GPR34 homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Active (Δ distance (Å): 15.34 docs)

VERSION

2018-07-10

MAIN TEMPLATE

PAF receptor (sequence similarity: 52%) PDB: 5ZKP

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 77.3 6.1 16.5
Side-chains 23.3 44.0 32.7

Number of backbone templates: 7
Number of rotamer templates: 35

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5ZKQ
5ZKP
4XNW
4N6H
6B73
5LWE
4XES
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 44 - - - -
N-term 45 - - - -
N-term 46 - - - -
N-term 47 - - - -
N-term 48 - - - -
TM1 49 1.27x27 PAF receptor 5ZKQ - -
TM1 50 1.28x28 PAF receptor 5ZKP Rhodopsin 5DYS
TM1 51 1.29x29 PAF receptor 5ZKP PAR2 5NDD
TM1 52 1.30x30 PAF receptor 5ZKP PAR2 5NDD
TM1 53 1.31x31 PAF receptor 5ZKP PAR1 3VW7
TM1 54 1.32x32 PAF receptor 5ZKP CCR9 5LWE
TM1 55 1.33x33 PAF receptor 5ZKP PAF receptor 5ZKP
TM1 56 1.34x34 PAF receptor 5ZKP US28 4XT1
TM1 57 1.35x35 PAF receptor 5ZKP Rhodopsin 5DYS
TM1 58 1.36x36 PAF receptor 5ZKP κ receptor 6B73
TM1 59 1.37x37 PAF receptor 5ZKP A2A receptor 5G53
TM1 60 1.38x38 PAF receptor 5ZKP D3 receptor 3PBL
TM1 61 1.39x39 PAF receptor 5ZKP PAF receptor 5ZKP
TM1 62 1.40x40 PAF receptor 5ZKP PAF receptor 5ZKP
TM1 63 1.41x41 PAF receptor 5ZKP κ receptor 6B73
TM1 64 1.42x42 PAF receptor 5ZKP PAF receptor 5ZKP
TM1 65 1.43x43 PAF receptor 5ZKP PAF receptor 5ZKP
TM1 66 1.44x44 PAF receptor 5ZKP 5-HT2C receptor 6BQG
TM1 67 1.45x45 PAF receptor 5ZKP κ receptor 6B73
TM1 68 1.46x46 PAF receptor 5ZKP PAF receptor 5ZKP
TM1 69 1.47x47 PAF receptor 5ZKP κ receptor 6B73
TM1 70 1.48x48 PAF receptor 5ZKP κ receptor 6B73
TM1 71 1.49x49 PAF receptor 5ZKP κ receptor 6B73
TM1 72 1.50x50 PAF receptor 5ZKP PAF receptor 5ZKP
TM1 73 1.51x51 PAF receptor 5ZKP AT2 receptor 5UNG
TM1 74 1.52x52 PAF receptor 5ZKP - -
TM1 75 1.53x53 PAF receptor 5ZKP LPA6 receptor 5XSZ
TM1 76 1.54x54 PAF receptor 5ZKP PAF receptor 5ZKP
TM1 77 1.55x55 PAF receptor 5ZKP LPA6 receptor 5XSZ
TM1 78 1.56x56 PAF receptor 5ZKP PAF receptor 5ZKP
TM1 79 1.57x57 PAF receptor 5ZKP PAF receptor 5ZKP
TM1 80 1.58x58 PAF receptor 5ZKP CB1 receptor 5XRA
TM1 81 1.59x59 PAF receptor 5ZKP - -
TM1 82 1.60x60 PAF receptor 5ZKP - -
TM1 83 1.61x61 PAF receptor 5ZKP - -
ICL1 84 - - - -
ICL1 85 - - - -
ICL1 86 - - - -
TM2 87 2.37x37 PAF receptor 5ZKP PAF receptor 5ZKP
