CXCR1 homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Intermediate (Δ distance (Å): 7.26 docs)

VERSION

2018-07-10

MAIN TEMPLATE

μ receptor (sequence similarity: 49%) PDB: 6DDE

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 76.8 15.5 7.7
Side-chains 23.9 55.9 20.2

Number of backbone templates: 5
Number of rotamer templates: 33

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5T1A
6DDE
4ZUD
3ODU
5UIW
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 29 - - - -
N-term 30 - - - -
N-term 31 - - - -
N-term 32 - - - -
N-term 33 - - - -
TM1 34 1.27x27 CCR2 5T1A - -
TM1 35 1.28x28 CCR2 5T1A M4 receptor 5DSG
TM1 36 1.29x29 CCR2 5T1A BLT1 receptor 5X33
TM1 37 1.30x30 CCR2 5T1A PAR2 5NDD
TM1 38 1.31x31 μ receptor 6DDE CXCR4 3ODU
TM1 39 1.32x32 μ receptor 6DDE NTS1 receptor 4XES
TM1 40 1.33x33 μ receptor 6DDE P2Y1 receptor 4XNW
TM1 41 1.34x34 μ receptor 6DDE A2A receptor 4UHR
TM1 42 1.35x35 μ receptor 6DDE PAR1 3VW7
TM1 43 1.36x36 μ receptor 6DDE A2A receptor 4UHR
TM1 44 1.37x37 μ receptor 6DDE PAR2 5NDD
TM1 45 1.38x38 μ receptor 6DDE OX1 receptor 4ZJ8
TM1 46 1.39x39 μ receptor 6DDE μ receptor 6DDE
TM1 47 1.40x40 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM1 48 1.41x41 μ receptor 6DDE P2Y1 receptor 4XNW
TM1 49 1.42x42 μ receptor 6DDE μ receptor 6DDE
TM1 50 1.43x43 μ receptor 6DDE P2Y1 receptor 4XNW
TM1 51 1.44x44 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM1 52 1.45x45 μ receptor 6DDE PAF receptor 5ZKQ
TM1 53 1.46x46 μ receptor 6DDE PAR1 3VW7
TM1 54 1.47x47 μ receptor 6DDE PAR1 3VW7
TM1 55 1.48x48 μ receptor 6DDE P2Y1 receptor 4XNW
TM1 56 1.49x49 μ receptor 6DDE μ receptor 6DDE
TM1 57 1.50x50 μ receptor 6DDE μ receptor 6DDE
TM1 58 1.51x51 μ receptor 6DDE P2Y1 receptor 4XNW
TM1 59 1.52x52 μ receptor 6DDE μ receptor 6DDE
TM1 60 1.53x53 μ receptor 6DDE μ receptor 6DDE
TM1 61 1.54x54 μ receptor 6DDE μ receptor 6DDE
TM1 62 1.55x55 μ receptor 6DDE 5-HT2B receptor 4IB4
TM1 63 1.56x56 μ receptor 6DDE μ receptor 6DDE
TM1 64 1.57x57 μ receptor 6DDE AT1 receptor 4YAY
TM1 65 1.58x58 μ receptor 6DDE PAR2 5NDD
TM1 66 1.59x59 μ receptor 6DDE CXCR4 3ODU
TM1 67 1.60x60 μ receptor 6DDE apelin receptor 5VBL
ICL1 68 12.48x48 - - - -
ICL1 69 12.49x49 AT1 receptor 4ZUD - -
