GAL2 receptor homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Intermediate (Δ distance (Å): 7.24 docs)

VERSION

2018-07-10

MAIN TEMPLATE

μ receptor (sequence similarity: 53%) PDB: 6DDE

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 76.7 16.2 7.1
Side-chains 23.6 56.1 20.3

Number of backbone templates: 6
Number of rotamer templates: 41

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4DJH
6B73
6DDE
5C1M
4ZJ8
5DYS
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 18 - - - -
N-term 19 - - - -
N-term 20 - - - -
N-term 21 - - - -
N-term 22 - - - -
TM1 23 1.30x30 κ receptor 4DJH 5-HT1B receptor 4IAQ
TM1 24 1.31x31 μ receptor 6DDE M2 receptor 4MQT
TM1 25 1.32x32 μ receptor 6DDE μ receptor 6DDE
TM1 26 1.33x33 μ receptor 6DDE NTS1 receptor 4XES
TM1 27 1.34x34 μ receptor 6DDE κ receptor 4DJH
TM1 28 1.35x35 μ receptor 6DDE NTS1 receptor 4XES
TM1 29 1.36x36 μ receptor 6DDE PAR1 3VW7
TM1 30 1.37x37 μ receptor 6DDE P2Y12 receptor 4NTJ
TM1 31 1.38x38 μ receptor 6DDE 5-HT2B receptor 4IB4
TM1 32 1.39x39 μ receptor 6DDE LPA6 receptor 5XSZ
TM1 33 1.40x40 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM1 34 1.41x41 μ receptor 6DDE 5-HT2B receptor 4IB4
TM1 35 1.42x42 μ receptor 6DDE A2A receptor 4UHR
TM1 36 1.43x43 μ receptor 6DDE NTS1 receptor 4XES
TM1 37 1.44x44 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM1 38 1.45x45 μ receptor 6DDE μ receptor 6DDE
TM1 39 1.46x46 μ receptor 6DDE μ receptor 6DDE
TM1 40 1.47x47 μ receptor 6DDE NTS1 receptor 4XES
TM1 41 1.48x48 μ receptor 6DDE NTS1 receptor 4XES
TM1 42 1.49x49 μ receptor 6DDE μ receptor 6DDE
TM1 43 1.50x50 μ receptor 6DDE μ receptor 6DDE
TM1 44 1.51x51 μ receptor 6DDE 5-HT2B receptor 4IB4
TM1 45 1.52x52 μ receptor 6DDE μ receptor 6DDE
TM1 46 1.53x53 μ receptor 6DDE μ receptor 6DDE
TM1 47 1.54x54 μ receptor 6DDE NTS1 receptor 4XES
TM1 48 1.55x55 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM1 49 1.56x56 μ receptor 6DDE μ receptor 6DDE
TM1 50 1.57x57 μ receptor 6DDE NTS1 receptor 4XES
TM1 51 1.58x58 μ receptor 6DDE PAR2 5NDD
TM1 52 1.59x59 μ receptor 6DDE NTS1 receptor 4XES
TM1 53 1.60x60 μ receptor 6DDE - -
ICL1 54 12.48x48 - - - -
ICL1 55 12.49x49 κ receptor 4DJH M3 receptor 4U15
ICL1 56 12.50x50 κ receptor 4DJH - -
ICL1 57 12.51x51 - - - -
TM2 58 2.37x37 κ receptor 4DJH P2Y1 receptor 4XNW
