CCR9 homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Active (Δ distance (Å): 10.22 docs)

VERSION

2018-07-10

MAIN TEMPLATE

μ receptor (sequence similarity: 47%) PDB: 5C1M

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 73.1 18.8 8.1
Side-chains 19.4 67.0 13.6

Number of backbone templates: 4
Number of rotamer templates: 28

NGL is a WebGL based 3D viewer powered by MMTF.

5LWE
5C1M
4ZUD
5UIW
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 38 CCR9 5LWE CCR9 5LWE
N-term 39 CCR9 5LWE CCR9 5LWE
N-term 40 CCR9 5LWE CCR9 5LWE
N-term 41 CCR9 5LWE CCR9 5LWE
N-term 42 CCR9 5LWE CCR9 5LWE
TM1 43 1.27x27 CCR9 5LWE CCR9 5LWE
TM1 44 1.28x28 CCR9 5LWE CCR9 5LWE
TM1 45 1.29x29 μ receptor 5C1M CCR9 5LWE
TM1 46 1.30x30 μ receptor 5C1M PAF receptor 5ZKP
TM1 47 1.31x31 μ receptor 5C1M CCR9 5LWE
TM1 48 1.32x32 μ receptor 5C1M CCR9 5LWE
TM1 49 1.33x33 μ receptor 5C1M CCR9 5LWE
TM1 50 1.34x34 μ receptor 5C1M M2 receptor 4MQT
TM1 51 1.35x35 μ receptor 5C1M Rhodopsin 5DYS
TM1 52 1.36x36 μ receptor 5C1M AT2 receptor 5UNG
TM1 53 1.37x37 μ receptor 5C1M CCR9 5LWE
TM1 54 1.38x38 μ receptor 5C1M μ receptor 5C1M
TM1 55 1.39x39 μ receptor 5C1M μ receptor 5C1M
TM1 56 1.40x40 μ receptor 5C1M CCR9 5LWE
TM1 57 1.41x41 μ receptor 5C1M 5-HT2B receptor 5TUD
TM1 58 1.42x42 μ receptor 5C1M μ receptor 5C1M
TM1 59 1.43x43 μ receptor 5C1M AT2 receptor 5UNG
TM1 60 1.44x44 μ receptor 5C1M 5-HT2B receptor 5TUD
TM1 61 1.45x45 μ receptor 5C1M μ receptor 5C1M
TM1 62 1.46x46 μ receptor 5C1M μ receptor 5C1M
TM1 63 1.47x47 μ receptor 5C1M CCR9 5LWE
TM1 64 1.48x48 μ receptor 5C1M AT2 receptor 5UNG
TM1 65 1.49x49 μ receptor 5C1M μ receptor 5C1M
TM1 66 1.50x50 μ receptor 5C1M μ receptor 5C1M
TM1 67 1.51x51 μ receptor 5C1M κ receptor 6B73
TM1 68 1.52x52 μ receptor 5C1M μ receptor 5C1M
TM1 69 1.53x53 μ receptor 5C1M μ receptor 5C1M
TM1 70 1.54x54 μ receptor 5C1M US28 4XT1
TM1 71 1.55x55 μ receptor 5C1M 5-HT2B receptor 5TUD
TM1 72 1.56x56 μ receptor 5C1M μ receptor 5C1M
TM1 73 1.57x57 μ receptor 5C1M CCR9 5LWE
TM1 74 1.58x58 μ receptor 5C1M A2A receptor 5G53
TM1 75 1.59x59 μ receptor 5C1M CCR9 5LWE
TM1 76 1.60x60 μ receptor 5C1M CCR9 5LWE
ICL1 77 12.48x48 - - - -
ICL1 78 12.49x49 AT1 receptor 4ZUD β2-adrenoceptor 4LDE
