CCR7 homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Intermediate (Δ distance (Å): 7.2 docs)

VERSION

2018-07-10

MAIN TEMPLATE

μ receptor (sequence similarity: 46%) PDB: 6DDE

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 73.4 20.5 6.2
Side-chains 20.5 59.1 20.5

Number of backbone templates: 5
Number of rotamer templates: 35

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5LWE
6DDE
4ZUD
5UIW
5VBL
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 48 CCR9 5LWE CCR9 5LWE
N-term 49 CCR9 5LWE CCR9 5LWE
N-term 50 CCR9 5LWE CCR9 5LWE
N-term 51 CCR9 5LWE CCR9 5LWE
N-term 52 CCR9 5LWE CCR9 5LWE
TM1 53 1.27x27 CCR9 5LWE CCR9 5LWE
TM1 54 1.28x28 CCR9 5LWE CCR9 5LWE
TM1 55 1.29x29 CCR9 5LWE CXCR4 3ODU
TM1 56 1.30x30 CCR9 5LWE CCR9 5LWE
TM1 57 1.31x31 μ receptor 6DDE - -
TM1 58 1.32x32 μ receptor 6DDE μ receptor 6DDE
TM1 59 1.33x33 μ receptor 6DDE OX2 receptor 5WS3
TM1 60 1.34x34 μ receptor 6DDE PAR1 3VW7
TM1 61 1.35x35 μ receptor 6DDE P2Y1 receptor 4XNW
TM1 62 1.36x36 μ receptor 6DDE PAR1 3VW7
TM1 63 1.37x37 μ receptor 6DDE PAF receptor 5ZKQ
TM1 64 1.38x38 μ receptor 6DDE - -
TM1 65 1.39x39 μ receptor 6DDE μ receptor 6DDE
TM1 66 1.40x40 μ receptor 6DDE μ receptor 6DDE
TM1 67 1.41x41 μ receptor 6DDE μ receptor 6DDE
TM1 68 1.42x42 μ receptor 6DDE PAF receptor 5ZKQ
TM1 69 1.43x43 μ receptor 6DDE μ receptor 5C1M
TM1 70 1.44x44 μ receptor 6DDE P2Y12 receptor 4NTJ
TM1 71 1.45x45 μ receptor 6DDE μ receptor 6DDE
TM1 72 1.46x46 μ receptor 6DDE μ receptor 6DDE
TM1 73 1.47x47 μ receptor 6DDE PAR1 3VW7
TM1 74 1.48x48 μ receptor 6DDE P2Y1 receptor 4XNW
TM1 75 1.49x49 μ receptor 6DDE μ receptor 6DDE
TM1 76 1.50x50 μ receptor 6DDE μ receptor 6DDE
TM1 77 1.51x51 μ receptor 6DDE PAF receptor 5ZKQ
TM1 78 1.52x52 μ receptor 6DDE μ receptor 6DDE
TM1 79 1.53x53 μ receptor 6DDE μ receptor 6DDE
TM1 80 1.54x54 μ receptor 6DDE CCR2 5T1A
TM1 81 1.55x55 μ receptor 6DDE 5-HT2B receptor 4IB4
TM1 82 1.56x56 μ receptor 6DDE NTS1 receptor 4XES
TM1 83 1.57x57 μ receptor 6DDE CCR9 5LWE
TM1 84 1.58x58 μ receptor 6DDE PAR1 3VW7
TM1 85 1.59x59 μ receptor 6DDE CCR9 5LWE
TM1 86 1.60x60 μ receptor 6DDE - -
ICL1 87 12.48x48 - - - -
ICL1 88 12.49x49 AT1 receptor 4ZUD β2-adrenoceptor 5JQH
ICL1 89 12.50x50 AT1 receptor 4ZUD AT1 receptor 4ZUD