TM2 59 2.38x38 μ receptor 6DDE NTS1 receptor 4XES
TM2 60 2.39x39 μ receptor 6DDE μ receptor 6DDE
TM2 61 2.40x40 μ receptor 6DDE 5-HT2B receptor 4IB4
TM2 62 2.41x41 μ receptor 6DDE BLT1 receptor 5X33
TM2 63 2.42x42 μ receptor 6DDE 5-HT2B receptor 4IB4
TM2 64 2.43x43 μ receptor 6DDE μ receptor 6DDE
TM2 65 2.44x44 μ receptor 6DDE PAR1 3VW7
TM2 66 2.45x45 μ receptor 6DDE μ receptor 6DDE
TM2 67 2.46x46 μ receptor 6DDE μ receptor 6DDE
TM2 68 2.47x47 μ receptor 6DDE FFA1 receptor 5TZY
TM2 69 2.48x48 μ receptor 6DDE 5-HT2B receptor 4IB4
TM2 70 2.49x49 μ receptor 6DDE μ receptor 6DDE
TM2 71 2.50x50 μ receptor 6DDE μ receptor 6DDE
TM2 72 2.51x51 μ receptor 6DDE NTS1 receptor 4XES
TM2 73 2.52x52 μ receptor 6DDE AT1 receptor 4ZUD
TM2 74 2.53x53 μ receptor 6DDE PAR1 3VW7
TM2 75 2.54x54 μ receptor 6DDE P2Y12 receptor 4NTJ
TM2 76 2.55x55 OX1 receptor 4ZJ8 NTS1 receptor 4XES
TM2 77 2.56x551 OX1 receptor 4ZJ8 - -
TM2 78 2.57x56 OX1 receptor 4ZJ8 OX1 receptor 4ZJ8
TM2 79 2.58x57 μ receptor 6DDE CCR5 5UIW
TM2 80 2.59x58 μ receptor 6DDE μ receptor 6DDE
TM2 81 2.60x59 μ receptor 6DDE μ receptor 6DDE
TM2 82 2.61x60 μ receptor 6DDE μ receptor 6DDE
TM2 83 2.62x61 μ receptor 6DDE FFA1 receptor 5TZY
TM2 84 2.63x62 μ receptor 6DDE A2A receptor 3QAK
TM2 85 2.64x63 μ receptor 6DDE A2A receptor 4UHR
TM2 86 2.65x64 μ receptor 6DDE μ receptor 6DDE
TM2 87 2.66x65 μ receptor 6DDE A2A receptor 4UHR
TM2 88 2.67x66 μ receptor 6DDE NOP receptor 5DHG
ECL1 89 - - - -
ECL1 90 23.49x49 μ receptor 5C1M - -
ECL1 91 23.50x50 μ receptor 5C1M μ receptor 5C1M
ECL1 92 23.51x51 μ receptor 5C1M CCR2 5T1A
ECL1 93 23.52x52 - - - -
TM3 94 3.21x21 μ receptor 6DDE μ receptor 6DDE
TM3 95 3.22x22 μ receptor 6DDE PAR1 3VW7
TM3 96 3.23x23 μ receptor 6DDE δ receptor 4N6H
TM3 97 3.24x24 μ receptor 6DDE μ receptor 6DDE
TM3 98 3.25x25 μ receptor 6DDE μ receptor 6DDE
TM3 99 3.26x26 μ receptor 6DDE μ receptor 6DDE
TM3 100 3.27x27 μ receptor 6DDE 5-HT2B receptor 4IB4
TM3 101 3.28x28 μ receptor 6DDE μ receptor 6DDE
TM3 102 3.29x29 μ receptor 6DDE CXCR4 3ODU
TM3 103 3.30x30 μ receptor 6DDE NTS1 receptor 4XES
TM3 104 3.31x31 μ receptor 6DDE NTS1 receptor 4XES
TM3 105 3.32x32 μ receptor 6DDE apelin receptor 5VBL
TM3 106 3.33x33 μ receptor 6DDE PAF receptor 5ZKQ
TM3 107 3.34x34 μ receptor 6DDE 5-HT2B receptor 4IB4
