GPR55 homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Inactive (Δ distance (Å): -1.4 docs)

VERSION

2018-07-10

MAIN TEMPLATE

μ receptor (sequence similarity: 41%) PDB: 4DKL

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 77.1 9.8 13.1
Side-chains 18.9 52.9 28.3

Number of backbone templates: 3
Number of rotamer templates: 40

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4DKL
5XSZ
5UNG
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 13 - - - -
N-term 14 - - - -
N-term 15 - - - -
N-term 16 - - - -
N-term 17 - - - -
TM1 18 1.30x30 μ receptor 4DKL PAR2 5NDD
TM1 19 1.31x31 μ receptor 4DKL Y1 receptor 5ZBH
TM1 20 1.32x32 μ receptor 4DKL NOP receptor 5DHG
TM1 21 1.33x33 μ receptor 4DKL PAF receptor 5ZKP
TM1 22 1.34x34 μ receptor 4DKL CCR5 5UIW
TM1 23 1.35x35 μ receptor 4DKL - -
TM1 24 1.36x36 μ receptor 4DKL FFA1 receptor 5TZY
TM1 25 1.37x37 μ receptor 4DKL μ receptor 4DKL
TM1 26 1.38x38 μ receptor 4DKL κ receptor 4DJH
TM1 27 1.39x39 μ receptor 4DKL - -
TM1 28 1.40x40 μ receptor 4DKL OX2 receptor 5WS3
TM1 29 1.41x41 μ receptor 4DKL - -
TM1 30 1.42x42 μ receptor 4DKL - -
TM1 31 1.43x43 μ receptor 4DKL κ receptor 4DJH
TM1 32 1.44x44 μ receptor 4DKL μ receptor 4DKL
TM1 33 1.45x45 μ receptor 4DKL ETB receptor 5X93
TM1 34 1.46x46 μ receptor 4DKL μ receptor 4DKL
TM1 35 1.47x47 μ receptor 4DKL μ receptor 4DKL
TM1 36 1.48x48 μ receptor 4DKL NOP receptor 5DHG
TM1 37 1.49x49 μ receptor 4DKL H1 receptor 3RZE
TM1 38 1.50x50 μ receptor 4DKL μ receptor 4DKL
TM1 39 1.51x51 μ receptor 4DKL Y1 receptor 5ZBH
TM1 40 1.52x52 μ receptor 4DKL μ receptor 4DKL
TM1 41 1.53x53 μ receptor 4DKL LPA6 receptor 5XSZ
TM1 42 1.54x54 μ receptor 4DKL CCR5 5UIW
TM1 43 1.55x55 μ receptor 4DKL - -
TM1 44 1.56x56 μ receptor 4DKL δ receptor 4N6H
TM1 45 1.57x57 μ receptor 4DKL M1 receptor 5CXV
TM1 46 1.58x58 μ receptor 4DKL 5-HT2C receptor 6BQH
TM1 47 1.59x59 μ receptor 4DKL D4 receptor 5WIV
TM1 48 1.60x60 μ receptor 4DKL β2-adrenoceptor 5JQH
ICL1 49 - - - -
ICL1 50 - - - -
ICL1 51 - - - -
ICL1 52 - - - -
ICL1 53 - - - -
ICL1 54 - - - -
ICL1 55 - - - -
ICL1 56 - - - -
TM2 57 2.37x37 μ receptor 4DKL PAR2 5NDD
TM2 58 2.38x38 μ receptor 4DKL μ receptor 4DKL
TM2 59 2.39x39 μ receptor 4DKL μ receptor 4DKL
TM2 60 2.40x40 μ receptor 4DKL AT1 receptor 4ZUD
TM2 61 2.41x41 μ receptor 4DKL μ receptor 4DKL
TM2 62 2.42x42 μ receptor 4DKL μ receptor 4DKL
TM2 63 2.43x43 μ receptor 4DKL LPA1 receptor 4Z35
TM2 64 2.44x44 μ receptor 4DKL US28 4XT1
TM2 65 2.45x45 μ receptor 4DKL μ receptor 4DKL
TM2 66 2.46x46 μ receptor 4DKL μ receptor 4DKL
TM2 67 2.47x47 μ receptor 4DKL μ receptor 4DKL