ICL1 79 12.50x50 AT1 receptor 4ZUD - -
ICL1 80 12.51x51 - - - -
TM2 81 2.37x37 μ receptor 5C1M μ receptor 5C1M
TM2 82 2.38x38 μ receptor 5C1M CCR5 5UIW
TM2 83 2.39x39 μ receptor 5C1M μ receptor 5C1M
TM2 84 2.40x40 μ receptor 5C1M US28 4XT1
TM2 85 2.41x41 μ receptor 5C1M CCR9 5LWE
TM2 86 2.42x42 μ receptor 5C1M PAF receptor 5ZKP
TM2 87 2.43x43 μ receptor 5C1M 5-HT2B receptor 5TUD
TM2 88 2.44x44 μ receptor 5C1M Rhodopsin 5DYS
TM2 89 2.45x45 μ receptor 5C1M μ receptor 5C1M
TM2 90 2.46x46 μ receptor 5C1M μ receptor 5C1M
TM2 91 2.47x47 μ receptor 5C1M μ receptor 5C1M
TM2 92 2.48x48 μ receptor 5C1M 5-HT2C receptor 6BQG
TM2 93 2.49x49 μ receptor 5C1M μ receptor 5C1M
TM2 94 2.50x50 μ receptor 5C1M μ receptor 5C1M
TM2 95 2.51x51 μ receptor 5C1M AT2 receptor 5UNG
TM2 96 2.52x52 μ receptor 5C1M μ receptor 5C1M
TM2 97 2.53x53 μ receptor 5C1M US28 4XT1
TM2 98 2.54x54 μ receptor 5C1M AT2 receptor 5UNG
TM2 99 2.55x55 μ receptor 5C1M M2 receptor 4MQT
TM2 100 2.56x56 μ receptor 5C1M μ receptor 5C1M
TM2 101 2.57x57 μ receptor 5C1M μ receptor 5C1M
TM2 102 2.58x58 μ receptor 5C1M μ receptor 5C1M
TM2 103 2.59x59 μ receptor 5C1M μ receptor 5C1M
TM2 104 2.60x60 μ receptor 5C1M AT2 receptor 5UNG
TM2 105 2.61x61 μ receptor 5C1M AT2 receptor 5UNG
TM2 106 2.62x62 μ receptor 5C1M CB1 receptor 5XRA
TM2 107 2.63x63 μ receptor 5C1M 5-HT2C receptor 6BQG
TM2 108 2.64x64 μ receptor 5C1M CCR9 5LWE
TM2 109 2.65x65 μ receptor 5C1M CCR5 5UIW
TM2 110 2.66x66 μ receptor 5C1M US28 4XT1
ECL1 111 23.49x49 - - - -
ECL1 112 23.50x50 CCR5 5UIW CCR5 5UIW
ECL1 113 23.51x51 CCR5 5UIW S1P1 receptor 3V2Y
ECL1 114 23.52x52 - - - -
TM3 115 3.21x21 μ receptor 5C1M - -
TM3 116 3.22x22 μ receptor 5C1M apelin receptor 5VBL
TM3 117 3.23x23 μ receptor 5C1M PAF receptor 5ZKP
TM3 118 3.24x24 μ receptor 5C1M AT2 receptor 5UNG
TM3 119 3.25x25 μ receptor 5C1M μ receptor 5C1M
TM3 120 3.26x26 μ receptor 5C1M μ receptor 5C1M
TM3 121 3.27x27 μ receptor 5C1M AT2 receptor 5UNG
TM3 122 3.28x28 μ receptor 5C1M μ receptor 5C1M
TM3 123 3.29x29 μ receptor 5C1M CCR9 5LWE
TM3 124 3.30x30 μ receptor 5C1M μ receptor 5C1M
TM3 125 3.31x31 μ receptor 5C1M CCR9 5LWE
TM3 126 3.32x32 μ receptor 5C1M CCR9 5LWE
TM3 127 3.33x33 μ receptor 5C1M CCR9 5LWE
TM3 128 3.34x34 μ receptor 5C1M CCR9 5LWE