ICL1 90 12.51x51 - - - -
TM2 91 2.37x37 CCR9 5LWE CCR9 5LWE
TM2 92 2.38x38 μ receptor 6DDE CCR5 5UIW
TM2 93 2.39x39 μ receptor 6DDE μ receptor 6DDE
TM2 94 2.40x40 μ receptor 6DDE CCR9 5LWE
TM2 95 2.41x41 μ receptor 6DDE LPA6 receptor 5XSZ
TM2 96 2.42x42 μ receptor 6DDE μ receptor 6DDE
TM2 97 2.43x43 μ receptor 6DDE P2Y12 receptor 4NTJ
TM2 98 2.44x44 μ receptor 6DDE PAR1 3VW7
TM2 99 2.45x45 μ receptor 6DDE μ receptor 6DDE
TM2 100 2.46x46 μ receptor 6DDE μ receptor 6DDE
TM2 101 2.47x47 μ receptor 6DDE μ receptor 6DDE
TM2 102 2.48x48 μ receptor 6DDE 5-HT2B receptor 4IB4
TM2 103 2.49x49 μ receptor 6DDE μ receptor 6DDE
TM2 104 2.50x50 μ receptor 6DDE μ receptor 6DDE
TM2 105 2.51x51 μ receptor 6DDE A2A receptor 4UHR
TM2 106 2.52x52 μ receptor 6DDE μ receptor 6DDE
TM2 107 2.53x53 μ receptor 6DDE PAR1 3VW7
TM2 108 2.54x54 μ receptor 6DDE PAF receptor 5ZKQ
TM2 109 2.55x55 μ receptor 6DDE P2Y1 receptor 4XNW
TM2 110 2.56x56 μ receptor 6DDE μ receptor 6DDE
TM2 111 2.57x57 μ receptor 6DDE μ receptor 6DDE
TM2 112 2.58x58 μ receptor 6DDE μ receptor 6DDE
TM2 113 2.59x59 μ receptor 6DDE μ receptor 6DDE
TM2 114 2.60x60 μ receptor 6DDE PAF receptor 5ZKQ
TM2 115 2.61x61 μ receptor 6DDE FFA1 receptor 5TZY
TM2 116 2.62x62 μ receptor 6DDE NTS1 receptor 4XES
TM2 117 2.63x63 μ receptor 6DDE P2Y12 receptor 4NTJ
TM2 118 2.64x64 μ receptor 6DDE FFA1 receptor 5TZY
TM2 119 2.65x65 μ receptor 6DDE P2Y12 receptor 4NTJ
TM2 120 2.66x66 μ receptor 6DDE M4 receptor 5DSG
ECL1 121 23.49x49 - - - -
ECL1 122 23.50x50 CCR5 5UIW CCR5 5UIW
ECL1 123 23.51x51 CCR5 5UIW CCR2 5T1A
ECL1 124 23.52x52 - - - -
TM3 125 3.21x21 μ receptor 6DDE μ receptor 6DDE
TM3 126 3.22x22 μ receptor 6DDE LPA1 receptor 4Z35
TM3 127 3.23x23 μ receptor 6DDE A2A receptor 4UHR
TM3 128 3.24x24 μ receptor 6DDE apelin receptor 5VBL
TM3 129 3.25x25 μ receptor 6DDE μ receptor 6DDE
TM3 130 3.26x26 μ receptor 6DDE μ receptor 6DDE
TM3 131 3.27x27 μ receptor 6DDE P2Y1 receptor 4XNW
TM3 132 3.28x28 μ receptor 6DDE A2A receptor 4UHR
TM3 133 3.29x29 μ receptor 6DDE - -
TM3 134 3.30x30 μ receptor 6DDE PAR1 3VW7
TM3 135 3.31x31 μ receptor 6DDE μ receptor 6DDE
TM3 136 3.32x32 μ receptor 6DDE CCR9 5LWE
TM3 137 3.33x33 μ receptor 6DDE CCR9 5LWE
TM3 138 3.34x34 μ receptor 6DDE CCR9 5LWE
