GPR1 homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Inactive (Δ distance (Å): -1.48 docs)

VERSION

2018-07-10

MAIN TEMPLATE

C5a1 receptor (sequence similarity: 52%) PDB: 5O9H

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 80.1 9.1 10.8
Side-chains 26.9 49.5 23.6

Number of backbone templates: 5
Number of rotamer templates: 38

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5O9H
5C1M
4DKL
4YAY
5VBL
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 31 - - - -
N-term 32 - - - -
N-term 33 C5a1 receptor 5O9H C5a1 receptor 5O9H
N-term 34 C5a1 receptor 5O9H C5a1 receptor 5O9H
N-term 35 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM1 36 1.30x30 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM1 37 1.31x31 C5a1 receptor 5O9H LPA1 receptor 4Z35
TM1 38 1.32x32 C5a1 receptor 5O9H - -
TM1 39 1.33x33 C5a1 receptor 5O9H OX2 receptor 5WS3
TM1 40 1.34x34 C5a1 receptor 5O9H OX2 receptor 5WS3
TM1 41 1.35x35 C5a1 receptor 5O9H FFA1 receptor 5TZY
TM1 42 1.36x36 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM1 43 1.37x37 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM1 44 1.38x38 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM1 45 1.39x39 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM1 46 1.40x40 C5a1 receptor 5O9H ETB receptor 5X93
TM1 47 1.41x41 C5a1 receptor 5O9H CCR2 5T1A
TM1 48 1.42x42 C5a1 receptor 5O9H FFA1 receptor 5TZY
TM1 49 1.43x43 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM1 50 1.44x44 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM1 51 1.45x45 C5a1 receptor 5O9H apelin receptor 5VBL
TM1 52 1.46x46 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM1 53 1.47x47 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM1 54 1.48x48 C5a1 receptor 5O9H BLT1 receptor 5X33
TM1 55 1.49x49 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM1 56 1.50x50 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM1 57 1.51x51 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM1 58 1.52x52 C5a1 receptor 5O9H - -
TM1 59 1.53x53 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM1 60 1.54x54 C5a1 receptor 5O9H CXCR4 3ODU
TM1 61 1.55x55 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM1 62 1.56x56 C5a1 receptor 5O9H - -
TM1 63 1.57x57 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM1 64 1.58x58 C5a1 receptor 5O9H CXCR4 3ODU
TM1 65 1.59x59 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM1 66 1.60x60 C5a1 receptor 5O9H PAR1 3VW7
ICL1 67 C5a1 receptor 5O9H - -
ICL1 68 C5a1 receptor 5O9H C5a1 receptor 5O9H
ICL1 69 C5a1 receptor 5O9H - -
TM2 70 2.37x37 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM2 71 2.38x38 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM2 72 2.39x39 C5a1 receptor 5O9H μ receptor 4DKL
TM2 73 2.40x40 C5a1 receptor 5O9H LPA6 receptor 5XSZ
TM2 74 2.41x41 C5a1 receptor 5O9H BLT1 receptor 5X33
TM2 75 2.42x42 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM2 76 2.43x43 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM2 77 2.44x44 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM2 78 2.45x45 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM2 79 2.46x46 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM2 80 2.47x47 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM2 81 2.48x48 C5a1 receptor 5O9H CCR2 5T1A
TM2 82 2.49x49 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM2 83 2.50x50 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM2 84 2.51x51 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM2 85 2.52x52 C5a1 receptor 5O9H M3 receptor 4U15
TM2 86 2.53x53 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM2 87 2.54x54 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM2 88 2.55x55 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM2 89 2.56x56 C5a1 receptor 5O9H - -
