chemerin receptor homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Intermediate (Δ distance (Å): 7.26 docs)

VERSION

2018-07-10

MAIN TEMPLATE

μ receptor (sequence similarity: 49%) PDB: 6DDE

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 72.3 14.3 13.4
Side-chains 21.2 54.4 24.4

Number of backbone templates: 6
Number of rotamer templates: 32

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4ZUD
6DDE
5C1M
4DKL
5O9H
5VBL
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 33 AT1 receptor 4ZUD AT1 receptor 4ZUD
N-term 34 AT1 receptor 4ZUD AT1 receptor 4ZUD
N-term 35 AT1 receptor 4ZUD AT1 receptor 4ZUD
N-term 36 AT1 receptor 4ZUD AT1 receptor 4ZUD
N-term 37 AT1 receptor 4ZUD AT1 receptor 4ZUD
TM1 38 1.30x30 AT1 receptor 4ZUD C5a1 receptor 5O9H
TM1 39 1.31x31 μ receptor 6DDE PAR2 5NDD
TM1 40 1.32x32 μ receptor 6DDE - -
TM1 41 1.33x33 μ receptor 6DDE C5a1 receptor 5O9H
TM1 42 1.34x34 μ receptor 6DDE PAR2 5NDD
TM1 43 1.35x35 μ receptor 6DDE PAR2 5NDD
TM1 44 1.36x36 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM1 45 1.37x37 μ receptor 6DDE C5a1 receptor 5O9H
TM1 46 1.38x38 μ receptor 6DDE PAR2 5NDD
TM1 47 1.39x39 μ receptor 6DDE μ receptor 6DDE
TM1 48 1.40x40 μ receptor 6DDE μ receptor 6DDE
TM1 49 1.41x41 μ receptor 6DDE μ receptor 6DDE
TM1 50 1.42x42 μ receptor 6DDE μ receptor 6DDE
TM1 51 1.43x43 μ receptor 6DDE μ receptor 5C1M
TM1 52 1.44x44 μ receptor 6DDE P2Y12 receptor 4NTJ
TM1 53 1.45x45 μ receptor 6DDE PAF receptor 5ZKQ
TM1 54 1.46x46 μ receptor 6DDE μ receptor 6DDE
TM1 55 1.47x47 μ receptor 6DDE 5-HT2B receptor 4IB4
TM1 56 1.48x48 μ receptor 6DDE P2Y1 receptor 4XNW
TM1 57 1.49x49 μ receptor 6DDE μ receptor 6DDE
TM1 58 1.50x50 μ receptor 6DDE μ receptor 6DDE
TM1 59 1.51x51 μ receptor 6DDE PAR2 5NDD
TM1 60 1.52x52 μ receptor 6DDE μ receptor 6DDE
TM1 61 1.53x53 μ receptor 6DDE μ receptor 6DDE
TM1 62 1.54x54 μ receptor 6DDE P2Y1 receptor 4XNW
TM1 63 1.55x55 μ receptor 6DDE AT1 receptor 4ZUD
TM1 64 1.56x56 μ receptor 6DDE P2Y12 receptor 4NTJ
TM1 65 1.57x57 μ receptor 6DDE FFA1 receptor 5TZY
TM1 66 1.58x58 μ receptor 6DDE FFA1 receptor 5TZY
TM1 67 1.59x59 μ receptor 6DDE PAR2 5NDD
TM1 68 1.60x60 μ receptor 6DDE PAR1 3VW7
ICL1 69 - - - -
ICL1 70 C5a1 receptor 5O9H C5a1 receptor 5O9H
ICL1 71 - - - -