TM2 88 2.38x38 PAF receptor 5ZKP US28 4XT1
TM2 89 2.39x39 PAF receptor 5ZKP PAF receptor 5ZKP
TM2 90 2.40x40 PAF receptor 5ZKP - -
TM2 91 2.41x41 PAF receptor 5ZKP PAF receptor 5ZKP
TM2 92 2.42x42 PAF receptor 5ZKP κ receptor 6B73
TM2 93 2.43x43 PAF receptor 5ZKP 5-HT2C receptor 6BQG
TM2 94 2.44x44 PAF receptor 5ZKP Rhodopsin 5DYS
TM2 95 2.45x45 PAF receptor 5ZKP PAF receptor 5ZKP
TM2 96 2.46x46 PAF receptor 5ZKP - -
TM2 97 2.47x47 PAF receptor 5ZKP κ receptor 6B73
TM2 98 2.48x48 PAF receptor 5ZKP 5-HT2C receptor 6BQG
TM2 99 2.49x49 PAF receptor 5ZKP PAF receptor 5ZKP
TM2 100 2.50x50 PAF receptor 5ZKP PAF receptor 5ZKP
TM2 101 2.51x51 PAF receptor 5ZKP LPA6 receptor 5XSZ
TM2 102 2.52x52 PAF receptor 5ZKP PAF receptor 5ZKP
TM2 103 2.53x53 PAF receptor 5ZKP AT2 receptor 5UNG
TM2 104 2.54x54 PAF receptor 5ZKP P2Y12 receptor 4NTJ
TM2 105 2.55x55 PAF receptor 5ZKP Rhodopsin 5DYS
TM2 106 2.56x56 PAF receptor 5ZKP OX2 receptor 5WS3
TM2 107 2.57x57 PAF receptor 5ZKP PAF receptor 5ZKP
TM2 108 2.58x58 PAF receptor 5ZKP PAF receptor 5ZKP
TM2 109 2.59x59 PAF receptor 5ZKP κ receptor 6B73
TM2 110 2.60x60 PAF receptor 5ZKP LPA6 receptor 5XSZ
TM2 111 2.61x61 PAF receptor 5ZKP PAF receptor 5ZKP
TM2 112 2.62x62 PAF receptor 5ZKP 5-HT1B receptor 4IAQ
TM2 113 2.63x63 PAF receptor 5ZKP PAF receptor 5ZKP
TM2 114 2.64x64 PAF receptor 5ZKP PAR2 5NDD
TM2 115 2.65x65 PAF receptor 5ZKP NTS1 receptor 5T04
TM2 116 2.66x66 PAF receptor 5ZKP PAF receptor 5ZKP
TM2 117 2.67x67 PAF receptor 5ZKP PAF receptor 5ZKP
ECL1 118 PAF receptor 5ZKP - -
ECL1 119 23.49x49 PAF receptor 5ZKP H1 receptor 3RZE
ECL1 120 23.50x50 PAF receptor 5ZKP PAF receptor 5ZKP
ECL1 121 23.51x51 PAF receptor 5ZKP β2-adrenoceptor 3SN6
ECL1 122 23.52x52 PAF receptor 5ZKP PAF receptor 5ZKP
TM3 123 3.21x21 PAF receptor 5ZKP κ receptor 6B73
TM3 124 3.22x22 PAF receptor 5ZKP LPA1 receptor 4Z35
TM3 125 3.23x23 PAF receptor 5ZKP μ receptor 5C1M
TM3 126 3.24x24 PAF receptor 5ZKP PAF receptor 5ZKP
TM3 127 3.25x25 PAF receptor 5ZKP PAF receptor 5ZKP
TM3 128 3.26x26 PAF receptor 5ZKP κ receptor 6B73
TM3 129 3.27x27 PAF receptor 5ZKP PAF receptor 5ZKP
TM3 130 3.28x28 PAF receptor 5ZKP κ receptor 6B73
TM3 131 3.29x29 PAF receptor 5ZKP PAF receptor 5ZKP
TM3 132 3.30x30 PAF receptor 5ZKP D2 receptor 6CM4
TM3 133 3.31x31 PAF receptor 5ZKP PAF receptor 5ZKP