TM2 90 2.57x57 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM2 91 2.58x58 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM2 92 2.59x59 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM2 93 2.60x60 C5a1 receptor 5O9H M4 receptor 5DSG
TM2 94 2.61x61 C5a1 receptor 5O9H H1 receptor 3RZE
TM2 95 2.62x62 C5a1 receptor 5O9H PAR1 3VW7
TM2 96 2.63x63 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM2 97 2.64x64 C5a1 receptor 5O9H - -
TM2 98 2.65x65 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM2 99 2.66x66 C5a1 receptor 5O9H AT1 receptor 4ZUD
ECL1 100 C5a1 receptor 5O9H - -
ECL1 101 - - - -
ECL1 102 23.49x49 C5a1 receptor 5O9H C5a1 receptor 5O9H
ECL1 103 23.50x50 C5a1 receptor 5O9H C5a1 receptor 5O9H
ECL1 104 23.51x51 C5a1 receptor 5O9H C5a1 receptor 5O9H
ECL1 105 23.52x52 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM3 106 3.21x21 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM3 107 3.22x22 C5a1 receptor 5O9H - -
TM3 108 3.23x23 C5a1 receptor 5O9H - -
TM3 109 3.24x24 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM3 110 3.25x25 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM3 111 3.26x26 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM3 112 3.27x27 C5a1 receptor 5O9H δ receptor 4N6H
TM3 113 3.28x28 C5a1 receptor 5O9H Y1 receptor 5ZBH
TM3 114 3.29x29 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM3 115 3.30x30 C5a1 receptor 5O9H Rhodopsin 1GZM
TM3 116 3.31x31 C5a1 receptor 5O9H - -
TM3 117 3.32x32 C5a1 receptor 5O9H Rhodopsin 1GZM
TM3 118 3.33x33 C5a1 receptor 5O9H - -
TM3 119 3.34x34 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM3 120 3.35x35 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM3 121 3.36x36 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM3 122 3.37x37 C5a1 receptor 5O9H μ receptor 4DKL
TM3 123 3.38x38 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM3 124 3.39x39 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM3 125 3.40x40 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM3 126 3.41x41 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM3 127 3.42x42 C5a1 receptor 5O9H CCR2 5T1A
TM3 128 3.43x43 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM3 129 3.44x44 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM3 130 3.45x45 C5a1 receptor 5O9H Rhodopsin 1GZM
TM3 131 3.46x46 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM3 132 3.47x47 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM3 133 3.48x48 C5a1 receptor 5O9H CXCR4 3ODU
TM3 134 3.49x49 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM3 135 3.50x50 C5a1 receptor 5O9H - -
TM3 136 3.51x51 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM3 137 3.52x52 C5a1 receptor 5O9H μ receptor 4DKL
TM3 138 3.53x53 C5a1 receptor 5O9H - -
TM3 139 3.54x54 C5a1 receptor 5O9H - -
TM3 140 3.55x55 C5a1 receptor 5O9H Y1 receptor 5ZBH
TM3 141 3.56x56 C5a1 receptor 5O9H AT1 receptor 4ZUD
ICL2 142 34.50x50 C5a1 receptor 5O9H C5a1 receptor 5O9H
ICL2 143 34.51x51 C5a1 receptor 5O9H μ receptor 4DKL
ICL2 144 34.52x52 C5a1 receptor 5O9H BLT1 receptor 5X33
ICL2 145 34.53x53 C5a1 receptor 5O9H BLT1 receptor 5X33
ICL2 146 34.54x54 C5a1 receptor 5O9H CCR9 5LWE
ICL2 147 34.55x55 C5a1 receptor 5O9H C5a1 receptor 5O9H
ICL2 148 34.56x56 C5a1 receptor 5O9H - -
ICL2 149 34.57x57 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM4 150 4.38x38 C5a1 receptor 5O9H μ receptor 4DKL
TM4 151 4.39x39 C5a1 receptor 5O9H CXCR4 3ODU
TM4 152 4.40x40 C5a1 receptor 5O9H OX2 receptor 5WS3
TM4 153 4.41x41 C5a1 receptor 5O9H μ receptor 4DKL
TM4 154 4.42x42 C5a1 receptor 5O9H CCR9 5LWE
TM4 155 4.43x43 C5a1 receptor 5O9H D4 receptor 5WIV
TM4 156 4.44x44 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM4 157 4.45x45 C5a1 receptor 5O9H μ receptor 4DKL
TM4 158 4.46x46 C5a1 receptor 5O9H OX2 receptor 5WS3
TM4 159 4.47x47 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM4 160 4.48x48 C5a1 receptor 5O9H Rhodopsin 1GZM