TM3 108 3.35x35 μ receptor 6DDE P2Y12 receptor 4NTJ
TM3 109 3.36x36 μ receptor 6DDE μ receptor 6DDE
TM3 110 3.37x37 μ receptor 6DDE - -
TM3 111 3.38x38 μ receptor 6DDE NTS1 receptor 4XES
TM3 112 3.39x39 μ receptor 6DDE μ receptor 6DDE
TM3 113 3.40x40 μ receptor 6DDE - -
TM3 114 3.41x41 μ receptor 6DDE μ receptor 6DDE
TM3 115 3.42x42 μ receptor 6DDE μ receptor 6DDE
TM3 116 3.43x43 μ receptor 6DDE μ receptor 6DDE
TM3 117 3.44x44 μ receptor 6DDE NTS1 receptor 4XES
TM3 118 3.45x45 μ receptor 6DDE 5-HT2B receptor 4IB4
TM3 119 3.46x46 μ receptor 6DDE - -
TM3 120 3.47x47 μ receptor 6DDE μ receptor 6DDE
TM3 121 3.48x48 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM3 122 3.49x49 μ receptor 6DDE μ receptor 6DDE
TM3 123 3.50x50 μ receptor 6DDE μ receptor 6DDE
TM3 124 3.51x51 μ receptor 6DDE μ receptor 6DDE
TM3 125 3.52x52 μ receptor 6DDE NTS1 receptor 4XES
TM3 126 3.53x53 μ receptor 6DDE μ receptor 6DDE
TM3 127 3.54x54 μ receptor 6DDE NTS1 receptor 4XES
TM3 128 3.55x55 μ receptor 6DDE A2A receptor 4UHR
TM3 129 3.56x56 μ receptor 6DDE PAR1 3VW7
ICL2 130 34.50x50 - - - -
ICL2 131 34.51x51 κ receptor 6B73 A2A receptor 4UHR
ICL2 132 34.52x52 κ receptor 6B73 D3 receptor 3PBL
ICL2 133 34.53x53 κ receptor 6B73 P2Y1 receptor 4XNW
ICL2 134 34.54x54 κ receptor 6B73 LPA6 receptor 5XSZ
ICL2 135 34.55x55 κ receptor 6B73 - -
ICL2 136 34.56x56 κ receptor 6B73 NTS1 receptor 4XES
ICL2 137 34.57x57 - - - -
TM4 138 4.38x38 μ receptor 6DDE μ receptor 6DDE
TM4 139 4.39x39 μ receptor 6DDE μ receptor 6DDE
TM4 140 4.40x40 μ receptor 6DDE μ receptor 6DDE
TM4 141 4.41x41 μ receptor 6DDE μ receptor 6DDE
TM4 142 4.42x42 μ receptor 6DDE μ receptor 6DDE
TM4 143 4.43x43 μ receptor 6DDE D4 receptor 5WIV
TM4 144 4.44x44 μ receptor 6DDE NOP receptor 5DHG
TM4 145 4.45x45 μ receptor 6DDE apelin receptor 5VBL
TM4 146 4.46x46 μ receptor 6DDE NTS1 receptor 4XES
TM4 147 4.47x47 μ receptor 6DDE M3 receptor 4U15
TM4 148 4.48x48 μ receptor 6DDE P2Y1 receptor 4XNW
TM4 149 4.49x49 μ receptor 6DDE NTS1 receptor 4XES
TM4 150 4.50x50 μ receptor 6DDE μ receptor 6DDE
TM4 151 4.51x51 μ receptor 6DDE BLT1 receptor 5X33
TM4 152 4.52x52 μ receptor 6DDE μ receptor 6DDE
TM4 153 4.53x53 μ receptor 6DDE μ receptor 6DDE
TM4 154 4.54x54 μ receptor 6DDE PAR2 5NDD
TM4 155 4.55x55 μ receptor 6DDE NTS1 receptor 4XES
TM4 156 4.56x56 μ receptor 6DDE - -