ICL1 70 12.50x50 AT1 receptor 4ZUD - -
ICL1 71 12.51x51 - - - -
TM2 72 2.37x37 CCR2 5T1A P2Y1 receptor 4XNW
TM2 73 2.38x38 μ receptor 6DDE A2A receptor 4UHR
TM2 74 2.39x39 μ receptor 6DDE μ receptor 6DDE
TM2 75 2.40x40 μ receptor 6DDE CCR2 5T1A
TM2 76 2.41x41 μ receptor 6DDE P2Y1 receptor 4XNW
TM2 77 2.42x42 μ receptor 6DDE μ receptor 6DDE
TM2 78 2.43x43 μ receptor 6DDE NTS1 receptor 4XES
TM2 79 2.44x44 μ receptor 6DDE PAR1 3VW7
TM2 80 2.45x45 μ receptor 6DDE μ receptor 6DDE
TM2 81 2.46x46 μ receptor 6DDE μ receptor 6DDE
TM2 82 2.47x47 μ receptor 6DDE μ receptor 6DDE
TM2 83 2.48x48 μ receptor 6DDE μ receptor 6DDE
TM2 84 2.49x49 μ receptor 6DDE μ receptor 6DDE
TM2 85 2.50x50 μ receptor 6DDE μ receptor 6DDE
TM2 86 2.51x51 μ receptor 6DDE PAR2 5NDD
TM2 87 2.52x52 μ receptor 6DDE μ receptor 6DDE
TM2 88 2.53x53 μ receptor 6DDE PAR1 3VW7
TM2 89 2.54x54 μ receptor 6DDE D4 receptor 5WIV
TM2 90 2.55x55 μ receptor 6DDE P2Y1 receptor 4XNW
TM2 91 2.56x56 μ receptor 6DDE μ receptor 6DDE
TM2 92 2.57x57 μ receptor 6DDE μ receptor 6DDE
TM2 93 2.58x58 μ receptor 6DDE μ receptor 6DDE
TM2 94 2.59x59 μ receptor 6DDE 5-HT2B receptor 4IB4
TM2 95 2.60x60 μ receptor 6DDE PAF receptor 5ZKQ
TM2 96 2.61x61 μ receptor 6DDE FFA1 receptor 5TZY
TM2 97 2.62x62 μ receptor 6DDE PAR2 5NDD
TM2 98 2.63x63 μ receptor 6DDE P2Y12 receptor 4NTJ
TM2 99 2.64x64 μ receptor 6DDE - -
TM2 100 2.65x65 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM2 101 2.66x66 μ receptor 6DDE P2Y1 receptor 4XNW
ECL1 102 23.49x49 - - - -
ECL1 103 23.50x50 CCR2 5T1A CCR2 5T1A
ECL1 104 23.51x51 CCR2 5T1A P2Y1 receptor 4XNW
ECL1 105 23.52x52 - - - -
TM3 106 3.21x21 μ receptor 6DDE μ receptor 6DDE
TM3 107 3.22x22 μ receptor 6DDE P2Y12 receptor 4NTJ
TM3 108 3.23x23 μ receptor 6DDE P2Y12 receptor 4NTJ
TM3 109 3.24x24 μ receptor 6DDE μ receptor 6DDE
TM3 110 3.25x25 μ receptor 6DDE μ receptor 6DDE
TM3 111 3.26x26 μ receptor 6DDE μ receptor 6DDE
TM3 112 3.27x27 μ receptor 6DDE PAR2 5NDD
TM3 113 3.28x28 μ receptor 6DDE μ receptor 6DDE
TM3 114 3.29x29 μ receptor 6DDE P2Y12 receptor 4NTJ
TM3 115 3.30x30 μ receptor 6DDE - -
TM3 116 3.31x31 μ receptor 6DDE NTS1 receptor 4XES
TM3 117 3.32x32 μ receptor 6DDE - -
