Y1 receptor 4XNW
TM1 56 1.42x42 μ receptor 6DDE PAF receptor 5ZKQ
TM1 57 1.43x43 μ receptor 6DDE μ receptor 5C1M
TM1 58 1.44x44 μ receptor 6DDE PAR1 3VW7
TM1 59 1.45x45 μ receptor 6DDE CCR5 5UIW
TM1 60 1.46x46 μ receptor 6DDE μ receptor 6DDE
TM1 61 1.47x47 μ receptor 6DDE PAR1 3VW7
TM1 62 1.48x48 μ receptor 6DDE P2Y1 receptor 4XNW
TM1 63 1.49x49 μ receptor 6DDE μ receptor 6DDE
TM1 64 1.50x50 μ receptor 6DDE μ receptor 6DDE
TM1 65 1.51x51 μ receptor 6DDE PAR1 3VW7
TM1 66 1.52x52 μ receptor 6DDE μ receptor 6DDE
TM1 67 1.53x53 μ receptor 6DDE μ receptor 6DDE
TM1 68 1.54x54 μ receptor 6DDE CCR2 5T1A
TM1 69 1.55x55 μ receptor 6DDE AT1 receptor 4ZUD
TM1 70 1.56x56 μ receptor 6DDE NTS1 receptor 4XES
TM1 71 1.57x57 μ receptor 6DDE PAR1 3VW7
TM1 72 1.58x58 μ receptor 6DDE PAF receptor 5ZKQ
TM1 73 1.59x59 μ receptor 6DDE P2Y1 receptor 4XNW
TM1 74 1.60x60 μ receptor 6DDE μ receptor 6DDE
ICL1 75 12.48x48 - - - -
ICL1 76 12.49x49 AT1 receptor 4ZUD 5-HT2B receptor 4NC3
ICL1 77 12.50x50 AT1 receptor 4ZUD - -
ICL1 78 12.51x51 - - - -
TM2 79 2.37x37 CCR9 5LWE P2Y1 receptor 4XNW
TM2 80 2.38x38 μ receptor 6DDE CCR5 5UIW
TM2 81 2.39x39 μ receptor 6DDE μ receptor 6DDE
TM2 82 2.40x40 μ receptor 6DDE CCR9 5LWE
TM2 83 2.41x41 μ receptor 6DDE PAR1 3VW7
TM2 84 2.42x42 μ receptor 6DDE μ receptor 6DDE
TM2 85 2.43x43 μ receptor 6DDE P2Y12 receptor 4NTJ
TM2 86 2.44x44 μ receptor 6DDE PAR1 3VW7
TM2 87 2.45x45 μ receptor 6DDE μ receptor 6DDE
TM2 88 2.46x46 μ receptor 6DDE - -
TM2 89 2.47x47 μ receptor 6DDE μ receptor 6DDE
TM2 90 2.48x48 μ receptor 6DDE P2Y12 receptor 4NTJ
TM2 91 2.49x49 μ receptor 6DDE μ receptor 6DDE
TM2 92 2.50x50 μ receptor 6DDE μ receptor 6DDE
TM2 93 2.51x51 μ receptor 6DDE A2A receptor 4UHR
TM2 94 2.52x52 μ receptor 6DDE μ receptor 6DDE
TM2 95 2.53x53 μ receptor 6DDE PAR1 3VW7
TM2 96 2.54x54 μ receptor 6DDE PAR1 3VW7
TM2 97 2.55x55 μ receptor 6DDE P2Y1 receptor 4XNW
TM2 98 2.56x56 μ receptor 6DDE μ receptor 6DDE
TM2 99 2.57x57 μ receptor 6DDE μ receptor 6DDE
TM2 100 2.58x58 μ receptor 6DDE μ receptor 6DDE
TM2 101 2.59x59 μ receptor 6DDE μ receptor 6DDE
TM2 102 2.60x60 μ receptor 6DDE PAF receptor 5ZKQ
TM2 103 2.61x61 μ receptor 6DDE FFA1 receptor 5TZY
TM2 104 2.62x62 μ receptor 6DDE μ receptor 6DDE
TM2 105 2.63x63 μ receptor 6DDE P2Y12 receptor 4NTJ
TM2 106 2.64x64 μ receptor 6DDE PAR2 5NDD
TM2 107 2.65x65 μ receptor 6DDE P2Y12 receptor 4NTJ
TM2 108 2.66x66 μ receptor 6DDE 5-HT1B receptor 4IAQ
ECL1 109 - - - -
ECL1 110 23.49x49 CCR5 5UIW FFA1 receptor 5TZY