TM3 134 3.32x32 PAF receptor 5ZKP PAF receptor 5ZKP
TM3 135 3.33x33 PAF receptor 5ZKP κ receptor 6B73
TM3 136 3.34x34 PAF receptor 5ZKP CCR9 5LWE
TM3 137 3.35x35 PAF receptor 5ZKP PAF receptor 5ZKP
TM3 138 3.36x36 PAF receptor 5ZKP κ receptor 6B73
TM3 139 3.37x37 PAF receptor 5ZKP PAF receptor 5ZKP
TM3 140 3.38x38 PAF receptor 5ZKP Rhodopsin 5DYS
TM3 141 3.39x39 PAF receptor 5ZKP PAF receptor 5ZKP
TM3 142 3.40x40 PAF receptor 5ZKP κ receptor 6B73
TM3 143 3.41x41 PAF receptor 5ZKP - -
TM3 144 3.42x42 PAF receptor 5ZKP PAR1 3VW7
TM3 145 3.43x43 PAF receptor 5ZKP PAF receptor 5ZKP
TM3 146 3.44x44 PAF receptor 5ZKP PAF receptor 5ZKP
TM3 147 3.45x45 PAF receptor 5ZKP CXCR4 3ODU
TM3 148 3.46x46 PAF receptor 5ZKP PAF receptor 5ZKP
TM3 149 3.47x47 PAF receptor 5ZKP κ receptor 6B73
TM3 150 3.48x48 PAF receptor 5ZKP 5-HT2C receptor 6BQG
TM3 151 3.49x49 PAF receptor 5ZKP κ receptor 6B73
TM3 152 3.50x50 PAF receptor 5ZKP PAF receptor 5ZKP
TM3 153 3.51x51 PAF receptor 5ZKP PAF receptor 5ZKP
TM3 154 3.52x52 PAF receptor 5ZKP κ receptor 6B73
TM3 155 3.53x53 PAF receptor 5ZKP P2Y12 receptor 4NTJ
TM3 156 3.54x54 PAF receptor 5ZKP LPA6 receptor 5XSZ
TM3 157 3.55x55 PAF receptor 5ZKP - -
TM3 158 3.56x56 PAF receptor 5ZKQ PAF receptor 5ZKQ
ICL2 159 34.50x50 - - - -
ICL2 160 34.51x51 - - - -
ICL2 161 34.52x52 - - - -
ICL2 162 34.53x53 - - - -
ICL2 163 34.54x54 - - - -
ICL2 164 34.55x55 - - - -
ICL2 165 34.56x56 - - - -
ICL2 166 34.57x57 - - - -
TM4 167 4.38x38 - - - -
TM4 168 4.39x39 - - - -
TM4 169 4.40x40 - - - -
TM4 170 4.41x41 - - - -
TM4 171 4.42x42 - - - -
TM4 172 4.43x43 - - - -
TM4 173 4.44x44 - - - -
TM4 174 4.45x45 - - - -
TM4 175 4.46x46 - - - -
TM4 176 4.47x47 - - - -
TM4 177 4.48x48 - - - -
TM4 178 4.49x49 PAF receptor 5ZKP LPA6 receptor 5XSZ
TM4 179 4.50x50 PAF receptor 5ZKP PAF receptor 5ZKP
TM4 180 4.51x51 PAF receptor 5ZKP - -
TM4 181 4.52x52 PAF receptor 5ZKP κ receptor 6B73
TM4 182 4.53x53 PAF receptor 5ZKP AT2 receptor 5UNG
TM4 183 4.54x54 PAF receptor 5ZKP LPA6 receptor 5XSZ
TM4 184 4.55x55 PAF receptor 5ZKP PAF receptor 5ZKP
TM4 185 4.56x56 PAF receptor 5ZKP LPA6 receptor 5XSZ
TM4 186 4.57x57 PAF receptor 5ZKP - -
TM4 187 4.58x58 PAF receptor 5ZKP LPA6 receptor 5XSZ
TM4 188 4.59x59 PAF receptor 5ZKP A1 receptor 6D9H
TM4 189 4.60x60 PAF receptor 5ZKP - -