TM2 68 2.48x48 μ receptor 4DKL CXCR4 3ODU
TM2 69 2.49x49 μ receptor 4DKL - -
TM2 70 2.50x50 μ receptor 4DKL μ receptor 4DKL
TM2 71 2.51x51 μ receptor 4DKL AT1 receptor 4ZUD
TM2 72 2.52x52 μ receptor 4DKL μ receptor 4DKL
TM2 73 2.53x53 μ receptor 4DKL D4 receptor 5WIV
TM2 74 2.54x54 μ receptor 4DKL CXCR4 3ODU
TM2 75 2.55x55 μ receptor 4DKL AT1 receptor 4ZUD
TM2 76 2.56x56 μ receptor 4DKL M1 receptor 5CXV
TM2 77 2.57x57 μ receptor 4DKL μ receptor 4DKL
TM2 78 2.58x58 μ receptor 4DKL μ receptor 4DKL
TM2 79 2.59x59 μ receptor 4DKL μ receptor 4DKL
TM2 80 2.60x60 μ receptor 4DKL PAR1 3VW7
TM2 81 2.61x61 μ receptor 4DKL LPA1 receptor 4Z35
TM2 82 2.62x62 μ receptor 4DKL μ receptor 4DKL
TM2 83 2.63x63 μ receptor 4DKL D2 receptor 6CM4
TM2 84 2.64x64 μ receptor 4DKL A2A receptor 3VG9
TM2 85 2.65x65 μ receptor 4DKL PAF receptor 5ZKP
TM2 86 2.66x66 μ receptor 4DKL D2 receptor 6CM4
ECL1 87 - - - -
ECL1 88 - - - -
ECL1 89 - - - -
ECL1 90 - - - -
ECL1 91 - - - -
ECL1 92 - - - -
TM3 93 3.24x24 μ receptor 4DKL μ receptor 4DKL
TM3 94 3.25x25 μ receptor 4DKL μ receptor 4DKL
TM3 95 3.26x26 μ receptor 4DKL US28 4XT1
TM3 96 3.27x27 μ receptor 4DKL CCR5 5UIW
TM3 97 3.28x28 μ receptor 4DKL μ receptor 4DKL
TM3 98 3.29x29 μ receptor 4DKL S1P1 receptor 3V2Y
TM3 99 3.30x30 μ receptor 4DKL A1 receptor 5UEN
TM3 100 3.31x31 μ receptor 4DKL CCR5 5UIW
TM3 101 3.32x32 μ receptor 4DKL CCR5 5UIW
TM3 102 3.33x33 μ receptor 4DKL CCR5 5UIW
TM3 103 3.34x34 μ receptor 4DKL CXCR4 3ODU
TM3 104 3.35x35 μ receptor 4DKL OX1 receptor 4ZJ8
TM3 105 3.36x36 μ receptor 4DKL μ receptor 4DKL
TM3 106 3.37x37 μ receptor 4DKL AT1 receptor 4ZUD
TM3 107 3.38x38 μ receptor 4DKL CCR2 5T1A
TM3 108 3.39x39 μ receptor 4DKL μ receptor 4DKL
TM3 109 3.40x40 μ receptor 4DKL AT1 receptor 4ZUD
TM3 110 3.41x41 μ receptor 4DKL μ receptor 4DKL
TM3 111 3.42x42 μ receptor 4DKL μ receptor 4DKL
TM3 112 3.43x43 μ receptor 4DKL CCR5 5UIW
TM3 113 3.44x44 μ receptor 4DKL μ receptor 4DKL
TM3 114 3.45x45 μ receptor 4DKL CXCR4 3ODU
TM3 115 3.46x46 μ receptor 4DKL CXCR4 3ODU
TM3 116 3.47x47 μ receptor 4DKL μ receptor 4DKL
TM3 117 3.48x48 μ receptor 4DKL - -
TM3 118 3.49x49 μ receptor 4DKL μ receptor 4DKL
TM3 119 3.50x50 μ receptor 4DKL μ receptor 4DKL
TM3 120 3.51x51 μ receptor 4DKL C5a1 receptor 5O9H
TM3 121 3.52x52 μ receptor 4DKL AT1 receptor 4ZUD
TM3 122 3.53x53 μ receptor 4DKL μ receptor 4DKL
TM3 123 3.54x54 μ receptor 4DKL AT1 receptor 4ZUD
TM3 124 3.55x55 μ receptor 4DKL A2A receptor 3VG9
TM3 125 3.56x56 μ receptor 4DKL LPA6 receptor 5XSZ
ICL2 126 34.50x50 - - - -
ICL2 127 34.51x51 LPA6 receptor 5XSZ OX1 receptor 4ZJ8
ICL2 128 34.52x52 LPA6 receptor 5XSZ OX1 receptor 4ZJ8