TM3 118 3.33x33 μ receptor 6DDE - -
TM3 119 3.34x34 μ receptor 6DDE P2Y1 receptor 4XNW
TM3 120 3.35x35 μ receptor 6DDE μ receptor 6DDE
TM3 121 3.36x36 μ receptor 6DDE CCR5 5UIW
TM3 122 3.37x37 μ receptor 6DDE P2Y1 receptor 4XNW
TM3 123 3.38x38 μ receptor 6DDE A2A receptor 4UHR
TM3 124 3.39x39 μ receptor 6DDE FFA1 receptor 5TZY
TM3 125 3.40x40 μ receptor 6DDE μ receptor 6DDE
TM3 126 3.41x41 μ receptor 6DDE P2Y1 receptor 4XNW
TM3 127 3.42x42 μ receptor 6DDE PAR1 3VW7
TM3 128 3.43x43 μ receptor 6DDE μ receptor 6DDE
TM3 129 3.44x44 μ receptor 6DDE NTS1 receptor 4XES
TM3 130 3.45x45 μ receptor 6DDE P2Y1 receptor 4XNW
TM3 131 3.46x46 μ receptor 6DDE P2Y1 receptor 4XNW
TM3 132 3.47x47 μ receptor 6DDE μ receptor 6DDE
TM3 133 3.48x48 μ receptor 6DDE μ receptor 6DDE
TM3 134 3.49x49 μ receptor 6DDE μ receptor 6DDE
TM3 135 3.50x50 μ receptor 6DDE μ receptor 6DDE
TM3 136 3.51x51 μ receptor 6DDE μ receptor 6DDE
TM3 137 3.52x52 μ receptor 6DDE PAR1 3VW7
TM3 138 3.53x53 μ receptor 6DDE μ receptor 6DDE
TM3 139 3.54x54 μ receptor 6DDE PAR2 5NDD
TM3 140 3.55x55 μ receptor 6DDE P2Y1 receptor 4XNW
TM3 141 3.56x56 μ receptor 6DDE μ receptor 6DDE
ICL2 142 34.50x50 - - - -
ICL2 143 34.51x51 CCR2 5T1A - -
ICL2 144 34.52x52 CCR2 5T1A A2A receptor 4UHR
ICL2 145 34.53x53 CCR2 5T1A - -
ICL2 146 34.54x54 CCR2 5T1A CCR2 5T1A
ICL2 147 34.55x55 CCR2 5T1A NTS1 receptor 4XES
ICL2 148 34.56x56 - - - -
TM4 149 4.38x38 μ receptor 6DDE P2Y1 receptor 4XNW
TM4 150 4.39x39 μ receptor 6DDE NTS1 receptor 4XES
TM4 151 4.40x40 μ receptor 6DDE - -
TM4 152 4.41x41 μ receptor 6DDE C5a1 receptor 5O9H
TM4 153 4.42x42 μ receptor 6DDE D2 receptor 6CM4
TM4 154 4.43x43 μ receptor 6DDE μ receptor 6DDE
TM4 155 4.44x44 μ receptor 6DDE PAR1 3VW7
TM4 156 4.45x45 μ receptor 6DDE μ receptor 6DDE
TM4 157 4.46x46 μ receptor 6DDE PAR1 3VW7
TM4 158 4.47x47 μ receptor 6DDE PAR1 3VW7
TM4 159 4.48x48 μ receptor 6DDE CXCR4 3ODU
TM4 160 4.49x49 μ receptor 6DDE A2A receptor 4UHR
TM4 161 4.50x50 μ receptor 6DDE μ receptor 6DDE
TM4 162 4.51x51 μ receptor 6DDE C5a1 receptor 5O9H
TM4 163 4.52x52 μ receptor 6DDE μ receptor 6DDE
TM4 164 4.53x53 μ receptor 6DDE μ receptor 6DDE
TM4 165 4.54x54 μ receptor 6DDE - -
TM4 166 4.55x55 μ receptor 6DDE - -