TM2 72 2.37x37 AT1 receptor 4ZUD AT1 receptor 4ZUD
TM2 73 2.38x38 μ receptor 6DDE A2A receptor 4UHR
TM2 74 2.39x39 μ receptor 6DDE C5a1 receptor 5O9H
TM2 75 2.40x40 μ receptor 6DDE - -
TM2 76 2.41x41 μ receptor 6DDE P2Y1 receptor 4XNW
TM2 77 2.42x42 μ receptor 6DDE C5a1 receptor 5O9H
TM2 78 2.43x43 μ receptor 6DDE C5a1 receptor 5O9H
TM2 79 2.44x44 μ receptor 6DDE PAR1 3VW7
TM2 80 2.45x45 μ receptor 6DDE μ receptor 6DDE
TM2 81 2.46x46 μ receptor 6DDE μ receptor 6DDE
TM2 82 2.47x47 μ receptor 6DDE μ receptor 6DDE
TM2 83 2.48x48 μ receptor 6DDE 5-HT2B receptor 4IB4
TM2 84 2.49x49 μ receptor 6DDE μ receptor 6DDE
TM2 85 2.50x50 μ receptor 6DDE μ receptor 6DDE
TM2 86 2.51x51 μ receptor 6DDE P2Y1 receptor 4XNW
TM2 87 2.52x52 μ receptor 6DDE μ receptor 6DDE
TM2 88 2.53x53 μ receptor 6DDE PAR1 3VW7
TM2 89 2.54x54 μ receptor 6DDE - -
TM2 90 2.55x55 μ receptor 6DDE A2A receptor 4UHR
TM2 91 2.56x56 μ receptor 6DDE - -
TM2 92 2.57x57 μ receptor 6DDE μ receptor 6DDE
TM2 93 2.58x58 μ receptor 6DDE μ receptor 6DDE
TM2 94 2.59x59 μ receptor 6DDE 5-HT2B receptor 4IB4
TM2 95 2.60x60 μ receptor 6DDE - -
TM2 96 2.61x61 μ receptor 6DDE PAR2 5NDD
TM2 97 2.62x62 μ receptor 6DDE A2A receptor 3QAK
TM2 98 2.63x63 μ receptor 6DDE PAR2 5NDD
TM2 99 2.64x64 μ receptor 6DDE FFA1 receptor 5TZY
TM2 100 2.65x65 μ receptor 6DDE P2Y12 receptor 4NTJ
TM2 101 2.66x66 μ receptor 6DDE AT1 receptor 4ZUD
ECL1 102 - - - -
ECL1 103 AT1 receptor 4ZUD AT1 receptor 4ZUD
ECL1 104 23.49x49 AT1 receptor 4ZUD C5a1 receptor 5O9H
ECL1 105 23.50x50 AT1 receptor 4ZUD AT1 receptor 4ZUD
ECL1 106 23.51x51 AT1 receptor 4ZUD CCR2 5T1A
ECL1 107 23.52x52 - - - -
TM3 108 3.21x21 μ receptor 6DDE μ receptor 6DDE
TM3 109 3.22x22 μ receptor 6DDE P2Y12 receptor 4NTJ
TM3 110 3.23x23 μ receptor 6DDE PAR2 5NDD
TM3 111 3.24x24 μ receptor 6DDE P2Y1 receptor 4XNW
TM3 112 3.25x25 μ receptor 6DDE μ receptor 6DDE
TM3 113 3.26x26 μ receptor 6DDE μ receptor 6DDE
TM3 114 3.27x27 μ receptor 6DDE μ receptor 6DDE
TM3 115 3.28x28 μ receptor 6DDE apelin receptor 5VBL
TM3 116 3.29x29 μ receptor 6DDE CCR9 5LWE
TM3 117 3.30x30 μ receptor 6DDE P2Y1 receptor 4XNW
TM3 118 3.31x31 μ receptor 6DDE PAF receptor 5ZKQ
TM3 119 3.32x32 μ receptor 6DDE AT2 receptor 5UNG
TM3 120 3.33x33 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM3 121 3.34x34 μ receptor 6DDE - -