ICL2 129 34.53x53 LPA6 receptor 5XSZ - -
ICL2 130 34.54x54 LPA6 receptor 5XSZ 5-HT1B receptor 4IAQ
ICL2 131 34.55x55 LPA6 receptor 5XSZ D3 receptor 3PBL
ICL2 132 34.56x56 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
ICL2 133 34.57x57 - - - -
TM4 134 4.38x38 μ receptor 4DKL NTS1 receptor 4BUO
TM4 135 4.39x39 μ receptor 4DKL μ receptor 4DKL
TM4 136 4.40x40 μ receptor 4DKL μ receptor 4DKL
TM4 137 4.41x41 μ receptor 4DKL κ receptor 4DJH
TM4 138 4.42x42 μ receptor 4DKL - -
TM4 139 4.43x43 μ receptor 4DKL S1P1 receptor 3V2Y
TM4 140 4.44x44 μ receptor 4DKL OX1 receptor 4ZJ8
TM4 141 4.45x45 μ receptor 4DKL κ receptor 4DJH
TM4 142 4.46x46 μ receptor 4DKL AT1 receptor 4ZUD
TM4 143 4.47x47 μ receptor 4DKL CB1 receptor 5TGZ
TM4 144 4.48x48 μ receptor 4DKL CCR9 5LWE
TM4 145 4.49x49 μ receptor 4DKL κ receptor 4DJH
TM4 146 4.50x50 μ receptor 4DKL μ receptor 4DKL
TM4 147 4.51x51 μ receptor 4DKL CCR5 5UIW
TM4 148 4.52x52 μ receptor 4DKL μ receptor 4DKL
TM4 149 4.53x53 μ receptor 4DKL LPA6 receptor 5XSZ
TM4 150 4.54x54 μ receptor 4DKL - -
TM4 151 4.55x55 μ receptor 4DKL D2 receptor 6CM4
TM4 152 4.56x56 μ receptor 4DKL LPA6 receptor 5XSZ
TM4 153 4.57x57 AT2 receptor 5UNG AT1 receptor 4ZUD
TM4 154 4.58x59 AT2 receptor 5UNG CXCR4 3ODU
TM4 155 4.59x60 μ receptor 4DKL AT1 receptor 4ZUD
TM4 156 4.60x61 μ receptor 4DKL κ receptor 4DJH
TM4 157 4.61x62 μ receptor 4DKL PAR2 5NDD
TM4 158 4.62x63 μ receptor 4DKL - -
TM4 159 4.63x64 μ receptor 4DKL - -
TM4 160 4.64x65 LPA6 receptor 5XSZ - -
ECL2 161 - - - -
ECL2 162 - - - -
ECL2 163 - - - -
ECL2 164 - - - -
ECL2 165 - - - -
ECL2 166 - - - -
ECL2 167 - - - -
ECL2 168 45.50x50 μ receptor 4DKL μ receptor 4DKL
ECL2 169 45.51x51 μ receptor 4DKL Y1 receptor 5ZBH
ECL2 170 45.52x52 μ receptor 4DKL - -
ECL2 171 - - - -
ECL2 172 - - - -
TM5 173 5.30x31 AT2 receptor 5UNG apelin receptor 5VBL
TM5 174 5.31x32 μ receptor 4DKL - -
TM5 175 5.32x33 μ receptor 4DKL NOP receptor 5DHG
TM5 176 5.33x34 μ receptor 4DKL - -
TM5 177 5.34x35 μ receptor 4DKL μ receptor 4DKL
TM5 178 5.35x36 μ receptor 4DKL AT2 receptor 5UNG
TM5 179 5.36x37 μ receptor 4DKL BLT1 receptor 5X33
TM5 180 5.37x38 μ receptor 4DKL - -
TM5 181 5.38x39 μ receptor 4DKL C5a1 receptor 5O9H
TM5 182 5.39x40 μ receptor 4DKL PAR2 5NDD
TM5 183 5.40x41 μ receptor 4DKL CXCR4 3ODU
TM5 184 5.41x42 μ receptor 4DKL - -
TM5 185 5.42x43 μ receptor 4DKL ETB receptor 5X93
TM5 186 5.43x44 μ receptor 4DKL LPA6 receptor 5XSZ
TM5 187 5.44x45 μ receptor 4DKL C5a1 receptor 5O9H
TM5 188 5.45x46 μ receptor 4DKL μ receptor 4DKL
TM5 189 5.46x461 μ receptor 4DKL AT1 receptor 4ZUD
TM5 190 5.47x47 μ receptor 4DKL μ receptor 4DKL