TM4 190 4.61x61 PAF receptor 5ZKP κ receptor 6B73
TM4 191 4.62x62 PAF receptor 5ZKP PAF receptor 5ZKP
TM4 192 4.63x63 PAF receptor 5ZKP PAF receptor 5ZKP
ECL2 193 - - - -
ECL2 194 - - - -
ECL2 195 - - - -
ECL2 196 - - - -
ECL2 197 - - - -
ECL2 198 - - - -
ECL2 199 - - - -
ECL2 200 - - - -
ECL2 201 - - - -
ECL2 202 - - - -
ECL2 203 - - - -
ECL2 204 45.50x50 PAF receptor 5ZKP PAF receptor 5ZKP
ECL2 205 45.51x51 PAF receptor 5ZKP PAF receptor 5ZKP
ECL2 206 45.52x52 PAF receptor 5ZKP - -
ECL2 207 - - - -
ECL2 208 - - - -
ECL2 209 - - - -
ECL2 210 - - - -
ECL2 211 - - - -
ECL2 212 - - - -
TM5 213 5.33x33 PAF receptor 5ZKQ - -
TM5 214 5.34x34 PAF receptor 5ZKQ - -
TM5 215 5.35x35 PAF receptor 5ZKP - -
TM5 216 5.36x36 PAF receptor 5ZKP μ receptor 5C1M
TM5 217 5.37x37 PAF receptor 5ZKP AT2 receptor 5UNG
TM5 218 5.38x38 PAF receptor 5ZKP PAF receptor 5ZKP
TM5 219 5.39x39 PAF receptor 5ZKP 5-HT2C receptor 6BQG
TM5 220 5.40x40 PAF receptor 5ZKP US28 4XT1
TM5 221 5.41x41 PAF receptor 5ZKP M2 receptor 4MQT
TM5 222 5.42x42 PAF receptor 5ZKP 5-HT2C receptor 6BQG
TM5 223 5.43x43 PAF receptor 5ZKP US28 4XT1
TM5 224 5.44x44 PAF receptor 5ZKP PAF receptor 5ZKP
TM5 225 5.45x45 PAF receptor 5ZKP Rhodopsin 5DYS
TM5 226 5.46x46 PAF receptor 5ZKP NTS1 receptor 5T04
TM5 227 5.47x47 PAF receptor 5ZKP PAF receptor 5ZKP
TM5 228 5.48x48 PAF receptor 5ZKP P2Y12 receptor 4NTJ
TM5 229 5.49x49 PAF receptor 5ZKP PAF receptor 5ZKP
TM5 230 5.50x50 PAF receptor 5ZKP - -
TM5 231 5.51x51 PAF receptor 5ZKP PAF receptor 5ZKP
TM5 232 5.52x52 PAF receptor 5ZKP PAF receptor 5ZKP
TM5 233 5.53x53 PAF receptor 5ZKP LPA6 receptor 5XSZ
TM5 234 5.54x54 PAF receptor 5ZKP PAF receptor 5ZKP
TM5 235 5.55x55 PAF receptor 5ZKP κ receptor 6B73
TM5 236 5.56x56 PAF receptor 5ZKP A1 receptor 6D9H
TM5 237 5.57x57 PAF receptor 5ZKP AT1 receptor 4ZUD
TM5 238 5.58x58 PAF receptor 5ZKP κ receptor 6B73
TM5 239 5.59x59 PAF receptor 5ZKP D2 receptor 6CM4
TM5 240 5.60x60 PAF receptor 5ZKP H1 receptor 3RZE
TM5 241 5.61x61 PAF receptor 5ZKP PAF receptor 5ZKP
TM5 242 5.62x62 PAF receptor 5ZKP - -
TM5 243 5.63x63 PAF receptor 5ZKP AT2 receptor 5UNG
TM5 244 5.64x64 PAF receptor 5ZKP - -
TM5 245 5.65x65 PAF receptor 5ZKP PAF receptor 5ZKP
TM5 246 5.66x66 PAF receptor 5ZKP PAF receptor 5ZKP
TM5 247 5.67x67 P2Y1 receptor 4XNW 5-HT2C receptor 6BQG
TM5 248 5.68x68 P2Y1 receptor 4XNW - -