TM4 161 4.49x49 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM4 162 4.50x50 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM4 163 4.51x51 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM4 164 4.52x52 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM4 165 4.53x53 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM4 166 4.54x54 C5a1 receptor 5O9H μ receptor 4DKL
TM4 167 4.55x55 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM4 168 4.56x56 C5a1 receptor 5O9H μ receptor 4DKL
TM4 169 4.57x57 μ receptor 5C1M μ receptor 5C1M
TM4 170 4.58x58 μ receptor 5C1M S1P1 receptor 3V2Y
TM4 171 4.59x59 μ receptor 5C1M μ receptor 5C1M
TM4 172 4.60x60 C5a1 receptor 5O9H κ receptor 4DJH
TM4 173 4.61x61 C5a1 receptor 5O9H Rhodopsin 1GZM
TM4 174 4.62x62 C5a1 receptor 5O9H PAR2 5NDD
TM4 175 4.63x63 C5a1 receptor 5O9H M3 receptor 4U15
TM4 176 4.64x64 C5a1 receptor 5O9H - -
ECL2 177 - - - -
ECL2 178 μ receptor 5C1M μ receptor 5C1M
ECL2 179 μ receptor 5C1M - -
ECL2 180 μ receptor 5C1M - -
ECL2 181 μ receptor 5C1M - -
ECL2 182 μ receptor 5C1M - -
ECL2 183 μ receptor 5C1M - -
ECL2 184 μ receptor 5C1M - -
ECL2 185 μ receptor 5C1M - -
ECL2 186 - - - -
ECL2 187 45.50x50 C5a1 receptor 5O9H C5a1 receptor 5O9H
ECL2 188 45.51x51 C5a1 receptor 5O9H apelin receptor 5VBL
ECL2 189 45.52x52 C5a1 receptor 5O9H - -
ECL2 190 - - - -
ECL2 191 - - - -
ECL2 192 - - - -
ECL2 193 - - - -
ECL2 194 - - - -
ECL2 195 - - - -
ECL2 196 - - - -
ECL2 197 - - - -
ECL2 198 - - - -
ECL2 199 - - - -
ECL2 200 - - - -
ECL2 201 - - - -
TM5 202 5.34x35 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM5 203 5.35x36 C5a1 receptor 5O9H P2Y12 receptor 4NTJ
TM5 204 5.36x37 C5a1 receptor 5O9H - -
TM5 205 5.37x38 C5a1 receptor 5O9H δ receptor 4N6H
TM5 206 5.38x39 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM5 207 5.39x40 C5a1 receptor 5O9H CCR2 5T1A
TM5 208 5.40x41 C5a1 receptor 5O9H ETB receptor 5X93
TM5 209 5.41x42 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM5 210 5.42x43 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM5 211 5.43x44 C5a1 receptor 5O9H μ receptor 4DKL
TM5 212 5.44x45 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM5 213 5.45x46 C5a1 receptor 5O9H H1 receptor 3RZE
TM5 214 5.46x461 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM5 215 5.47x47 C5a1 receptor 5O9H OX2 receptor 5WS3
TM5 216 5.48x48 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM5 217 5.49x49 C5a1 receptor 5O9H NTS1 receptor 4BUO
TM5 218 5.50x50 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM5 219 5.51x51 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM5 220 5.52x52 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM5 221 5.53x53 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM5 222 5.54x54 C5a1 receptor 5O9H CCR2 5T1A
TM5 223 5.55x55 C5a1 receptor 5O9H NOP receptor 5DHG
TM5 224 5.56x56 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM5 225 5.57x57 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM5 226 5.58x58 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM5 227 5.59x59 C5a1 receptor 5O9H OX2 receptor 5WS3
TM5 228 5.60x60 C5a1 receptor 5O9H - -
TM5 229 5.61x61 C5a1 receptor 5O9H Rhodopsin 1GZM
TM5 230 5.62x62 C5a1 receptor 5O9H μ receptor 4DKL
TM5 231 5.63x63 C5a1 receptor 5O9H Rhodopsin 1GZM
TM5 232 5.64x64 C5a1 receptor 5O9H CXCR4 3ODU
TM5 233 5.65x65 C5a1 receptor 5O9H Rhodopsin 1GZM
TM5 234 5.66x66 C5a1 receptor 5O9H κ receptor 4DJH
TM5 235 5.67x67 C5a1 receptor 5O9H A1 receptor 5UEN
TM5 236 5.68x68 C5a1 receptor 5O9H C5a1 receptor 6C1R
ICL3 237 - - - -
ICL3 238 - - - -
ICL3 239 - - - -
ICL3 240 - - - -
TM6 241 6.30x30 AT1 receptor 4YAY C5a1 receptor 6C1R
TM6 242 6.31x31 C5a1 receptor 5O9H - -
TM6 243 6.32x32 C5a1 receptor 5O9H μ receptor 4DKL
TM6 244 6.33x33 C5a1 receptor 5O9H - -
TM6 245 6.34x34 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM6 246 6.35x35 C5a1 receptor 5O9H - -
TM6 247 6.36x36 C5a1 receptor 5O9H CXCR4 3ODU