TM4 157 4.57x57 OX1 receptor 4ZJ8 5-HT1B receptor 4IAQ
TM4 158 4.58x59 OX1 receptor 4ZJ8 - -
TM4 159 4.59x60 μ receptor 6DDE NTS1 receptor 4XES
TM4 160 4.60x61 μ receptor 6DDE - -
TM4 161 4.61x62 μ receptor 6DDE NTS1 receptor 4XES
TM4 162 4.62x63 OX1 receptor 4ZJ8 - -
TM4 163 4.63x64 OX1 receptor 4ZJ8 Y1 receptor 5ZBH
TM4 164 4.64x65 OX1 receptor 4ZJ8 - -
ECL2 165 μ receptor 6DDE - -
ECL2 166 μ receptor 6DDE - -
ECL2 167 μ receptor 6DDE - -
ECL2 168 μ receptor 6DDE - -
ECL2 169 μ receptor 6DDE - -
ECL2 170 μ receptor 6DDE - -
ECL2 171 μ receptor 6DDE - -
ECL2 172 μ receptor 6DDE - -
ECL2 173 μ receptor 6DDE - -
ECL2 174 μ receptor 6DDE - -
ECL2 175 45.50x50 μ receptor 6DDE μ receptor 6DDE
ECL2 176 45.51x51 μ receptor 6DDE - -
ECL2 177 45.52x52 μ receptor 6DDE NTS1 receptor 4XES
ECL2 178 - - - -
TM5 179 5.30x31 κ receptor 4DJH - -
TM5 180 5.31x32 κ receptor 4DJH δ receptor 4N6H
TM5 181 5.32x33 κ receptor 4DJH AT2 receptor 5UNG
TM5 182 5.33x34 μ receptor 6DDE - -
TM5 183 5.34x35 μ receptor 6DDE C5a1 receptor 5O9H
TM5 184 5.35x36 μ receptor 6DDE Y1 receptor 5ZBH
TM5 185 5.36x37 μ receptor 6DDE C5a1 receptor 5O9H
TM5 186 5.37x38 μ receptor 6DDE ETB receptor 5X93
TM5 187 5.38x39 μ receptor 6DDE κ receptor 4DJH
TM5 188 5.39x40 μ receptor 6DDE ETB receptor 5X93
TM5 189 5.40x41 μ receptor 6DDE μ receptor 6DDE
TM5 190 5.41x42 μ receptor 6DDE μ receptor 6DDE
TM5 191 5.42x43 μ receptor 6DDE P2Y1 receptor 4XNW
TM5 192 5.43x44 μ receptor 6DDE μ receptor 6DDE
TM5 193 5.44x45 μ receptor 6DDE PAR1 3VW7
TM5 194 5.45x46 μ receptor 6DDE μ receptor 6DDE
TM5 195 5.46x461 μ receptor 6DDE NTS1 receptor 4XES
TM5 196 5.47x47 μ receptor 6DDE OX1 receptor 4ZJ8
TM5 197 5.48x48 μ receptor 6DDE NTS1 receptor 4XES
TM5 198 5.49x49 μ receptor 6DDE PAF receptor 5ZKQ
TM5 199 5.50x50 μ receptor 6DDE μ receptor 6DDE
TM5 200 5.51x51 μ receptor 6DDE μ receptor 6DDE
TM5 201 5.52x52 μ receptor 6DDE NTS1 receptor 4XES
TM5 202 5.53x53 μ receptor 6DDE NTS1 receptor 4XES
TM5 203 5.54x54 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM5 204 5.55x55 μ receptor 6DDE - -
TM5 205 5.56x56 μ receptor 6DDE OX2 receptor 5WS3
TM5 206 5.57x57 μ receptor 6DDE 5-HT2B receptor 4IB4
TM5 207 5.58x58 μ receptor 6DDE μ receptor 6DDE
TM5 208 5.59x59 μ receptor 6DDE LPA6 receptor 5XSZ
TM5 209 5.60x60 μ receptor 6DDE A2A receptor 4UHR