ECL1 111 23.50x50 CCR5 5UIW CCR5 5UIW
ECL1 112 23.51x51 CCR5 5UIW CCR2 5T1A
ECL1 113 23.52x52 - - - -
TM3 114 3.21x21 μ receptor 6DDE D4 receptor 5WIV
TM3 115 3.22x22 μ receptor 6DDE μ receptor 6DDE
TM3 116 3.23x23 μ receptor 6DDE P2Y1 receptor 4XNW
TM3 117 3.24x24 μ receptor 6DDE LPA1 receptor 4Z35
TM3 118 3.25x25 μ receptor 6DDE μ receptor 6DDE
TM3 119 3.26x26 μ receptor 6DDE μ receptor 6DDE
TM3 120 3.27x27 μ receptor 6DDE P2Y1 receptor 4XNW
TM3 121 3.28x28 μ receptor 6DDE PAR2 5NDD
TM3 122 3.29x29 μ receptor 6DDE - -
TM3 123 3.30x30 μ receptor 6DDE PAR2 5NDD
TM3 124 3.31x31 μ receptor 6DDE μ receptor 6DDE
TM3 125 3.32x32 μ receptor 6DDE CCR9 5LWE
TM3 126 3.33x33 μ receptor 6DDE OX1 receptor 4ZJ8
TM3 127 3.34x34 μ receptor 6DDE PAF receptor 5ZKQ
TM3 128 3.35x35 μ receptor 6DDE μ receptor 6DDE
TM3 129 3.36x36 μ receptor 6DDE CCR9 5LWE
TM3 130 3.37x37 μ receptor 6DDE M3 receptor 4U15
TM3 131 3.38x38 μ receptor 6DDE PAF receptor 5ZKQ
TM3 132 3.39x39 μ receptor 6DDE FFA1 receptor 5TZY
TM3 133 3.40x40 μ receptor 6DDE - -
TM3 134 3.41x41 μ receptor 6DDE PAR1 3VW7
TM3 135 3.42x42 μ receptor 6DDE PAR1 3VW7
TM3 136 3.43x43 μ receptor 6DDE μ receptor 6DDE
TM3 137 3.44x44 μ receptor 6DDE PAR1 3VW7
TM3 138 3.45x45 μ receptor 6DDE P2Y1 receptor 4XNW
TM3 139 3.46x46 μ receptor 6DDE PAR1 3VW7
TM3 140 3.47x47 μ receptor 6DDE μ receptor 6DDE
TM3 141 3.48x48 μ receptor 6DDE - -
TM3 142 3.49x49 μ receptor 6DDE μ receptor 6DDE
TM3 143 3.50x50 μ receptor 6DDE μ receptor 6DDE
TM3 144 3.51x51 μ receptor 6DDE μ receptor 6DDE
TM3 145 3.52x52 μ receptor 6DDE μ receptor 6DDE
TM3 146 3.53x53 μ receptor 6DDE μ receptor 6DDE
TM3 147 3.54x54 μ receptor 6DDE PAR2 5NDD
TM3 148 3.55x55 μ receptor 6DDE PAR1 3VW7
TM3 149 3.56x56 μ receptor 6DDE CCR9 5LWE
ICL2 150 34.50x50 μ receptor 6DDE 5-HT1B receptor 4IAQ
ICL2 151 34.51x51 μ receptor 6DDE - -
ICL2 152 34.52x52 μ receptor 6DDE μ receptor 6DDE
ICL2 153 34.53x53 μ receptor 6DDE P2Y1 receptor 4XNW
ICL2 154 34.54x54 μ receptor 6DDE Rhodopsin 4ZWJ
ICL2 155 34.55x55 μ receptor 6DDE C5a1 receptor 5O9H
ICL2 156 34.56x56 μ receptor 6DDE NTS1 receptor 4XES
ICL2 157 34.57x57 μ receptor 6DDE μ receptor 6DDE
ICL2 158 34.58x58 - - - -
ICL2 159 - - - -
TM4 160 4.38x38 μ receptor 6DDE μ receptor 6DDE
TM4 161 4.39x39 μ receptor 6DDE PAR1 3VW7
TM4 162 4.40x40 μ receptor 6DDE CB1 receptor 5XRA
TM4 163 4.41x41 μ receptor 6DDE PAR1 3VW7
TM4 164 4.42x42 μ receptor 6DDE FFA1 receptor 5TZY
TM4 165 4.43x43 μ receptor 6DDE μ receptor 6DDE
TM4 166 4.44x44 μ receptor 6DDE μ receptor 6DDE