TM3 129 3.35x35 μ receptor 5C1M μ receptor 5C1M
TM3 130 3.36x36 μ receptor 5C1M CB1 receptor 5XRA
TM3 131 3.37x37 μ receptor 5C1M LPA6 receptor 5XSZ
TM3 132 3.38x38 μ receptor 5C1M A2A receptor 5G53
TM3 133 3.39x39 μ receptor 5C1M CCR9 5LWE
TM3 134 3.40x40 μ receptor 5C1M PAF receptor 5ZKP
TM3 135 3.41x41 μ receptor 5C1M LPA6 receptor 5XSZ
TM3 136 3.42x42 μ receptor 5C1M CCR9 5LWE
TM3 137 3.43x43 μ receptor 5C1M AT2 receptor 5UNG
TM3 138 3.44x44 μ receptor 5C1M CCR9 5LWE
TM3 139 3.45x45 μ receptor 5C1M AT2 receptor 5UNG
TM3 140 3.46x46 μ receptor 5C1M US28 4XT1
TM3 141 3.47x47 μ receptor 5C1M μ receptor 5C1M
TM3 142 3.48x48 μ receptor 5C1M μ receptor 5C1M
TM3 143 3.49x49 μ receptor 5C1M μ receptor 5C1M
TM3 144 3.50x50 μ receptor 5C1M μ receptor 5C1M
TM3 145 3.51x51 μ receptor 5C1M μ receptor 5C1M
TM3 146 3.52x52 μ receptor 5C1M μ receptor 5C1M
TM3 147 3.53x53 μ receptor 5C1M μ receptor 5C1M
TM3 148 3.54x54 μ receptor 5C1M US28 4XT1
TM3 149 3.55x55 μ receptor 5C1M CCR9 5LWE
TM3 150 3.56x56 μ receptor 5C1M CCR9 5LWE
ICL2 151 34.50x50 - - - -
ICL2 152 34.51x51 CCR9 5LWE CCR9 5LWE
ICL2 153 34.52x52 CCR9 5LWE CCR9 5LWE
ICL2 154 34.53x53 CCR9 5LWE CCR9 5LWE
ICL2 155 34.54x54 CCR9 5LWE CCR9 5LWE
ICL2 156 34.55x55 CCR9 5LWE CCR9 5LWE
ICL2 157 34.56x56 - - - -
TM4 158 4.35x35 CCR9 5LWE CCR9 5LWE
TM4 159 4.36x36 CCR9 5LWE CCR9 5LWE
TM4 160 4.37x37 CCR9 5LWE CCR9 5LWE
TM4 161 4.38x38 μ receptor 5C1M FFA1 receptor 5TZY
TM4 162 4.39x39 μ receptor 5C1M CCR9 5LWE
TM4 163 4.40x40 μ receptor 5C1M κ receptor 6B73
TM4 164 4.41x41 μ receptor 5C1M CCR9 5LWE
TM4 165 4.42x42 μ receptor 5C1M CCR9 5LWE
TM4 166 4.43x43 μ receptor 5C1M μ receptor 5C1M
TM4 167 4.44x44 μ receptor 5C1M 5-HT2C receptor 6BQG
TM4 168 4.45x45 μ receptor 5C1M μ receptor 5C1M
TM4 169 4.46x46 μ receptor 5C1M LPA6 receptor 5XSZ
TM4 170 4.47x47 μ receptor 5C1M CCR9 5LWE
TM4 171 4.48x48 μ receptor 5C1M CCR9 5LWE
TM4 172 4.49x49 μ receptor 5C1M κ receptor 6B73
TM4 173 4.50x50 μ receptor 5C1M μ receptor 5C1M
TM4 174 4.51x51 μ receptor 5C1M LPA6 receptor 5XSZ
TM4 175 4.52x52 μ receptor 5C1M μ receptor 5C1M
TM4 176 4.53x53 μ receptor 5C1M AT2 receptor 5UNG
TM4 177 4.54x54 μ receptor 5C1M NTS1 receptor 5T04
TM4 178 4.55x55 μ receptor 5C1M μ receptor 5C1M