TM3 139 3.35x35 μ receptor 6DDE BLT1 receptor 5X33
TM3 140 3.36x36 μ receptor 6DDE CCR9 5LWE
TM3 141 3.37x37 μ receptor 6DDE μ receptor 6DDE
TM3 142 3.38x38 μ receptor 6DDE A2A receptor 4UHR
TM3 143 3.39x39 μ receptor 6DDE FFA1 receptor 5TZY
TM3 144 3.40x40 μ receptor 6DDE - -
TM3 145 3.41x41 μ receptor 6DDE PAR1 3VW7
TM3 146 3.42x42 μ receptor 6DDE PAR1 3VW7
TM3 147 3.43x43 μ receptor 6DDE μ receptor 6DDE
TM3 148 3.44x44 μ receptor 6DDE A2A receptor 4UHR
TM3 149 3.45x45 μ receptor 6DDE P2Y1 receptor 4XNW
TM3 150 3.46x46 μ receptor 6DDE PAR1 3VW7
TM3 151 3.47x47 μ receptor 6DDE μ receptor 6DDE
TM3 152 3.48x48 μ receptor 6DDE PAR1 3VW7
TM3 153 3.49x49 μ receptor 6DDE μ receptor 6DDE
TM3 154 3.50x50 μ receptor 6DDE μ receptor 6DDE
TM3 155 3.51x51 μ receptor 6DDE μ receptor 6DDE
TM3 156 3.52x52 μ receptor 6DDE NOP receptor 5DHG
TM3 157 3.53x53 μ receptor 6DDE μ receptor 6DDE
TM3 158 3.54x54 μ receptor 6DDE PAR2 5NDD
TM3 159 3.55x55 μ receptor 6DDE PAR1 3VW7
TM3 160 3.56x56 μ receptor 6DDE CCR9 5LWE
ICL2 161 34.50x50 μ receptor 6DDE 5-HT1B receptor 4IAQ
ICL2 162 34.51x51 μ receptor 6DDE μ receptor 6DDE
ICL2 163 34.52x52 μ receptor 6DDE M1 receptor 5CXV
ICL2 164 34.53x53 μ receptor 6DDE μ receptor 6DDE
ICL2 165 34.54x54 μ receptor 6DDE CCR9 5LWE
ICL2 166 34.55x55 μ receptor 6DDE C5a1 receptor 5O9H
ICL2 167 34.56x56 μ receptor 6DDE - -
ICL2 168 34.57x57 μ receptor 6DDE μ receptor 6DDE
ICL2 169 34.58x58 - - - -
ICL2 170 - - - -
TM4 171 4.38x38 μ receptor 6DDE - -
TM4 172 4.39x39 μ receptor 6DDE PAR1 3VW7
TM4 173 4.40x40 μ receptor 6DDE P2Y12 receptor 4PXZ
TM4 174 4.41x41 μ receptor 6DDE PAR2 5NDD
TM4 175 4.42x42 μ receptor 6DDE FFA1 receptor 5TZY
TM4 176 4.43x43 μ receptor 6DDE μ receptor 6DDE
TM4 177 4.44x44 μ receptor 6DDE US28 4XT1
TM4 178 4.45x45 μ receptor 6DDE OX2 receptor 5WS3
TM4 179 4.46x46 μ receptor 6DDE PAR1 3VW7
TM4 180 4.47x47 μ receptor 6DDE μ receptor 6DDE
TM4 181 4.48x48 μ receptor 6DDE CXCR4 3ODU
TM4 182 4.49x49 μ receptor 6DDE PAR1 3VW7
TM4 183 4.50x50 μ receptor 6DDE μ receptor 6DDE
TM4 184 4.51x51 μ receptor 6DDE μ receptor 6DDE
TM4 185 4.52x52 μ receptor 6DDE μ receptor 6DDE
TM4 186 4.53x53 μ receptor 6DDE PAR1 3VW7
TM4 187 4.54x54 μ receptor 6DDE - -
TM4 188 4.55x55 μ receptor 6DDE P2Y1 receptor 4XNW