TM4 167 4.45x45 μ receptor 6DDE P2Y1 receptor 4XNW
TM4 168 4.46x46 μ receptor 6DDE PAR1 3VW7
TM4 169 4.47x47 μ receptor 6DDE PAR1 3VW7
TM4 170 4.48x48 μ receptor 6DDE PAF receptor 5ZKQ
TM4 171 4.49x49 μ receptor 6DDE P2Y1 receptor 4XNW
TM4 172 4.50x50 μ receptor 6DDE μ receptor 6DDE
TM4 173 4.51x51 μ receptor 6DDE BLT1 receptor 5X33
TM4 174 4.52x52 μ receptor 6DDE μ receptor 6DDE
TM4 175 4.53x53 μ receptor 6DDE μ receptor 6DDE
TM4 176 4.54x54 μ receptor 6DDE P2Y1 receptor 4XNW
TM4 177 4.55x55 μ receptor 6DDE US28 4XT1
TM4 178 4.56x56 μ receptor 6DDE μ receptor 6DDE
TM4 179 4.57x57 μ receptor 6DDE P2Y12 receptor 4NTJ
TM4 180 4.58x58 μ receptor 6DDE P2Y1 receptor 4XNW
TM4 181 4.59x59 μ receptor 6DDE κ receptor 4DJH
TM4 182 4.60x60 μ receptor 6DDE LPA6 receptor 5XSZ
TM4 183 4.61x61 μ receptor 6DDE FFA1 receptor 5TZY
TM4 184 4.62x62 μ receptor 6DDE κ receptor 4DJH
TM4 185 4.63x63 CCR5 5UIW NTS1 receptor 4XES
TM4 186 4.64x64 CCR5 5UIW - -
ECL2 187 μ receptor 6DDE - -
ECL2 188 μ receptor 6DDE - -
ECL2 189 μ receptor 6DDE - -
ECL2 190 μ receptor 6DDE - -
ECL2 191 μ receptor 6DDE - -
ECL2 192 μ receptor 6DDE - -
ECL2 193 μ receptor 6DDE μ receptor 6DDE
ECL2 194 μ receptor 6DDE μ receptor 6DDE
ECL2 195 μ receptor 6DDE - -
ECL2 196 μ receptor 6DDE - -
ECL2 197 45.50x50 μ receptor 6DDE μ receptor 6DDE
ECL2 198 45.51x51 μ receptor 6DDE H1 receptor 3RZE
ECL2 199 45.52x52 μ receptor 6DDE NTS1 receptor 4XES
ECL2 200 - - - -
ECL2 201 apelin receptor 5VBL apelin receptor 5VBL
ECL2 202 apelin receptor 5VBL - -
ECL2 203 apelin receptor 5VBL - -
ECL2 204 apelin receptor 5VBL apelin receptor 5VBL
ECL2 205 apelin receptor 5VBL - -
ECL2 206 apelin receptor 5VBL - -
ECL2 207 apelin receptor 5VBL - -
ECL2 208 - - - -
TM5 209 5.33x34 μ receptor 6DDE P2Y1 receptor 4XNW
TM5 210 5.34x35 μ receptor 6DDE μ receptor 6DDE
TM5 211 5.35x36 μ receptor 6DDE CCR5 5UIW
TM5 212 5.36x37 μ receptor 6DDE PAF receptor 5ZKQ
TM5 213 5.37x38 μ receptor 6DDE μ receptor 6DDE
TM5 214 5.38x39 μ receptor 6DDE κ receptor 4DJH
TM5 215 5.39x40 μ receptor 6DDE BLT1 receptor 5X33
TM5 216 5.40x41 μ receptor 6DDE - -
TM5 217 5.41x42 μ receptor 6DDE Y1 receptor 5ZBH
TM5 218 5.42x43 μ receptor 6DDE BLT1 receptor 5X33
TM5 219 5.43x44 μ receptor 6DDE C5a1 receptor 5O9H
TM5 220 5.44x45 μ receptor 6DDE 5-HT2B receptor 4IB4
TM5 221 5.45x46 μ receptor 6DDE μ receptor 6DDE
TM5 222 5.46x461 μ receptor 6DDE CCR5 5UIW
TM5 223 5.47x47 μ receptor 6DDE μ receptor 6DDE
TM5 224 5.48x48 μ receptor 6DDE PAR1 3VW7