TM5 191 5.48x48 μ receptor 4DKL AT1 receptor 4ZUD
TM5 192 5.49x49 μ receptor 4DKL CCR5 5UIW
TM5 193 5.50x50 μ receptor 4DKL μ receptor 4DKL
TM5 194 5.51x51 μ receptor 4DKL NTS1 receptor 4BUO
TM5 195 5.52x52 μ receptor 4DKL OX1 receptor 4ZJ8
TM5 196 5.53x53 μ receptor 4DKL μ receptor 4DKL
TM5 197 5.54x54 μ receptor 4DKL CCR5 5UIW
TM5 198 5.55x55 μ receptor 4DKL - -
TM5 199 5.56x56 μ receptor 4DKL ETB receptor 5X93
TM5 200 5.57x57 μ receptor 4DKL μ receptor 4DKL
TM5 201 5.58x58 μ receptor 4DKL - -
TM5 202 5.59x59 μ receptor 4DKL NOP receptor 5DHG
TM5 203 5.60x60 μ receptor 4DKL A2A receptor 3VG9
TM5 204 5.61x61 μ receptor 4DKL - -
TM5 205 5.62x62 μ receptor 4DKL μ receptor 4DKL
TM5 206 5.63x63 μ receptor 4DKL 5-HT2B receptor 4IB4
TM5 207 5.64x64 AT2 receptor 5UNG US28 4XT1
TM5 208 5.65x65 AT2 receptor 5UNG AT2 receptor 5UNG
TM5 209 5.66x66 AT2 receptor 5UNG AT2 receptor 5UNG
TM5 210 5.67x67 AT2 receptor 5UNG - -
TM5 211 5.68x68 AT2 receptor 5UNG BLT1 receptor 5X33
ICL3 212 - - - -
ICL3 213 AT2 receptor 5UNG - -
ICL3 214 - - - -
TM6 215 6.24x24 AT2 receptor 5UNG - -
TM6 216 6.25x25 AT2 receptor 5UNG 5-HT2B receptor 4IB4
TM6 217 6.26x26 AT2 receptor 5UNG - -
TM6 218 6.27x27 AT2 receptor 5UNG - -
TM6 219 6.28x28 AT2 receptor 5UNG M1 receptor 5CXV
TM6 220 6.29x29 μ receptor 4DKL CXCR4 3ODU
TM6 221 6.30x30 μ receptor 4DKL - -
TM6 222 6.31x31 μ receptor 4DKL Y1 receptor 5ZBH
TM6 223 6.32x32 μ receptor 4DKL S1P1 receptor 3V2Y
TM6 224 6.33x33 μ receptor 4DKL - -
TM6 225 6.34x34 μ receptor 4DKL - -
TM6 226 6.35x35 μ receptor 4DKL - -
TM6 227 6.36x36 μ receptor 4DKL A2A receptor 3VG9
TM6 228 6.37x37 μ receptor 4DKL AT1 receptor 4ZUD
TM6 229 6.38x38 μ receptor 4DKL A2A receptor 3VG9
TM6 230 6.39x39 μ receptor 4DKL AT1 receptor 4ZUD
TM6 231 6.40x40 μ receptor 4DKL - -
TM6 232 6.41x41 μ receptor 4DKL OX1 receptor 4ZJ8
TM6 233 6.42x42 μ receptor 4DKL μ receptor 4DKL
TM6 234 6.43x43 μ receptor 4DKL μ receptor 4DKL
TM6 235 6.44x44 μ receptor 4DKL μ receptor 4DKL
TM6 236 6.45x45 μ receptor 4DKL κ receptor 4DJH
TM6 237 6.46x46 μ receptor 4DKL μ receptor 4DKL
TM6 238 6.47x47 μ receptor 4DKL AT1 receptor 4ZUD
TM6 239 6.48x48 μ receptor 4DKL LPA6 receptor 5XSZ
TM6 240 6.49x49 μ receptor 4DKL CXCR4 3ODU
TM6 241 6.50x50 μ receptor 4DKL μ receptor 4DKL
TM6 242 6.51x51 μ receptor 4DKL NOP receptor 5DHG
TM6 243 6.52x52 μ receptor 4DKL μ receptor 4DKL
TM6 244 6.53x53 μ receptor 4DKL ETB receptor 5X93
TM6 245 6.54x54 μ receptor 4DKL CXCR4 3ODU
TM6 246 6.55x55 μ receptor 4DKL H1 receptor 3RZE
TM6 247 6.56x56 μ receptor 4DKL AT1 receptor 4ZUD
TM6 248 6.57x57 μ receptor 4DKL AT1 receptor 4ZUD