ICL3 249 - - - -
ICL3 250 δ receptor 4N6H - -
ICL3 251 δ receptor 4N6H - -
ICL3 252 δ receptor 4N6H - -
ICL3 253 - - - -
TM6 254 6.23x23 κ receptor 6B73 - -
TM6 255 6.24x24 κ receptor 6B73 - -
TM6 256 6.25x25 κ receptor 6B73 - -
TM6 257 6.26x26 κ receptor 6B73 AT2 receptor 5UNG
TM6 258 6.27x27 κ receptor 6B73 PAR2 5NDD
TM6 259 6.28x28 PAF receptor 5ZKP A1 receptor 6D9H
TM6 260 6.29x29 PAF receptor 5ZKP β2-adrenoceptor 4LDE
TM6 261 6.30x30 PAF receptor 5ZKP - -
TM6 262 6.31x31 PAF receptor 5ZKP - -
TM6 263 6.32x32 PAF receptor 5ZKP - -
TM6 264 6.33x33 PAF receptor 5ZKP OX2 receptor 5WS3
TM6 265 6.34x34 PAF receptor 5ZKP A1 receptor 6D9H
TM6 266 6.35x35 PAF receptor 5ZKP κ receptor 6B73
TM6 267 6.36x36 PAF receptor 5ZKP - -
TM6 268 6.37x37 PAF receptor 5ZKP - -
TM6 269 6.38x38 PAF receptor 5ZKP CCR5 5UIW
TM6 270 6.39x39 PAF receptor 5ZKP 5-HT2C receptor 6BQG
TM6 271 6.40x40 PAF receptor 5ZKP κ receptor 6B73
TM6 272 6.41x41 PAF receptor 5ZKP LPA6 receptor 5XSZ
TM6 273 6.42x42 PAF receptor 5ZKP NTS1 receptor 5T04
TM6 274 6.43x43 PAF receptor 5ZKP LPA6 receptor 5XSZ
TM6 275 6.44x44 PAF receptor 5ZKP κ receptor 6B73
TM6 276 6.45x45 PAF receptor 5ZKP β2-adrenoceptor 3SN6
TM6 277 6.46x46 CCR9 5LWE PAF receptor 5ZKP
TM6 278 6.47x47 CCR9 5LWE PAF receptor 5ZKP
TM6 279 6.48x48 PAF receptor 5ZKP PAF receptor 5ZKP
TM6 280 6.49x49 PAF receptor 5ZKP PAF receptor 5ZKP
TM6 281 6.50x50 PAF receptor 5ZKP PAF receptor 5ZKP
TM6 282 6.51x51 PAF receptor 5ZKP LPA6 receptor 5XSZ
TM6 283 6.52x52 PAF receptor 5ZKP PAF receptor 5ZKP
TM6 284 6.53x53 PAF receptor 5ZKP CB1 receptor 5XRA
TM6 285 6.54x54 PAF receptor 5ZKP κ receptor 6B73
TM6 286 6.55x55 PAF receptor 5ZKP NTS1 receptor 5T04
TM6 287 6.56x56 PAF receptor 5ZKP AT2 receptor 5UNG
TM6 288 6.57x57 PAF receptor 5ZKP μ receptor 5C1M
TM6 289 6.58x58 PAF receptor 5ZKP LPA6 receptor 5XSZ
TM6 290 6.59x59 PAF receptor 5ZKP D2 receptor 6CM4
TM6 291 6.60x60 PAF receptor 5ZKP PAR1 3VW7
TM6 292 6.61x61 PAF receptor 5ZKP P2Y12 receptor 4PXZ
ECL3 293 - - - -
ECL3 294 NTS1 receptor 4XES - -
ECL3 295 NTS1 receptor 4XES - -
ECL3 296 NTS1 receptor 4XES - -
ECL3 297 - - - -
TM7 298 7.24x23 PAF receptor 5ZKP AT2 receptor 5UNG
TM7 299 7.25x24 PAF receptor 5ZKP LPA6 receptor 5XSZ
TM7 300 7.26x25 PAF receptor 5ZKP - -
TM7 301 7.27x26 PAF receptor 5ZKP - -