TM5 225 5.49x49 μ receptor 6DDE P2Y12 receptor 4NTJ
TM5 226 5.50x50 μ receptor 6DDE μ receptor 6DDE
TM5 227 5.51x51 μ receptor 6DDE PAR1 3VW7
TM5 228 5.52x52 μ receptor 6DDE - -
TM5 229 5.53x53 μ receptor 6DDE AT2 receptor 5UNG
TM5 230 5.54x54 μ receptor 6DDE A2A receptor 4UHR
TM5 231 5.55x55 μ receptor 6DDE P2Y12 receptor 4NTJ
TM5 232 5.56x56 μ receptor 6DDE PAF receptor 5ZKQ
TM5 233 5.57x57 μ receptor 6DDE μ receptor 6DDE
TM5 234 5.58x58 μ receptor 6DDE μ receptor 6DDE
TM5 235 5.59x59 μ receptor 6DDE P2Y12 receptor 4NTJ
TM5 236 5.60x60 μ receptor 6DDE C5a1 receptor 5O9H
TM5 237 5.61x61 μ receptor 6DDE PAR1 3VW7
TM5 238 5.62x62 μ receptor 6DDE P2Y1 receptor 4XNW
TM5 239 5.63x63 μ receptor 6DDE P2Y12 receptor 4NTJ
TM5 240 5.64x64 μ receptor 6DDE PAF receptor 5ZKQ
TM5 241 5.65x65 μ receptor 6DDE μ receptor 6DDE
TM5 242 5.66x66 μ receptor 6DDE - -
TM5 243 5.67x67 μ receptor 6DDE - -
TM5 244 5.68x68 μ receptor 6DDE C5a1 receptor 5O9H
ICL3 245 - - - -
ICL3 246 - - - -
ICL3 247 - - - -
ICL3 248 - - - -
TM6 249 6.30x30 μ receptor 6DDE FFA1 receptor 5TZY
TM6 250 6.31x31 μ receptor 6DDE CCR9 5LWE
TM6 251 6.32x32 μ receptor 6DDE PAR2 5NDD
TM6 252 6.33x33 μ receptor 6DDE A2A receptor 4UHR
TM6 253 6.34x34 μ receptor 6DDE - -
TM6 254 6.35x35 μ receptor 6DDE μ receptor 6DDE
TM6 255 6.36x36 μ receptor 6DDE P2Y12 receptor 4PXZ
TM6 256 6.37x37 μ receptor 6DDE CCR5 5UIW
TM6 257 6.38x38 μ receptor 6DDE CCR9 5LWE
TM6 258 6.39x39 μ receptor 6DDE PAR1 3VW7
TM6 259 6.40x40 μ receptor 6DDE μ receptor 6DDE
TM6 260 6.41x41 μ receptor 6DDE μ receptor 6DDE
TM6 261 6.42x42 μ receptor 6DDE P2Y1 receptor 4XNW
TM6 262 6.43x43 μ receptor 6DDE μ receptor 6DDE
TM6 263 6.44x44 μ receptor 6DDE μ receptor 6DDE
TM6 264 6.45x45 μ receptor 6DDE 5-HT2B receptor 4IB4
TM6 265 6.46x46 μ receptor 6DDE P2Y1 receptor 4XNW
TM6 266 6.47x47 μ receptor 6DDE PAR1 3VW7
TM6 267 6.48x48 μ receptor 6DDE CCR9 5LWE
TM6 268 6.49x49 μ receptor 6DDE P2Y1 receptor 4XNW
TM6 269 6.50x50 μ receptor 6DDE μ receptor 6DDE
TM6 270 6.51x51 μ receptor 6DDE PAF receptor 5ZKQ
TM6 271 6.52x52 μ receptor 6DDE PAR1 3VW7
TM6 272 6.53x53 μ receptor 6DDE - -
TM6 273 6.54x54 μ receptor 6DDE PAF receptor 5ZKQ
TM6 274 6.55x55 μ receptor 6DDE PAR1 3VW7
TM6 275 6.56x56 μ receptor 6DDE PAF receptor 5ZKQ
TM6 276 6.57x57 μ receptor 6DDE PAR2 5NDD
TM6 277 6.58x58 μ receptor 6DDE A2A receptor 4UHR
TM6 278 6.59x59 μ receptor 6DDE μ receptor 6DDE
TM6 279 6.60x60 μ receptor 6DDE - -
TM6 280 6.61x61 μ receptor 6DDE Y1 receptor 5ZBH
TM6 281 6.62x62 CCR9 5LWE PAR1 3VW7