TM5 210 5.61x61 μ receptor 6DDE 5-HT2B receptor 4IB4
TM5 211 5.62x62 μ receptor 6DDE FFA1 receptor 5TZY
TM5 212 5.63x63 μ receptor 6DDE PAR1 3VW7
TM5 213 5.64x64 μ receptor 6DDE LPA1 receptor 4Z35
TM5 214 5.65x65 μ receptor 6DDE μ receptor 6DDE
TM5 215 5.66x66 μ receptor 6DDE OX2 receptor 5WS3
TM5 216 5.67x67 μ receptor 6DDE A2A receptor 4UHR
TM5 217 5.68x68 μ receptor 6DDE C5a1 receptor 5O9H
TM5 218 5.69x69 Rhodopsin 5DYS NTS1 receptor 4XES
TM5 219 5.70x70 Rhodopsin 5DYS - -
TM5 220 5.71x71 Rhodopsin 5DYS - -
TM5 221 5.72x72 Rhodopsin 5DYS - -
ICL3 222 - - - -
ICL3 223 Rhodopsin 5DYS - -
ICL3 224 - - - -
TM6 225 6.24x24 μ receptor 6DDE - -
TM6 226 6.25x25 μ receptor 6DDE NTS1 receptor 4BUO
TM6 227 6.26x26 μ receptor 6DDE 5-HT2C receptor 6BQH
TM6 228 6.27x27 μ receptor 6DDE AT2 receptor 5UNG
TM6 229 6.28x28 μ receptor 6DDE μ receptor 6DDE
TM6 230 6.29x29 μ receptor 6DDE NTS1 receptor 4XES
TM6 231 6.30x30 μ receptor 6DDE PAR1 3VW7
TM6 232 6.31x31 μ receptor 6DDE μ receptor 6DDE
TM6 233 6.32x32 μ receptor 6DDE 5-HT1B receptor 4IAR
TM6 234 6.33x33 μ receptor 6DDE ETB receptor 5X93
TM6 235 6.34x34 μ receptor 6DDE μ receptor 6DDE
TM6 236 6.35x35 μ receptor 6DDE μ receptor 6DDE
TM6 237 6.36x36 μ receptor 6DDE μ receptor 6DDE
TM6 238 6.37x37 μ receptor 6DDE CCR5 5UIW
TM6 239 6.38x38 μ receptor 6DDE μ receptor 6DDE
TM6 240 6.39x39 μ receptor 6DDE 5-HT2B receptor 4IB4
TM6 241 6.40x40 μ receptor 6DDE μ receptor 6DDE
TM6 242 6.41x41 μ receptor 6DDE FFA1 receptor 5TZY
TM6 243 6.42x42 μ receptor 6DDE μ receptor 6DDE
TM6 244 6.43x43 μ receptor 6DDE 5-HT2B receptor 4IB4
TM6 245 6.44x44 μ receptor 6DDE μ receptor 6DDE
TM6 246 6.45x45 μ receptor 6DDE LPA6 receptor 5XSZ
TM6 247 6.46x46 μ receptor 6DDE 5-HT2B receptor 4IB4
TM6 248 6.47x47 μ receptor 6DDE NTS1 receptor 4XES
TM6 249 6.48x48 μ receptor 6DDE μ receptor 6DDE
TM6 250 6.49x49 μ receptor 6DDE apelin receptor 5VBL
TM6 251 6.50x50 μ receptor 6DDE μ receptor 6DDE
TM6 252 6.51x51 μ receptor 6DDE PAF receptor 5ZKQ
TM6 253 6.52x52 μ receptor 6DDE μ receptor 6DDE
TM6 254 6.53x53 μ receptor 6DDE FFA1 receptor 5TZY
TM6 255 6.54x54 μ receptor 6DDE PAR1 3VW7
TM6 256 6.55x55 μ receptor 6DDE κ receptor 4DJH
TM6 257 6.56x56 μ receptor 6DDE NTS1 receptor 4XES
TM6 258 6.57x57 μ receptor 6DDE - -
TM6 259 6.58x58 μ receptor 6DDE - -