TM3 122 3.35x35 μ receptor 6DDE μ receptor 6DDE
TM3 123 3.36x36 μ receptor 6DDE μ receptor 6DDE
TM3 124 3.37x37 μ receptor 6DDE μ receptor 6DDE
TM3 125 3.38x38 μ receptor 6DDE μ receptor 6DDE
TM3 126 3.39x39 μ receptor 6DDE μ receptor 6DDE
TM3 127 3.40x40 μ receptor 6DDE PAF receptor 5ZKQ
TM3 128 3.41x41 μ receptor 6DDE μ receptor 6DDE
TM3 129 3.42x42 μ receptor 6DDE PAR1 3VW7
TM3 130 3.43x43 μ receptor 6DDE μ receptor 6DDE
TM3 131 3.44x44 μ receptor 6DDE PAR2 5NDD
TM3 132 3.45x45 μ receptor 6DDE M2 receptor 3UON
TM3 133 3.46x46 μ receptor 6DDE P2Y1 receptor 4XNW
TM3 134 3.47x47 μ receptor 6DDE μ receptor 6DDE
TM3 135 3.48x48 μ receptor 6DDE - -
TM3 136 3.49x49 μ receptor 6DDE μ receptor 6DDE
TM3 137 3.50x50 μ receptor 6DDE μ receptor 6DDE
TM3 138 3.51x51 μ receptor 6DDE - -
TM3 139 3.52x52 μ receptor 6DDE μ receptor 6DDE
TM3 140 3.53x53 μ receptor 6DDE AT2 receptor 5UNG
TM3 141 3.54x54 μ receptor 6DDE μ receptor 6DDE
TM3 142 3.55x55 μ receptor 6DDE - -
TM3 143 3.56x56 μ receptor 6DDE - -
ICL2 144 34.50x50 - - - -
ICL2 145 34.51x51 C5a1 receptor 5O9H μ receptor 6DDE
ICL2 146 34.52x52 C5a1 receptor 5O9H C5a1 receptor 5O9H
ICL2 147 34.53x53 C5a1 receptor 5O9H P2Y1 receptor 4XNW
ICL2 148 34.54x54 C5a1 receptor 5O9H C5a1 receptor 5O9H
ICL2 149 34.55x55 C5a1 receptor 5O9H C5a1 receptor 6C1R
ICL2 150 34.56x56 C5a1 receptor 5O9H - -
ICL2 151 34.57x57 - - - -
TM4 152 4.38x38 μ receptor 6DDE NTS1 receptor 4XES
TM4 153 4.39x39 μ receptor 6DDE CCR5 5UIW
TM4 154 4.40x40 μ receptor 6DDE μ receptor 6DDE
TM4 155 4.41x41 μ receptor 6DDE C5a1 receptor 5O9H
TM4 156 4.42x42 μ receptor 6DDE μ receptor 6DDE
TM4 157 4.43x43 μ receptor 6DDE Y1 receptor 5ZBH
TM4 158 4.44x44 μ receptor 6DDE CCR9 5LWE
TM4 159 4.45x45 μ receptor 6DDE C5a1 receptor 6C1R
TM4 160 4.46x46 μ receptor 6DDE PAR1 3VW7
TM4 161 4.47x47 μ receptor 6DDE - -
TM4 162 4.48x48 μ receptor 6DDE P2Y12 receptor 4NTJ
TM4 163 4.49x49 μ receptor 6DDE PAR2 5NDD
TM4 164 4.50x50 μ receptor 6DDE μ receptor 6DDE
TM4 165 4.51x51 μ receptor 6DDE PAF receptor 5ZKQ
TM4 166 4.52x52 μ receptor 6DDE μ receptor 6DDE
TM4 167 4.53x53 μ receptor 6DDE PAR1 3VW7
TM4 168 4.54x54 μ receptor 6DDE P2Y12 receptor 4NTJ
TM4 169 4.55x55 μ receptor 6DDE CCR5 5UIW
TM4 170 4.56x56 μ receptor 6DDE P2Y12 receptor 4NTJ