TM6 248 6.37x37 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM6 249 6.38x38 C5a1 receptor 5O9H μ receptor 4DKL
TM6 250 6.39x39 C5a1 receptor 5O9H μ receptor 4DKL
TM6 251 6.40x40 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM6 252 6.41x41 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM6 253 6.42x42 C5a1 receptor 5O9H apelin receptor 5VBL
TM6 254 6.43x43 C5a1 receptor 5O9H δ receptor 4N6H
TM6 255 6.44x44 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM6 256 6.45x45 C5a1 receptor 5O9H κ receptor 4DJH
TM6 257 6.46x46 C5a1 receptor 5O9H μ receptor 4DKL
TM6 258 6.47x47 C5a1 receptor 5O9H μ receptor 4DKL
TM6 259 6.48x48 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM6 260 6.49x49 C5a1 receptor 5O9H μ receptor 4DKL
TM6 261 6.50x50 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM6 262 6.51x51 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM6 263 6.52x52 C5a1 receptor 5O9H μ receptor 4DKL
TM6 264 6.53x53 C5a1 receptor 5O9H apelin receptor 5VBL
TM6 265 6.54x54 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM6 266 6.55x55 C5a1 receptor 5O9H 5-HT1B receptor 4IAQ
TM6 267 6.56x56 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM6 268 6.57x57 C5a1 receptor 5O9H - -
TM6 269 6.58x58 C5a1 receptor 5O9H κ receptor 4DJH
TM6 270 6.59x59 C5a1 receptor 5O9H ETB receptor 5X93
TM6 271 6.60x60 C5a1 receptor 5O9H Rhodopsin 1GZM
TM6 272 6.61x61 C5a1 receptor 5O9H μ receptor 4DKL
ECL3 273 - - - -
ECL3 274 - - - -
ECL3 275 - - - -
ECL3 276 - - - -
ECL3 277 - - - -
ECL3 278 - - - -
TM7 279 7.28x27 C5a1 receptor 5O9H PAF receptor 5ZKP
TM7 280 7.29x28 C5a1 receptor 5O9H - -
TM7 281 7.30x29 C5a1 receptor 5O9H AT2 receptor 5UNG
TM7 282 7.31x30 C5a1 receptor 5O9H 5-HT2C receptor 6BQH
TM7 283 7.32x31 C5a1 receptor 5O9H 5-HT2B receptor 4IB4
TM7 284 7.33x32 C5a1 receptor 5O9H δ receptor 4N6H
TM7 285 7.34x33 C5a1 receptor 5O9H - -
TM7 286 7.35x34 C5a1 receptor 5O9H CXCR4 3ODU
TM7 287 7.36x35 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM7 288 7.37x36 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM7 289 7.38x37 C5a1 receptor 5O9H OX2 receptor 5WS3
TM7 290 7.39x38 C5a1 receptor 5O9H NOP receptor 5DHG
TM7 291 7.40x39 C5a1 receptor 5O9H P2Y1 receptor 4XNW
TM7 292 7.41x40 C5a1 receptor 5O9H μ receptor 4DKL
TM7 293 7.42x41 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM7 294 7.43x42 C5a1 receptor 5O9H CXCR4 3ODU
TM7 295 7.44x43 C5a1 receptor 5O9H BLT1 receptor 5X33
TM7 296 7.45x45 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM7 297 7.46x46 C5a1 receptor 5O9H μ receptor 4DKL
TM7 298 7.47x47 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM7 299 7.48x48 C5a1 receptor 5O9H AT1 receptor 4ZUD
TM7 300 7.49x49 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM7 301 7.50x50 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM7 302 7.51x51 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM7 303 7.52x52 C5a1 receptor 5O9H μ receptor 4DKL
TM7 304 7.53x53 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM7 305 7.54x54 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM7 306 7.55x55 C5a1 receptor 5O9H M3 receptor 4U15
TM7 307 7.56x56 C5a1 receptor 5O9H - -
H8 308 8.47x47 μ receptor 4DKL OX2 receptor 5WS3
H8 309 8.48x48 μ receptor 4DKL Rhodopsin 1GZM
H8 310 8.49x49 μ receptor 4DKL CCR2 5T1A
H8 311 8.50x50 μ receptor 4DKL μ receptor 4DKL
H8 312 8.51x51 μ receptor 4DKL Y1 receptor 5ZBH
H8 313 8.52x52 μ receptor 4DKL NOP receptor 5DHG
H8 314 8.53x53 μ receptor 4DKL - -
H8 315 8.54x54 μ receptor 4DKL μ receptor 4DKL
H8 316 8.55x55 μ receptor 4DKL δ receptor 4RWD
H8 317 8.56x56 μ receptor 4DKL apelin receptor 5VBL
H8 318 8.57x57 μ receptor 4DKL - -
H8 319 8.58x58 μ receptor 4DKL - -
H8 320 8.59x59 μ receptor 4DKL US28 4XT1
H8 321 8.60x60 apelin receptor 5VBL US28 4XT1
H8 322 8.61x61 apelin receptor 5VBL - -
C-term 323 - - - -
C-term 324 - - - -
C-term 325 - - - -
C-term 326 - - - -
C-term 327 - - - -