TM6 260 6.59x59 μ receptor 6DDE - -
TM6 261 6.60x60 μ receptor 6DDE A2A receptor 4UHR
TM6 262 6.61x61 μ receptor 6DDE κ receptor 4DJH
ECL3 263 - - - -
ECL3 264 μ receptor 5C1M - -
ECL3 265 μ receptor 5C1M μ receptor 5C1M
ECL3 266 - - - -
TM7 267 7.28x27 κ receptor 6B73 PAR1 3VW7
TM7 268 7.29x28 κ receptor 6B73 US28 4XT1
TM7 269 7.30x29 μ receptor 6DDE PAR1 3VW7
TM7 270 7.31x30 μ receptor 6DDE - -
TM7 271 7.32x31 μ receptor 6DDE PAR1 3VW7
TM7 272 7.33x32 μ receptor 6DDE P2Y1 receptor 4XNW
TM7 273 7.34x33 μ receptor 6DDE 5-HT2B receptor 4IB4
TM7 274 7.35x34 μ receptor 6DDE FFA1 receptor 5TZY
TM7 275 7.36x35 μ receptor 6DDE PAR2 5NDD
TM7 276 7.37x36 μ receptor 6DDE NTS1 receptor 4XES
TM7 277 7.38x37 μ receptor 6DDE OX1 receptor 4ZJ8
TM7 278 7.39x38 μ receptor 6DDE OX1 receptor 4ZJ8
TM7 279 7.40x39 μ receptor 6DDE AT2 receptor 5UNG
TM7 280 7.41x40 μ receptor 6DDE PAR1 3VW7
TM7 281 7.42x41 μ receptor 6DDE PAR1 3VW7
TM7 282 7.43x42 μ receptor 6DDE μ receptor 6DDE
TM7 283 7.44x43 μ receptor 6DDE NTS1 receptor 4XES
TM7 284 7.45x45 μ receptor 6DDE μ receptor 6DDE
TM7 285 7.46x46 μ receptor 6DDE μ receptor 6DDE
TM7 286 7.47x47 μ receptor 6DDE μ receptor 6DDE
TM7 287 7.48x48 μ receptor 6DDE 5-HT2B receptor 4IB4
TM7 288 7.49x49 μ receptor 6DDE μ receptor 6DDE
TM7 289 7.50x50 μ receptor 6DDE μ receptor 6DDE
TM7 290 7.51x51 μ receptor 6DDE P2Y1 receptor 4XNW
TM7 291 7.52x52 μ receptor 6DDE 5-HT2B receptor 4IB4
TM7 292 7.53x53 μ receptor 6DDE μ receptor 6DDE
TM7 293 7.54x54 μ receptor 6DDE μ receptor 6DDE
TM7 294 7.55x55 κ receptor 4DJH 5-HT2B receptor 4IB4
TM7 295 7.56x56 κ receptor 4DJH PAR2 5NDD
H8 296 8.47x47 κ receptor 4DJH PAR2 5NDD
H8 297 8.48x48 κ receptor 4DJH 5-HT2B receptor 5TVN
H8 298 8.49x49 κ receptor 4DJH - -
H8 299 8.50x50 κ receptor 4DJH 5-HT2B receptor 4IB4
H8 300 8.51x51 κ receptor 4DJH 5-HT2B receptor 4IB4
H8 301 8.52x52 κ receptor 4DJH H1 receptor 3RZE
H8 302 8.53x53 κ receptor 4DJH - -
H8 303 8.54x54 κ receptor 4DJH 5-HT2B receptor 4IB4
H8 304 8.55x55 κ receptor 4DJH A2A receptor 4UHR
H8 305 8.56x56 κ receptor 4DJH Rhodopsin 5DYS
H8 306 8.57x57 κ receptor 4DJH A2A receptor 4UHR
H8 307 8.58x58 κ receptor 4DJH κ receptor 4DJH
H8 308 8.59x59 κ receptor 4DJH US28 4XT1
C-term 309 - - - -
C-term 310 - - - -
C-term 311 - - - -
C-term 312 - - - -
C-term 313 - - - -