TM4 167 4.56x56 μ receptor 6DDE NTS1 receptor 4XES
TM4 168 4.57x57 CCR2 5T1A P2Y12 receptor 4NTJ
TM4 169 4.58x59 CCR2 5T1A FFA1 receptor 5TZY
TM4 170 4.59x60 μ receptor 6DDE PAR1 3VW7
TM4 171 4.60x61 μ receptor 6DDE FFA1 receptor 5TZY
TM4 172 4.61x62 μ receptor 6DDE μ receptor 6DDE
TM4 173 4.62x63 CCR2 5T1A PAR1 3VW7
TM4 174 4.63x64 CCR2 5T1A CCR2 5T1A
TM4 175 4.64x65 CCR2 5T1A AT1 receptor 4ZUD
ECL2 176 μ receptor 6DDE - -
ECL2 177 μ receptor 6DDE - -
ECL2 178 μ receptor 6DDE - -
ECL2 179 μ receptor 6DDE - -
ECL2 180 μ receptor 6DDE - -
ECL2 181 μ receptor 6DDE - -
ECL2 182 μ receptor 6DDE - -
ECL2 183 μ receptor 6DDE μ receptor 6DDE
ECL2 184 μ receptor 6DDE - -
ECL2 185 μ receptor 6DDE - -
ECL2 186 - - - -
ECL2 187 45.50x50 μ receptor 6DDE μ receptor 6DDE
ECL2 188 45.51x51 μ receptor 6DDE P2Y1 receptor 4XNW
ECL2 189 45.52x52 μ receptor 6DDE OX2 receptor 5WS3
ECL2 190 μ receptor 6DDE - -
ECL2 191 μ receptor 6DDE - -
ECL2 192 μ receptor 6DDE - -
ECL2 193 μ receptor 6DDE - -
ECL2 194 μ receptor 6DDE μ receptor 6DDE
TM5 195 5.31x32 CCR2 5T1A - -
TM5 196 5.32x33 CCR2 5T1A AT2 receptor 5UNG
TM5 197 5.33x34 μ receptor 6DDE - -
TM5 198 5.34x35 μ receptor 6DDE μ receptor 6DDE
TM5 199 5.35x36 μ receptor 6DDE Y1 receptor 5ZBH
TM5 200 5.36x37 μ receptor 6DDE A2A receptor 4UHR
TM5 201 5.37x38 μ receptor 6DDE NTS1 receptor 4XES
TM5 202 5.38x39 μ receptor 6DDE μ receptor 6DDE
TM5 203 5.39x40 μ receptor 6DDE FFA1 receptor 5TZY
TM5 204 5.40x41 μ receptor 6DDE μ receptor 6DDE
TM5 205 5.41x42 μ receptor 6DDE Y1 receptor 5ZBH
TM5 206 5.42x43 μ receptor 6DDE - -
TM5 207 5.43x44 μ receptor 6DDE - -
TM5 208 5.44x45 μ receptor 6DDE LPA6 receptor 5XSZ
TM5 209 5.45x46 μ receptor 6DDE μ receptor 6DDE
TM5 210 5.46x461 μ receptor 6DDE CCR2 5T1A
TM5 211 5.47x47 μ receptor 6DDE μ receptor 6DDE
TM5 212 5.48x48 μ receptor 6DDE μ receptor 6DDE
TM5 213 5.49x49 μ receptor 6DDE P2Y1 receptor 4XNW
TM5 214 5.50x50 μ receptor 6DDE μ receptor 6DDE
TM5 215 5.51x51 μ receptor 6DDE P2Y1 receptor 4XNW
TM5 216 5.52x52 μ receptor 6DDE PAR2 5NDD
TM5 217 5.53x53 μ receptor 6DDE NTS1 receptor 4XES
TM5 218 5.54x54 μ receptor 6DDE 5-HT2B receptor 4IB4
TM5 219 5.55x55 μ receptor 6DDE P2Y1 receptor 4XNW
TM5 220 5.56x56 μ receptor 6DDE PAF receptor 5ZKQ