TM4 171 4.57x57 AT1 receptor 4ZUD P2Y12 receptor 4NTJ
TM4 172 4.58x59 AT1 receptor 4ZUD κ receptor 4DJH
TM4 173 4.59x60 μ receptor 6DDE PAR2 5NDD
TM4 174 4.60x61 μ receptor 6DDE C5a1 receptor 5O9H
TM4 175 4.61x62 μ receptor 6DDE PAR1 3VW7
TM4 176 4.62x63 AT1 receptor 4ZUD PAR2 5NDD
TM4 177 4.63x64 AT1 receptor 4ZUD CXCR4 3ODU
TM4 178 4.64x65 AT1 receptor 4ZUD AT1 receptor 4ZUD
ECL2 179 μ receptor 6DDE - -
ECL2 180 μ receptor 6DDE μ receptor 6DDE
ECL2 181 μ receptor 6DDE - -
ECL2 182 μ receptor 6DDE - -
ECL2 183 μ receptor 6DDE - -
ECL2 184 μ receptor 6DDE - -
ECL2 185 μ receptor 6DDE μ receptor 6DDE
ECL2 186 μ receptor 6DDE - -
ECL2 187 μ receptor 6DDE μ receptor 6DDE
ECL2 188 μ receptor 6DDE - -
ECL2 189 45.50x50 μ receptor 6DDE μ receptor 6DDE
ECL2 190 45.51x51 μ receptor 6DDE Y1 receptor 5ZBH
ECL2 191 45.52x52 μ receptor 6DDE - -
ECL2 192 - - - -
ECL2 193 - - - -
ECL2 194 - - - -
ECL2 195 - - - -
ECL2 196 - - - -
ECL2 197 - - - -
ECL2 198 - - - -
ECL2 199 - - - -
ECL2 200 - - - -
ECL2 201 - - - -
ECL2 202 - - - -
ECL2 203 - - - -
ECL2 204 - - - -
ECL2 205 - - - -
ECL2 206 - - - -
ECL2 207 - - - -
ECL2 208 - - - -
ECL2 209 - - - -
ECL2 210 - - - -
ECL2 211 - - - -
ECL2 212 - - - -
ECL2 213 - - - -
ECL2 214 - - - -
ECL2 215 - - - -
TM5 216 5.34x35 μ receptor 6DDE C5a1 receptor 5O9H
TM5 217 5.35x36 μ receptor 6DDE P2Y12 receptor 4NTJ
TM5 218 5.36x37 μ receptor 6DDE A2A receptor 4UHR
TM5 219 5.37x38 μ receptor 6DDE NTS1 receptor 4XES
TM5 220 5.38x39 μ receptor 6DDE P2Y12 receptor 4NTJ
TM5 221 5.39x40 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM5 222 5.40x41 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM5 223 5.41x42 μ receptor 6DDE AT1 receptor 4ZUD
TM5 224 5.42x43 μ receptor 6DDE C5a1 receptor 5O9H
TM5 225 5.43x44 μ receptor 6DDE μ receptor 6DDE
TM5 226 5.44x45 μ receptor 6DDE 5-HT2B receptor 4IB4
TM5 227 5.45x46 μ receptor 6DDE D4 receptor 5WIV
TM5 228 5.46x461 μ receptor 6DDE AT1 receptor 4ZUD
TM5 229 5.47x47 μ receptor 6DDE μ receptor 6DDE
TM5 230 5.48x48 μ receptor 6DDE PAR2 5NDD
TM5 231 5.49x49 μ receptor 6DDE P2Y1 receptor 4XNW
TM5 232 5.50x50 μ receptor 6DDE μ receptor 6DDE
TM5 233 5.51x51 μ receptor 6DDE μ receptor 6DDE
TM5 234 5.52x52 μ receptor 6DDE P2Y12 receptor 4NTJ
TM5 235 5.53x53 μ receptor 6DDE μ receptor 6DDE