TM4 179 4.56x56 μ receptor 5C1M M2 receptor 4MQT
TM4 180 4.57x57 CCR9 5LWE CCR9 5LWE
TM4 181 4.58x59 CCR9 5LWE US28 4XT1
TM4 182 4.59x60 μ receptor 5C1M AT2 receptor 5UNG
TM4 183 4.60x61 μ receptor 5C1M CCR9 5LWE
TM4 184 4.61x62 μ receptor 5C1M PAF receptor 5ZKP
TM4 185 4.62x63 μ receptor 5C1M κ receptor 6B73
TM4 186 4.63x64 μ receptor 5C1M - -
TM4 187 4.64x65 CCR5 5UIW - -
ECL2 188 μ receptor 5C1M - -
ECL2 189 μ receptor 5C1M - -
ECL2 190 μ receptor 5C1M μ receptor 5C1M
ECL2 191 μ receptor 5C1M - -
ECL2 192 μ receptor 5C1M - -
ECL2 193 μ receptor 5C1M - -
ECL2 194 μ receptor 5C1M μ receptor 5C1M
ECL2 195 μ receptor 5C1M - -
ECL2 196 μ receptor 5C1M - -
ECL2 197 μ receptor 5C1M - -
ECL2 198 45.50x50 μ receptor 5C1M μ receptor 5C1M
ECL2 199 45.51x51 μ receptor 5C1M μ receptor 5C1M
ECL2 200 45.52x52 μ receptor 5C1M AT2 receptor 5UNG
ECL2 201 - - - -
ECL2 202 - - - -
ECL2 203 - - - -
ECL2 204 - - - -
ECL2 205 - - - -
ECL2 206 - - - -
ECL2 207 - - - -
ECL2 208 - - - -
TM5 209 5.33x34 μ receptor 5C1M - -
TM5 210 5.34x35 μ receptor 5C1M AT1 receptor 4ZUD
TM5 211 5.35x36 μ receptor 5C1M CCR5 5UIW
TM5 212 5.36x37 μ receptor 5C1M LPA6 receptor 5XSZ
TM5 213 5.37x38 μ receptor 5C1M β2-adrenoceptor 3SN6
TM5 214 5.38x39 μ receptor 5C1M LPA6 receptor 5XSZ
TM5 215 5.39x40 μ receptor 5C1M CB1 receptor 5XRA
TM5 216 5.40x41 μ receptor 5C1M Y1 receptor 5ZBH
TM5 217 5.41x42 μ receptor 5C1M Y1 receptor 5ZBH
TM5 218 5.42x43 μ receptor 5C1M AT2 receptor 5UNG
TM5 219 5.43x44 μ receptor 5C1M PAF receptor 5ZKP
TM5 220 5.44x45 μ receptor 5C1M μ receptor 5C1M
TM5 221 5.45x46 μ receptor 5C1M AT2 receptor 5UNG
TM5 222 5.46x461 μ receptor 5C1M AT2 receptor 5UNG
TM5 223 5.47x47 μ receptor 5C1M μ receptor 5C1M
TM5 224 5.48x48 μ receptor 5C1M PAF receptor 5ZKP
TM5 225 5.49x49 μ receptor 5C1M PAF receptor 5ZKP
TM5 226 5.50x50 μ receptor 5C1M μ receptor 5C1M
TM5 227 5.51x51 μ receptor 5C1M PAF receptor 5ZKP
TM5 228 5.52x52 μ receptor 5C1M β2-adrenoceptor 3SN6
TM5 229 5.53x53 μ receptor 5C1M US28 4XT1
TM5 230 5.54x54 μ receptor 5C1M 5-HT2B receptor 5TUD
TM5 231 5.55x55 μ receptor 5C1M AT2 receptor 5UNG
TM5 232 5.56x56 μ receptor 5C1M - -
TM5 233 5.57x57 μ receptor 5C1M μ receptor 5C1M
TM5 234 5.58x58 μ receptor 5C1M μ receptor 5C1M