TM5 221 5.57x57 μ receptor 6DDE μ receptor 6DDE
TM5 222 5.58x58 μ receptor 6DDE μ receptor 6DDE
TM5 223 5.59x59 μ receptor 6DDE μ receptor 6DDE
TM5 224 5.60x60 μ receptor 6DDE C5a1 receptor 5O9H
TM5 225 5.61x61 μ receptor 6DDE 5-HT2B receptor 4IB4
TM5 226 5.62x62 μ receptor 6DDE FFA1 receptor 5TZY
TM5 227 5.63x63 μ receptor 6DDE P2Y1 receptor 4XNW
TM5 228 5.64x64 μ receptor 6DDE PAF receptor 5ZKQ
TM5 229 5.65x65 μ receptor 6DDE μ receptor 6DDE
TM5 230 5.66x66 μ receptor 6DDE - -
TM5 231 5.67x67 μ receptor 6DDE 5-HT2B receptor 4IB4
TM5 232 5.68x68 μ receptor 6DDE C5a1 receptor 5O9H
ICL3 233 - - - -
ICL3 234 - - - -
ICL3 235 - - - -
ICL3 236 - - - -
TM6 237 6.30x30 μ receptor 6DDE PAR1 3VW7
TM6 238 6.31x31 μ receptor 6DDE CCR5 4MBS
TM6 239 6.32x32 μ receptor 6DDE μ receptor 6DDE
TM6 240 6.33x33 μ receptor 6DDE 5-HT2B receptor 4IB4
TM6 241 6.34x34 μ receptor 6DDE - -
TM6 242 6.35x35 μ receptor 6DDE μ receptor 6DDE
TM6 243 6.36x36 μ receptor 6DDE NTS1 receptor 4XES
TM6 244 6.37x37 μ receptor 6DDE CCR2 5T1A
TM6 245 6.38x38 μ receptor 6DDE CCR2 5T1A
TM6 246 6.39x39 μ receptor 6DDE PAR1 3VW7
TM6 247 6.40x40 μ receptor 6DDE μ receptor 6DDE
TM6 248 6.41x41 μ receptor 6DDE μ receptor 6DDE
TM6 249 6.42x42 μ receptor 6DDE P2Y1 receptor 4XNW
TM6 250 6.43x43 μ receptor 6DDE LPA6 receptor 5XSZ
TM6 251 6.44x44 μ receptor 6DDE μ receptor 6DDE
TM6 252 6.45x45 μ receptor 6DDE 5-HT2B receptor 4IB4
TM6 253 6.46x46 μ receptor 6DDE PAR2 5NDD
TM6 254 6.47x47 μ receptor 6DDE PAR1 3VW7
TM6 255 6.48x48 μ receptor 6DDE μ receptor 6DDE
TM6 256 6.49x49 μ receptor 6DDE NTS1 receptor 4XES
TM6 257 6.50x50 μ receptor 6DDE μ receptor 6DDE
TM6 258 6.51x51 μ receptor 6DDE NTS1 receptor 4XES
TM6 259 6.52x52 μ receptor 6DDE PAR1 3VW7
TM6 260 6.53x53 μ receptor 6DDE PAR2 5NDD
TM6 261 6.54x54 μ receptor 6DDE PAF receptor 5ZKQ
TM6 262 6.55x55 μ receptor 6DDE PAR1 3VW7
TM6 263 6.56x56 μ receptor 6DDE NTS1 receptor 4XES
TM6 264 6.57x57 μ receptor 6DDE PAR1 3VW7
TM6 265 6.58x58 μ receptor 6DDE CXCR4 3ODU
TM6 266 6.59x59 μ receptor 6DDE P2Y12 receptor 4NTJ
TM6 267 6.60x60 μ receptor 6DDE 5-HT2B receptor 4IB4
TM6 268 6.61x61 μ receptor 6DDE - -
TM6 269 6.62x62 CCR2 5T1A P2Y1 receptor 4XNW