TM6 282 6.63x63 CCR9 5LWE - -
TM6 283 6.64x64 CCR9 5LWE US28 4XT1
TM6 284 6.65x65 CCR9 5LWE CCR9 5LWE
ECL3 285 - - - -
ECL3 286 - - - -
TM7 287 7.24x23 CCR9 5LWE US28 5WB1
TM7 288 7.25x24 CCR9 5LWE CCR9 5LWE
TM7 289 7.26x25 CCR9 5LWE - -
TM7 290 7.27x26 CCR9 5LWE CCR5 5UIW
TM7 291 7.28x27 CCR9 5LWE P2Y12 receptor 4NTJ
TM7 292 7.29x28 CCR9 5LWE 5-HT2C receptor 6BQH
TM7 293 7.30x29 μ receptor 6DDE C5a1 receptor 5O9H
TM7 294 7.31x30 μ receptor 6DDE PAF receptor 5ZKQ
TM7 295 7.32x31 μ receptor 6DDE FFA1 receptor 5TZY
TM7 296 7.33x32 μ receptor 6DDE P2Y12 receptor 4NTJ
TM7 297 7.34x33 μ receptor 6DDE P2Y1 receptor 4XNW
TM7 298 7.35x34 μ receptor 6DDE P2Y12 receptor 4NTJ
TM7 299 7.36x35 μ receptor 6DDE OX2 receptor 5WS3
TM7 300 7.37x36 μ receptor 6DDE P2Y1 receptor 4XNW
TM7 301 7.38x37 μ receptor 6DDE P2Y1 receptor 4XNW
TM7 302 7.39x38 μ receptor 6DDE CCR5 5UIW
TM7 303 7.40x39 μ receptor 6DDE A2A receptor 4UHR
TM7 304 7.41x40 μ receptor 6DDE μ receptor 6DDE
TM7 305 7.42x41 μ receptor 6DDE P2Y1 receptor 4XNW
TM7 306 7.43x42 μ receptor 6DDE CCR9 5LWE
TM7 307 7.44x43 μ receptor 6DDE P2Y1 receptor 4XNW
TM7 308 7.45x45 μ receptor 6DDE CCR9 5LWE
TM7 309 7.46x46 μ receptor 6DDE PAR1 3VW7
TM7 310 7.47x47 μ receptor 6DDE μ receptor 6DDE
TM7 311 7.48x48 μ receptor 6DDE μ receptor 6DDE
TM7 312 7.49x49 μ receptor 6DDE μ receptor 6DDE
TM7 313 7.50x50 μ receptor 6DDE μ receptor 6DDE
TM7 314 7.51x51 μ receptor 6DDE μ receptor 6DDE
TM7 315 7.52x52 μ receptor 6DDE μ receptor 6DDE
TM7 316 7.53x53 μ receptor 6DDE μ receptor 6DDE
TM7 317 7.54x54 μ receptor 6DDE μ receptor 6DDE
TM7 318 7.55x55 CCR9 5LWE CCR9 5LWE
TM7 319 7.56x56 CCR9 5LWE - -
H8 320 8.47x47 CCR9 5LWE CCR9 5LWE
H8 321 8.48x48 CCR9 5LWE A1 receptor 5UEN
H8 322 8.49x49 CCR9 5LWE CCR2 5T1A
H8 323 8.50x50 CCR9 5LWE P2Y12 receptor 4NTJ
H8 324 8.51x51 CCR9 5LWE P2Y12 receptor 4NTJ
H8 325 8.52x52 CCR9 5LWE P2Y12 receptor 4NTJ
H8 326 8.53x53 CCR9 5LWE CCR5 5UIW
H8 327 8.54x54 CCR9 5LWE A2A receptor 4UHR
H8 328 8.55x55 CCR9 5LWE CCR5 5UIW
H8 329 8.56x56 CCR9 5LWE A2A receptor 4UHR
H8 330 8.57x57 CCR9 5LWE A2A receptor 4UHR
H8 331 8.58x58 CCR9 5LWE PAR2 5NDD
H8 332 8.59x59 CCR9 5LWE CCR9 5LWE
H8 333 8.60x60 CCR9 5LWE A1 receptor 5UEN
H8 334 8.61x61 CCR9 5LWE CCR9 5LWE
H8 335 8.62x62 CCR9 5LWE - -
H8 336 8.63x63 CCR9 5LWE - -
H8 337 8.64x64 CCR9 5LWE - -
H8 338 8.65x65 CCR9 5LWE - -
H8 339 8.66x66 CCR9 5LWE - -
H8 340 8.67x67 CCR9 5LWE - -
C-term 341 - - - -
C-term 342 - - - -
C-term 343 - - - -
C-term 344 - - - -
C-term 345 - - - -