TM4 189 4.56x56 μ receptor 6DDE P2Y12 receptor 4NTJ
TM4 190 4.57x57 CCR9 5LWE P2Y12 receptor 4NTJ
TM4 191 4.58x59 CCR9 5LWE PAR2 5NDD
TM4 192 4.59x60 μ receptor 6DDE PAR1 3VW7
TM4 193 4.60x61 μ receptor 6DDE CCR9 5LWE
TM4 194 4.61x62 μ receptor 6DDE PAR1 3VW7
TM4 195 4.62x63 CCR5 5UIW PAR1 3VW7
TM4 196 4.63x64 CCR5 5UIW C5a1 receptor 5O9H
TM4 197 4.64x65 CCR5 5UIW - -
ECL2 198 - - - -
ECL2 199 apelin receptor 5VBL - -
ECL2 200 apelin receptor 5VBL - -
ECL2 201 apelin receptor 5VBL - -
ECL2 202 apelin receptor 5VBL - -
ECL2 203 apelin receptor 5VBL - -
ECL2 204 apelin receptor 5VBL - -
ECL2 205 apelin receptor 5VBL - -
ECL2 206 apelin receptor 5VBL - -
ECL2 207 apelin receptor 5VBL - -
ECL2 208 apelin receptor 5VBL - -
ECL2 209 - - - -
ECL2 210 45.50x50 μ receptor 6DDE μ receptor 6DDE
ECL2 211 45.51x51 μ receptor 6DDE CCR5 5UIW
ECL2 212 45.52x52 μ receptor 6DDE μ receptor 6DDE
ECL2 213 μ receptor 6DDE - -
ECL2 214 μ receptor 6DDE - -
ECL2 215 μ receptor 6DDE - -
ECL2 216 μ receptor 6DDE - -
ECL2 217 μ receptor 6DDE - -
TM5 218 5.33x34 μ receptor 6DDE - -
TM5 219 5.34x35 μ receptor 6DDE - -
TM5 220 5.35x36 μ receptor 6DDE 5-HT2B receptor 4IB4
TM5 221 5.36x37 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM5 222 5.37x38 μ receptor 6DDE M3 receptor 4U15
TM5 223 5.38x39 μ receptor 6DDE PAF receptor 5ZKQ
TM5 224 5.39x40 μ receptor 6DDE CXCR4 3ODU
TM5 225 5.40x41 μ receptor 6DDE A2A receptor 4UHR
TM5 226 5.41x42 μ receptor 6DDE β2-adrenoceptor 3SN6
TM5 227 5.42x43 μ receptor 6DDE - -
TM5 228 5.43x44 μ receptor 6DDE US28 4XT1
TM5 229 5.44x45 μ receptor 6DDE PAR1 3VW7
TM5 230 5.45x46 μ receptor 6DDE P2Y12 receptor 4NTJ
TM5 231 5.46x461 μ receptor 6DDE CCR5 5UIW
TM5 232 5.47x47 μ receptor 6DDE μ receptor 6DDE
TM5 233 5.48x48 μ receptor 6DDE PAR2 5NDD
TM5 234 5.49x49 μ receptor 6DDE PAR1 3VW7
TM5 235 5.50x50 μ receptor 6DDE μ receptor 6DDE
TM5 236 5.51x51 μ receptor 6DDE PAR1 3VW7
TM5 237 5.52x52 μ receptor 6DDE PAF receptor 5ZKQ
TM5 238 5.53x53 μ receptor 6DDE - -
TM5 239 5.54x54 μ receptor 6DDE 5-HT2B receptor 4IB4
TM5 240 5.55x55 μ receptor 6DDE NTS1 receptor 4XES
TM5 241 5.56x56 μ receptor 6DDE PAF receptor 5ZKQ
TM5 242 5.57x57 μ receptor 6DDE μ receptor 6DDE
TM5 243 5.58x58 μ receptor 6DDE μ receptor 6DDE
TM5 244 5.59x59 μ receptor 6DDE PAF receptor 5ZKQ