TM5 235 5.59x59 μ receptor 5C1M κ receptor 6B73
TM5 236 5.60x60 μ receptor 5C1M CXCR4 3ODU
TM5 237 5.61x61 μ receptor 5C1M AT2 receptor 5UNG
TM5 238 5.62x62 μ receptor 5C1M μ receptor 5C1M
TM5 239 5.63x63 μ receptor 5C1M 5-HT2B receptor 5TUD
TM5 240 5.64x64 μ receptor 5C1M LPA6 receptor 5XSZ
TM5 241 5.65x65 μ receptor 5C1M μ receptor 5C1M
TM5 242 5.66x66 μ receptor 5C1M P2Y1 receptor 4XNW
TM5 243 5.67x67 μ receptor 5C1M - -
TM5 244 5.68x68 μ receptor 5C1M C5a1 receptor 5O9H
ICL3 245 - - - -
ICL3 246 - - - -
ICL3 247 - - - -
ICL3 248 - - - -
TM6 249 6.30x30 μ receptor 5C1M US28 4XT1
TM6 250 6.31x31 μ receptor 5C1M β2-adrenoceptor 4LDE
TM6 251 6.32x32 μ receptor 5C1M LPA6 receptor 5XSZ
TM6 252 6.33x33 μ receptor 5C1M 5-HT2B receptor 5TUD
TM6 253 6.34x34 μ receptor 5C1M AT2 receptor 5UNG
TM6 254 6.35x35 μ receptor 5C1M AT2 receptor 5UNG
TM6 255 6.36x36 μ receptor 5C1M US28 4XT1
TM6 256 6.37x37 μ receptor 5C1M CCR9 5LWE
TM6 257 6.38x38 μ receptor 5C1M US28 4XT1
TM6 258 6.39x39 μ receptor 5C1M CCR9 5LWE
TM6 259 6.40x40 μ receptor 5C1M μ receptor 5C1M
TM6 260 6.41x41 μ receptor 5C1M LPA6 receptor 5XSZ
TM6 261 6.42x42 μ receptor 5C1M CCR9 5LWE
TM6 262 6.43x43 μ receptor 5C1M μ receptor 5C1M
TM6 263 6.44x44 μ receptor 5C1M μ receptor 5C1M
TM6 264 6.45x45 μ receptor 5C1M κ receptor 6B73
TM6 265 6.46x46 μ receptor 5C1M 5-HT2B receptor 5TUD
TM6 266 6.47x47 μ receptor 5C1M A1 receptor 6D9H
TM6 267 6.48x48 μ receptor 5C1M CCR9 5LWE
TM6 268 6.49x49 μ receptor 5C1M CCR9 5LWE
TM6 269 6.50x50 μ receptor 5C1M μ receptor 5C1M
TM6 270 6.51x51 μ receptor 5C1M US28 4XT1
TM6 271 6.52x52 μ receptor 5C1M LPA6 receptor 5XSZ
TM6 272 6.53x53 μ receptor 5C1M CCR9 5LWE
TM6 273 6.54x54 μ receptor 5C1M A2A receptor 5G53
TM6 274 6.55x55 μ receptor 5C1M US28 4XT1
TM6 275 6.56x56 μ receptor 5C1M κ receptor 6B73
TM6 276 6.57x57 μ receptor 5C1M US28 4XT1
TM6 277 6.58x58 μ receptor 5C1M CCR9 5LWE
TM6 278 6.59x59 μ receptor 5C1M US28 4XT1
TM6 279 6.60x60 μ receptor 5C1M β2-adrenoceptor 3SN6
TM6 280 6.61x61 μ receptor 5C1M - -
TM6 281 6.62x62 CCR9 5LWE CCR9 5LWE
TM6 282 6.63x63 CCR9 5LWE CCR9 5LWE
TM6 283 6.64x64 CCR9 5LWE CCR9 5LWE
TM6 284 6.65x65 CCR9 5LWE CCR9 5LWE
ECL3 285 - - - -
ECL3 286 CCR9 5LWE CCR9 5LWE
ECL3 287 - - - -
TM7 288 7.24x23 CCR9 5LWE CCR9 5LWE