TM5 236 5.54x54 μ receptor 6DDE μ receptor 6DDE
TM5 237 5.55x55 μ receptor 6DDE μ receptor 6DDE
TM5 238 5.56x56 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM5 239 5.57x57 μ receptor 6DDE μ receptor 6DDE
TM5 240 5.58x58 μ receptor 6DDE μ receptor 6DDE
TM5 241 5.59x59 μ receptor 6DDE PAF receptor 5ZKQ
TM5 242 5.60x60 μ receptor 6DDE - -
TM5 243 5.61x61 μ receptor 6DDE P2Y1 receptor 4XNW
TM5 244 5.62x62 μ receptor 6DDE P2Y1 receptor 4XNW
TM5 245 5.63x63 μ receptor 6DDE ETB receptor 5X93
TM5 246 5.64x64 μ receptor 6DDE NTS1 receptor 4XES
TM5 247 5.65x65 μ receptor 6DDE μ receptor 6DDE
TM5 248 5.66x66 μ receptor 6DDE 5-HT2B receptor 4IB4
TM5 249 5.67x67 μ receptor 6DDE P2Y12 receptor 4NTJ
TM5 250 5.68x68 μ receptor 6DDE - -
ICL3 251 - - - -
ICL3 252 - - - -
ICL3 253 - - - -
ICL3 254 - - - -
TM6 255 6.30x30 μ receptor 6DDE Y1 receptor 5ZBH
TM6 256 6.31x31 μ receptor 6DDE PAR1 3VW7
TM6 257 6.32x32 μ receptor 6DDE PAR2 5NDD
TM6 258 6.33x33 μ receptor 6DDE - -
TM6 259 6.34x34 μ receptor 6DDE AT1 receptor 4ZUD
TM6 260 6.35x35 μ receptor 6DDE 5-HT1B receptor 5V54
TM6 261 6.36x36 μ receptor 6DDE AT1 receptor 4ZUD
TM6 262 6.37x37 μ receptor 6DDE AT1 receptor 4ZUD
TM6 263 6.38x38 μ receptor 6DDE P2Y1 receptor 4XNW
TM6 264 6.39x39 μ receptor 6DDE CCR5 5UIW
TM6 265 6.40x40 μ receptor 6DDE P2Y1 receptor 4XNW
TM6 266 6.41x41 μ receptor 6DDE P2Y12 receptor 4NTJ
TM6 267 6.42x42 μ receptor 6DDE P2Y12 receptor 4NTJ
TM6 268 6.43x43 μ receptor 6DDE P2Y1 receptor 4XNW
TM6 269 6.44x44 μ receptor 6DDE μ receptor 6DDE
TM6 270 6.45x45 μ receptor 6DDE P2Y1 receptor 4XNW
TM6 271 6.46x46 μ receptor 6DDE PAR2 5NDD
TM6 272 6.47x47 μ receptor 6DDE PAR2 5NDD
TM6 273 6.48x48 μ receptor 6DDE μ receptor 6DDE
TM6 274 6.49x49 μ receptor 6DDE 5-HT2B receptor 4IB4
TM6 275 6.50x50 μ receptor 6DDE μ receptor 6DDE
TM6 276 6.51x51 μ receptor 6DDE NTS1 receptor 4XES
TM6 277 6.52x52 μ receptor 6DDE μ receptor 6DDE
TM6 278 6.53x53 μ receptor 6DDE - -
TM6 279 6.54x54 μ receptor 6DDE PAR2 5NDD
TM6 280 6.55x55 μ receptor 6DDE 5-HT2B receptor 4IB4
TM6 281 6.56x56 μ receptor 6DDE PAF receptor 5ZKQ
TM6 282 6.57x57 μ receptor 6DDE AT1 receptor 4ZUD
TM6 283 6.58x58 μ receptor 6DDE κ receptor 4DJH
TM6 284 6.59x59 μ receptor 6DDE P2Y1 receptor 4XNW
TM6 285 6.60x60 μ receptor 6DDE - -