TM5 245 5.60x60 μ receptor 6DDE PAF receptor 5ZKQ
TM5 246 5.61x61 μ receptor 6DDE PAR1 3VW7
TM5 247 5.62x62 μ receptor 6DDE μ receptor 6DDE
TM5 248 5.63x63 μ receptor 6DDE PAR1 3VW7
TM5 249 5.64x64 μ receptor 6DDE PAF receptor 5ZKQ
TM5 250 5.65x65 μ receptor 6DDE μ receptor 6DDE
TM5 251 5.66x66 μ receptor 6DDE PAF receptor 5ZKQ
TM5 252 5.67x67 μ receptor 6DDE - -
TM5 253 5.68x68 μ receptor 6DDE C5a1 receptor 5O9H
ICL3 254 - - - -
ICL3 255 - - - -
ICL3 256 - - - -
ICL3 257 - - - -
TM6 258 6.30x30 μ receptor 6DDE FFA1 receptor 5TZY
TM6 259 6.31x31 μ receptor 6DDE - -
TM6 260 6.32x32 μ receptor 6DDE PAR2 5NDD
TM6 261 6.33x33 μ receptor 6DDE 5-HT2B receptor 4IB4
TM6 262 6.34x34 μ receptor 6DDE - -
TM6 263 6.35x35 μ receptor 6DDE A2A receptor 4UHR
TM6 264 6.36x36 μ receptor 6DDE P2Y12 receptor 4PXZ
TM6 265 6.37x37 μ receptor 6DDE CCR5 5UIW
TM6 266 6.38x38 μ receptor 6DDE CCR9 5LWE
TM6 267 6.39x39 μ receptor 6DDE PAR1 3VW7
TM6 268 6.40x40 μ receptor 6DDE μ receptor 6DDE
TM6 269 6.41x41 μ receptor 6DDE μ receptor 6DDE
TM6 270 6.42x42 μ receptor 6DDE apelin receptor 5VBL
TM6 271 6.43x43 μ receptor 6DDE μ receptor 6DDE
TM6 272 6.44x44 μ receptor 6DDE μ receptor 6DDE
TM6 273 6.45x45 μ receptor 6DDE μ receptor 6DDE
TM6 274 6.46x46 μ receptor 6DDE NTS1 receptor 4XES
TM6 275 6.47x47 μ receptor 6DDE CCR5 5UIW
TM6 276 6.48x48 μ receptor 6DDE CCR9 5LWE
TM6 277 6.49x49 μ receptor 6DDE NTS1 receptor 4XES
TM6 278 6.50x50 μ receptor 6DDE μ receptor 6DDE
TM6 279 6.51x51 μ receptor 6DDE NTS1 receptor 4XES
TM6 280 6.52x52 μ receptor 6DDE PAR1 3VW7
TM6 281 6.53x53 μ receptor 6DDE FFA1 receptor 5KW2
TM6 282 6.54x54 μ receptor 6DDE PAF receptor 5ZKQ
TM6 283 6.55x55 μ receptor 6DDE μ receptor 6DDE
TM6 284 6.56x56 μ receptor 6DDE PAF receptor 5ZKQ
TM6 285 6.57x57 μ receptor 6DDE PAR1 3VW7
TM6 286 6.58x58 μ receptor 6DDE CCR9 5LWE
TM6 287 6.59x59 μ receptor 6DDE PAF receptor 5ZKQ
TM6 288 6.60x60 μ receptor 6DDE OX2 receptor 5WS3
TM6 289 6.61x61 μ receptor 6DDE - -
TM6 290 6.62x62 CCR9 5LWE - -
TM6 291 6.63x63 CCR9 5LWE - -
TM6 292 6.64x64 CCR9 5LWE - -
TM6 293 6.65x65 CCR9 5LWE - -
ECL3 294 - - - -
ECL3 295 CCR9 5LWE - -
ECL3 296 - - - -
TM7 297 7.24x23 CCR9 5LWE NTS1 receptor 4XES
TM7 298 7.25x24 CCR9 5LWE CCR9 5LWE