TM6 270 6.63x63 CCR2 5T1A P2Y12 receptor 4PXZ
TM6 271 6.64x64 CCR2 5T1A - -
ECL3 272 - - - -
ECL3 273 CXCR4 3ODU CXCR4 3ODU
ECL3 274 CXCR4 3ODU - -
ECL3 275 - - - -
TM7 276 7.24x23 CCR5 5UIW AT2 receptor 5UNG
TM7 277 7.25x24 CCR5 5UIW CCR5 5UIW
TM7 278 7.26x25 CCR5 5UIW CXCR4 3ODU
TM7 279 7.27x26 CCR5 5UIW - -
TM7 280 7.28x27 CCR5 5UIW OX2 receptor 5WS3
TM7 281 7.29x28 CCR5 5UIW CCR5 5UIW
TM7 282 7.30x29 μ receptor 6DDE Y1 receptor 5ZBH
TM7 283 7.31x30 μ receptor 6DDE PAF receptor 5ZKQ
TM7 284 7.32x31 μ receptor 6DDE FFA1 receptor 5TZY
TM7 285 7.33x32 μ receptor 6DDE US28 4XT1
TM7 286 7.34x33 μ receptor 6DDE PAR1 3VW7
TM7 287 7.35x34 μ receptor 6DDE 5-HT2B receptor 4IB4
TM7 288 7.36x35 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM7 289 7.37x36 μ receptor 6DDE D4 receptor 5WIV
TM7 290 7.38x37 μ receptor 6DDE P2Y1 receptor 4XNW
TM7 291 7.39x38 μ receptor 6DDE CCR2 5T1A
TM7 292 7.40x39 μ receptor 6DDE FFA1 receptor 5TZY
TM7 293 7.41x40 μ receptor 6DDE μ receptor 6DDE
TM7 294 7.42x41 μ receptor 6DDE μ receptor 6DDE
TM7 295 7.43x42 μ receptor 6DDE CXCR4 3ODU
TM7 296 7.44x43 μ receptor 6DDE P2Y1 receptor 4XNW
TM7 297 7.45x45 μ receptor 6DDE CCR2 5T1A
TM7 298 7.46x46 μ receptor 6DDE μ receptor 6DDE
TM7 299 7.47x47 μ receptor 6DDE μ receptor 6DDE
TM7 300 7.48x48 μ receptor 6DDE μ receptor 6DDE
TM7 301 7.49x49 μ receptor 6DDE μ receptor 6DDE
TM7 302 7.50x50 μ receptor 6DDE μ receptor 6DDE
TM7 303 7.51x51 μ receptor 6DDE P2Y1 receptor 4XNW
TM7 304 7.52x52 μ receptor 6DDE PAR1 3VW7
TM7 305 7.53x53 μ receptor 6DDE μ receptor 6DDE
TM7 306 7.54x54 μ receptor 6DDE μ receptor 6DDE
TM7 307 7.55x55 CCR2 5T1A CCR2 5T1A
TM7 308 7.56x56 CCR2 5T1A - -
H8 309 8.47x47 CCR2 5T1A CCR2 5T1A
H8 310 8.48x48 CCR2 5T1A A1 receptor 5UEN
H8 311 8.49x49 CCR2 5T1A μ receptor 4DKL
H8 312 8.50x50 CCR2 5T1A PAR2 5NDD
H8 313 8.51x51 CCR2 5T1A PAR2 5NDD
H8 314 8.52x52 CCR2 5T1A CB1 receptor 5XRA
H8 315 8.53x53 CCR2 5T1A - -
H8 316 8.54x54 CCR2 5T1A 5-HT2B receptor 4IB4
H8 317 8.55x55 CCR2 5T1A CCR5 5UIW
H8 318 8.56x56 CCR2 5T1A 5-HT1B receptor 4IAQ
H8 319 8.57x57 CCR2 5T1A A2A receptor 4UHR
H8 320 8.58x58 CCR2 5T1A PAR2 5NDD
C-term 321 - - - -
C-term 322 - - - -
C-term 323 - - - -
C-term 324 - - - -
C-term 325 - - - -