TM6 286 6.61x61 μ receptor 6DDE Rhodopsin 5DYS
ECL3 287 - - - -
ECL3 288 μ receptor 5C1M - -
ECL3 289 μ receptor 5C1M - -
ECL3 290 - - - -
TM7 291 7.28x27 AT1 receptor 4ZUD - -
TM7 292 7.29x28 AT1 receptor 4ZUD CCR2 5T1A
TM7 293 7.30x29 μ receptor 6DDE AT2 receptor 5UNG
TM7 294 7.31x30 μ receptor 6DDE - -
TM7 295 7.32x31 μ receptor 6DDE A1 receptor 5UEN
TM7 296 7.33x32 μ receptor 6DDE AT2 receptor 5UNG
TM7 297 7.34x33 μ receptor 6DDE - -
TM7 298 7.35x34 μ receptor 6DDE 5-HT2B receptor 4IB4
TM7 299 7.36x35 μ receptor 6DDE AT1 receptor 4ZUD
TM7 300 7.37x36 μ receptor 6DDE PAR1 3VW7
TM7 301 7.38x37 μ receptor 6DDE PAR2 5NDD
TM7 302 7.39x38 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM7 303 7.40x39 μ receptor 6DDE μ receptor 6DDE
TM7 304 7.41x40 μ receptor 6DDE μ receptor 6DDE
TM7 305 7.42x41 μ receptor 6DDE P2Y1 receptor 4XNW
TM7 306 7.43x42 μ receptor 6DDE - -
TM7 307 7.44x43 μ receptor 6DDE NTS1 receptor 4XES
TM7 308 7.45x45 μ receptor 6DDE μ receptor 6DDE
TM7 309 7.46x46 μ receptor 6DDE μ receptor 6DDE
TM7 310 7.47x47 μ receptor 6DDE μ receptor 6DDE
TM7 311 7.48x48 μ receptor 6DDE A1 receptor 5UEN
TM7 312 7.49x49 μ receptor 6DDE μ receptor 6DDE
TM7 313 7.50x50 μ receptor 6DDE μ receptor 6DDE
TM7 314 7.51x51 μ receptor 6DDE P2Y1 receptor 4XNW
TM7 315 7.52x52 μ receptor 6DDE μ receptor 6DDE
TM7 316 7.53x53 μ receptor 6DDE μ receptor 6DDE
TM7 317 7.54x54 μ receptor 6DDE C5a1 receptor 5O9H
TM7 318 7.55x55 C5a1 receptor 5O9H PAR2 5NDD
TM7 319 7.56x56 C5a1 receptor 5O9H Rhodopsin 5DYS
H8 320 8.47x47 μ receptor 4DKL CCR5 5UIW
H8 321 8.48x48 μ receptor 4DKL A1 receptor 5UEN
H8 322 8.49x49 μ receptor 4DKL PAR2 5NDD
H8 323 8.50x50 μ receptor 4DKL μ receptor 4DKL
H8 324 8.51x51 μ receptor 4DKL μ receptor 4DKL
H8 325 8.52x52 μ receptor 4DKL M2 receptor 3UON
H8 326 8.53x53 μ receptor 4DKL - -
H8 327 8.54x54 μ receptor 4DKL - -
H8 328 8.55x55 μ receptor 4DKL CCR9 5LWE
H8 329 8.56x56 μ receptor 4DKL OX2 receptor 5WS3
H8 330 8.57x57 μ receptor 4DKL 5-HT1B receptor 4IAQ
H8 331 8.58x58 μ receptor 4DKL CCR5 5UIW
H8 332 8.59x59 μ receptor 4DKL OX2 receptor 5WS3
H8 333 8.60x60 apelin receptor 5VBL - -
H8 334 8.61x61 apelin receptor 5VBL CCR9 5LWE
C-term 335 - - - -
C-term 336 - - - -
C-term 337 - - - -
C-term 338 - - - -
C-term 339 - - - -