TM7 299 7.26x25 CCR9 5LWE CXCR4 3ODU
TM7 300 7.27x26 CCR9 5LWE NTS1 receptor 4XES
TM7 301 7.28x27 CCR9 5LWE CCR9 5LWE
TM7 302 7.29x28 CCR9 5LWE 5-HT2C receptor 6BQH
TM7 303 7.30x29 μ receptor 6DDE CCR2 5T1A
TM7 304 7.31x30 μ receptor 6DDE P2Y12 receptor 4NTJ
TM7 305 7.32x31 μ receptor 6DDE PAF receptor 5ZKQ
TM7 306 7.33x32 μ receptor 6DDE CCR9 5LWE
TM7 307 7.34x33 μ receptor 6DDE PAR1 3VW7
TM7 308 7.35x34 μ receptor 6DDE PAR1 3VW7
TM7 309 7.36x35 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM7 310 7.37x36 μ receptor 6DDE P2Y1 receptor 4XNW
TM7 311 7.38x37 μ receptor 6DDE P2Y1 receptor 4XNW
TM7 312 7.39x38 μ receptor 6DDE M3 receptor 4U15
TM7 313 7.40x39 μ receptor 6DDE US28 4XT1
TM7 314 7.41x40 μ receptor 6DDE μ receptor 6DDE
TM7 315 7.42x41 μ receptor 6DDE P2Y1 receptor 4XNW
TM7 316 7.43x42 μ receptor 6DDE - -
TM7 317 7.44x43 μ receptor 6DDE 5-HT2B receptor 4IB4
TM7 318 7.45x45 μ receptor 6DDE - -
TM7 319 7.46x46 μ receptor 6DDE PAR1 3VW7
TM7 320 7.47x47 μ receptor 6DDE μ receptor 6DDE
TM7 321 7.48x48 μ receptor 6DDE P2Y1 receptor 4XNW
TM7 322 7.49x49 μ receptor 6DDE μ receptor 6DDE
TM7 323 7.50x50 μ receptor 6DDE μ receptor 6DDE
TM7 324 7.51x51 μ receptor 6DDE PAR2 5NDD
TM7 325 7.52x52 μ receptor 6DDE μ receptor 6DDE
TM7 326 7.53x53 μ receptor 6DDE μ receptor 6DDE
TM7 327 7.54x54 μ receptor 6DDE μ receptor 6DDE
TM7 328 7.55x55 CCR9 5LWE CCR9 5LWE
TM7 329 7.56x56 CCR9 5LWE - -
H8 330 8.47x47 CCR9 5LWE CCR9 5LWE
H8 331 8.48x48 CCR9 5LWE - -
H8 332 8.49x49 CCR9 5LWE CCR2 5T1A
H8 333 8.50x50 CCR9 5LWE PAR2 5NDD
H8 334 8.51x51 CCR9 5LWE PAR2 5NDD
H8 335 8.52x52 CCR9 5LWE P2Y12 receptor 4NTJ
H8 336 8.53x53 CCR9 5LWE CCR9 5LWE
H8 337 8.54x54 CCR9 5LWE CCR9 5LWE
H8 338 8.55x55 CCR9 5LWE - -
H8 339 8.56x56 CCR9 5LWE A2A receptor 4UHR
H8 340 8.57x57 CCR9 5LWE 5-HT1B receptor 4IAQ
H8 341 8.58x58 CCR9 5LWE CCR5 5UIW
H8 342 8.59x59 CCR9 5LWE CCR9 5LWE
H8 343 8.60x60 CCR9 5LWE A1 receptor 5UEN
H8 344 8.61x61 CCR9 5LWE CCR9 5LWE
H8 345 8.62x62 CCR9 5LWE CCR9 5LWE
H8 346 8.63x63 CCR9 5LWE - -
H8 347 8.64x64 CCR9 5LWE - -
H8 348 8.65x65 CCR9 5LWE CCR9 5LWE
H8 349 8.66x66 CCR9 5LWE CCR9 5LWE
H8 350 8.67x67 CCR9 5LWE A2A receptor 2YDV
C-term 351 - - - -
C-term 352 - - - -
C-term 353 - - - -
C-term 354 - - - -
C-term 355 - - - -