TM7 289 7.25x24 CCR9 5LWE CCR9 5LWE
TM7 290 7.26x25 CCR9 5LWE CCR9 5LWE
TM7 291 7.27x26 CCR9 5LWE CCR9 5LWE
TM7 292 7.28x27 μ receptor 5C1M NOP receptor 5DHG
TM7 293 7.29x28 μ receptor 5C1M μ receptor 5C1M
TM7 294 7.30x29 μ receptor 5C1M Y1 receptor 5ZBH
TM7 295 7.31x30 μ receptor 5C1M AT2 receptor 5UNG
TM7 296 7.32x31 μ receptor 5C1M AT2 receptor 5UNG
TM7 297 7.33x32 μ receptor 5C1M Rhodopsin 5DYS
TM7 298 7.34x33 μ receptor 5C1M CCR9 5LWE
TM7 299 7.35x34 μ receptor 5C1M 5-HT1B receptor 6G79
TM7 300 7.36x35 μ receptor 5C1M PAF receptor 5ZKP
TM7 301 7.37x36 μ receptor 5C1M PAF receptor 5ZKP
TM7 302 7.38x37 μ receptor 5C1M US28 4XT1
TM7 303 7.39x38 μ receptor 5C1M CCR9 5LWE
TM7 304 7.40x39 μ receptor 5C1M CCR5 5UIW
TM7 305 7.41x40 μ receptor 5C1M LPA6 receptor 5XSZ
TM7 306 7.42x41 μ receptor 5C1M US28 4XT1
TM7 307 7.43x42 μ receptor 5C1M AT2 receptor 5UNG
TM7 308 7.44x43 μ receptor 5C1M CCR9 5LWE
TM7 309 7.45x45 μ receptor 5C1M US28 4XT1
TM7 310 7.46x46 μ receptor 5C1M μ receptor 5C1M
TM7 311 7.47x47 μ receptor 5C1M μ receptor 5C1M
TM7 312 7.48x48 μ receptor 5C1M μ receptor 5C1M
TM7 313 7.49x49 μ receptor 5C1M μ receptor 5C1M
TM7 314 7.50x50 μ receptor 5C1M μ receptor 5C1M
TM7 315 7.51x51 CCR9 5LWE CCR9 5LWE
TM7 316 7.52x52 CCR9 5LWE CCR9 5LWE
TM7 317 7.53x53 CCR9 5LWE CCR9 5LWE
TM7 318 7.54x54 CCR9 5LWE CCR9 5LWE
TM7 319 7.55x55 CCR9 5LWE CCR9 5LWE
TM7 320 7.56x56 CCR9 5LWE CCR9 5LWE
H8 321 8.47x47 CCR9 5LWE CCR9 5LWE
H8 322 8.48x48 CCR9 5LWE CCR9 5LWE
H8 323 8.49x49 CCR9 5LWE CCR9 5LWE
H8 324 8.50x50 CCR9 5LWE CCR9 5LWE
H8 325 8.51x51 CCR9 5LWE CCR9 5LWE
H8 326 8.52x52 CCR9 5LWE CCR9 5LWE
H8 327 8.53x53 CCR9 5LWE CCR9 5LWE
H8 328 8.54x54 CCR9 5LWE CCR9 5LWE
H8 329 8.55x55 CCR9 5LWE CCR9 5LWE
H8 330 8.56x56 CCR9 5LWE CCR9 5LWE
H8 331 8.57x57 CCR9 5LWE CCR9 5LWE
H8 332 8.58x58 CCR9 5LWE CCR9 5LWE
H8 333 8.59x59 CCR9 5LWE CCR9 5LWE
H8 334 8.60x60 CCR9 5LWE CCR9 5LWE
H8 335 8.61x61 CCR9 5LWE CCR9 5LWE
H8 336 8.62x62 CCR9 5LWE CCR9 5LWE
H8 337 8.63x63 CCR9 5LWE - -
H8 338 8.64x64 CCR9 5LWE CCR9 5LWE
H8 339 8.65x65 CCR9 5LWE CCR9 5LWE
H8 340 8.66x66 CCR9 5LWE CCR9 5LWE
H8 341 8.67x67 CCR9 5LWE CCR9 5LWE
C-term 342 - - - -
C-term 343 - - - -
C-term 344 - - - -
C-term 345 - - - -
C-term 346 - - - -