TM6 249 6.58x58 μ receptor 4DKL NOP receptor 5DHG
TM6 250 6.59x59 μ receptor 4DKL A2A receptor 3VG9
TM6 251 6.60x60 μ receptor 4DKL μ receptor 4DKL
TM6 252 6.61x61 μ receptor 4DKL δ receptor 4N6H
TM6 253 6.62x62 LPA6 receptor 5XSZ P2Y1 receptor 4XNW
TM6 254 6.63x63 LPA6 receptor 5XSZ - -
TM6 255 6.64x64 LPA6 receptor 5XSZ - -
ECL3 256 - - - -
ECL3 257 LPA6 receptor 5XSZ - -
ECL3 258 - - - -
TM7 259 7.24x23 LPA6 receptor 5XSZ - -
TM7 260 7.25x24 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM7 261 7.26x25 LPA6 receptor 5XSZ AT1 receptor 4ZUD
TM7 262 7.27x26 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM7 263 7.28x27 μ receptor 4DKL - -
TM7 264 7.29x28 μ receptor 4DKL PAF receptor 5ZKP
TM7 265 7.30x29 μ receptor 4DKL US28 4XT1
TM7 266 7.31x30 μ receptor 4DKL CCR9 5LWE
TM7 267 7.32x31 μ receptor 4DKL A1 receptor 5UEN
TM7 268 7.33x32 μ receptor 4DKL S1P1 receptor 3V2Y
TM7 269 7.34x33 μ receptor 4DKL NTS1 receptor 4BUO
TM7 270 7.35x34 μ receptor 4DKL NOP receptor 5DHG
TM7 271 7.36x35 μ receptor 4DKL CCR5 5UIW
TM7 272 7.37x36 μ receptor 4DKL δ receptor 4N6H
TM7 273 7.38x37 μ receptor 4DKL OX1 receptor 4ZJ8
TM7 274 7.39x38 μ receptor 4DKL - -
TM7 275 7.40x39 μ receptor 4DKL AT1 receptor 4ZUD
TM7 276 7.41x40 μ receptor 4DKL C5a1 receptor 5O9H
TM7 277 7.42x41 μ receptor 4DKL apelin receptor 5VBL
TM7 278 7.43x42 μ receptor 4DKL - -
TM7 279 7.44x43 μ receptor 4DKL NOP receptor 5DHG
TM7 280 7.45x45 μ receptor 4DKL μ receptor 4DKL
TM7 281 7.46x46 μ receptor 4DKL CCR5 5UIW
TM7 282 7.47x47 μ receptor 4DKL μ receptor 4DKL
TM7 283 7.48x48 μ receptor 4DKL μ receptor 4DKL
TM7 284 7.49x49 μ receptor 4DKL LPA6 receptor 5XSZ
TM7 285 7.50x50 μ receptor 4DKL - -
TM7 286 7.51x51 μ receptor 4DKL apelin receptor 5VBL
TM7 287 7.52x52 μ receptor 4DKL M1 receptor 5CXV
TM7 288 7.53x53 μ receptor 4DKL μ receptor 4DKL
TM7 289 7.54x54 μ receptor 4DKL ETB receptor 5X93
TM7 290 7.55x55 μ receptor 4DKL μ receptor 4DKL
TM7 291 7.56x56 μ receptor 4DKL CCR5 5UIW
H8 292 8.47x47 μ receptor 4DKL A2A receptor 3VG9
H8 293 8.48x48 μ receptor 4DKL ETB receptor 5X93
H8 294 8.49x49 μ receptor 4DKL CCR5 5UIW
H8 295 8.50x50 μ receptor 4DKL μ receptor 4DKL
H8 296 8.51x51 μ receptor 4DKL CCR5 5UIW
H8 297 8.52x52 μ receptor 4DKL - -
H8 298 8.53x53 μ receptor 4DKL - -
H8 299 8.54x54 μ receptor 4DKL - -
H8 300 8.55x55 μ receptor 4DKL NOP receptor 5DHH
H8 301 8.56x56 μ receptor 4DKL OX1 receptor 4ZJ8
H8 302 8.57x57 μ receptor 4DKL - -
H8 303 8.58x58 μ receptor 4DKL - -
H8 304 8.59x59 μ receptor 4DKL - -
C-term 305 - - - -
C-term 306 - - - -
C-term 307 - - - -
C-term 308 - - - -
C-term 309 - - - -