TM7 302 7.28x27 PAF receptor 5ZKP - -
TM7 303 7.29x28 PAF receptor 5ZKP PAR1 3VW7
TM7 304 7.30x29 PAF receptor 5ZKP AT1 receptor 4ZUD
TM7 305 7.31x30 PAF receptor 5ZKP LPA6 receptor 5XSZ
TM7 306 7.32x31 PAF receptor 5ZKP NTS1 receptor 5T04
TM7 307 7.33x32 PAF receptor 5ZKP CXCR4 3ODU
TM7 308 7.34x33 PAF receptor 5ZKP P2Y1 receptor 4XNW
TM7 309 7.35x34 PAF receptor 5ZKP - -
TM7 310 7.36x35 PAF receptor 5ZKP 5-HT2B receptor 5TUD
TM7 311 7.37x36 PAF receptor 5ZKP LPA6 receptor 5XSZ
TM7 312 7.38x37 PAF receptor 5ZKP - -
TM7 313 7.39x38 PAF receptor 5ZKP PAF receptor 5ZKP
TM7 314 7.40x39 PAF receptor 5ZKP A2A receptor 5G53
TM7 315 7.41x40 PAF receptor 5ZKP PAF receptor 5ZKP
TM7 316 7.42x41 PAF receptor 5ZKP A2A receptor 5G53
TM7 317 7.43x42 PAF receptor 5ZKP PAF receptor 5ZKP
TM7 318 7.44x43 PAF receptor 5ZKP CCR9 5LWE
TM7 319 7.45x45 PAF receptor 5ZKP PAF receptor 5ZKP
TM7 320 7.46x46 PAF receptor 5ZKP κ receptor 6B73
TM7 321 7.47x47 PAF receptor 5ZKP LPA6 receptor 5XSZ
TM7 322 7.48x48 PAF receptor 5ZKP PAF receptor 5ZKP
TM7 323 7.49x49 PAF receptor 5ZKP LPA6 receptor 5XSZ
TM7 324 7.50x50 PAF receptor 5ZKP PAF receptor 5ZKP
TM7 325 7.51x51 PAF receptor 5ZKP PAF receptor 5ZKP
TM7 326 7.52x52 PAF receptor 5ZKP - -
TM7 327 7.53x53 PAF receptor 5ZKP PAF receptor 5ZKP
TM7 328 7.54x54 PAF receptor 5ZKP P2Y1 receptor 4XNW
TM7 329 7.55x55 PAF receptor 5ZKP 5-HT2C receptor 6BQG
TM7 330 7.56x56 PAF receptor 5ZKP Rhodopsin 5DYS
TM7 331 7.57x57 PAF receptor 5ZKP - -
TM7 332 7.58x58 PAF receptor 5ZKP - -
TM7 333 7.59x59 PAF receptor 5ZKP - -
H8 334 8.50x50 PAF receptor 5ZKP - -
H8 335 8.51x51 PAF receptor 5ZKP PAF receptor 5ZKP
H8 336 8.52x52 PAF receptor 5ZKP H1 receptor 3RZE
H8 337 8.53x53 PAF receptor 5ZKP - -
H8 338 8.54x54 PAF receptor 5ZKP Rhodopsin 5DYS
H8 339 8.55x55 PAF receptor 5ZKP - -
H8 340 8.56x56 PAF receptor 5ZKP LPA1 receptor 4Z36
H8 341 8.57x57 PAF receptor 5ZKP US28 4XT1
H8 342 8.58x58 PAF receptor 5ZKP 5-HT2C receptor 6BQG
H8 343 8.59x59 PAF receptor 5ZKP κ receptor 4DJH
H8 344 8.60x60 PAF receptor 5ZKP - -
H8 345 8.61x61 PAF receptor 5ZKP - -
H8 346 8.62x62 PAF receptor 5ZKP A1 receptor 5UEN
H8 347 8.63x63 PAF receptor 5ZKP - -
C-term 348 PAF receptor 5ZKP PAF receptor 5ZKP
C-term 349 PAF receptor 5ZKP PAF receptor 5ZKP
C-term 350 - - - -
C-term 351 - - - -
C-term 352 - - - -