HCA1 receptor homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Inactive (Δ distance (Å): -1.56 docs)

VERSION

2018-07-10

MAIN TEMPLATE

δ receptor (sequence similarity: 45%) PDB: 4N6H

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 91.1 3.4 5.5
Side-chains 27.1 51.4 21.6

Number of backbone templates: 2
Number of rotamer templates: 44

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4N6H
4XNW
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 8 - - - -
N-term 9 - - - -
N-term 10 δ receptor 4N6H δ receptor 4N6H
N-term 11 δ receptor 4N6H δ receptor 4N6H
N-term 12 δ receptor 4N6H δ receptor 4N6H
TM1 13 1.30x30 δ receptor 4N6H ETB receptor 5X93
TM1 14 1.31x31 δ receptor 4N6H κ receptor 4DJH
TM1 15 1.32x32 δ receptor 4N6H CCR9 5LWE
TM1 16 1.33x33 δ receptor 4N6H CCR2 5T1A
TM1 17 1.34x34 δ receptor 4N6H OX1 receptor 4ZJ8
TM1 18 1.35x35 δ receptor 4N6H β2-adrenoceptor 5JQH
TM1 19 1.36x36 δ receptor 4N6H AT1 receptor 4ZUD
TM1 20 1.37x37 δ receptor 4N6H CCR2 5T1A
TM1 21 1.38x38 δ receptor 4N6H δ receptor 4N6H
TM1 22 1.39x39 δ receptor 4N6H H1 receptor 3RZE
TM1 23 1.40x40 δ receptor 4N6H OX2 receptor 5WS3
TM1 24 1.41x41 δ receptor 4N6H κ receptor 4DJH
TM1 25 1.42x42 δ receptor 4N6H FFA1 receptor 5TZY
TM1 26 1.43x43 δ receptor 4N6H κ receptor 4DJH
TM1 27 1.44x44 δ receptor 4N6H κ receptor 4DJH
TM1 28 1.45x45 δ receptor 4N6H apelin receptor 5VBL
TM1 29 1.46x46 δ receptor 4N6H δ receptor 4N6H
TM1 30 1.47x47 δ receptor 4N6H CCR9 5LWE
TM1 31 1.48x48 δ receptor 4N6H δ receptor 4N6H
TM1 32 1.49x49 δ receptor 4N6H δ receptor 4N6H
TM1 33 1.50x50 δ receptor 4N6H δ receptor 4N6H
TM1 34 1.51x51 δ receptor 4N6H apelin receptor 5VBL
TM1 35 1.52x52 δ receptor 4N6H NTS1 receptor 4BUO
TM1 36 1.53x53 δ receptor 4N6H P2Y1 receptor 4XNW
TM1 37 1.54x54 δ receptor 4N6H apelin receptor 5VBL
TM1 38 1.55x55 δ receptor 4N6H CB1 receptor 5TGZ
TM1 39 1.56x56 δ receptor 4N6H δ receptor 4N6H
TM1 40 1.57x57 δ receptor 4N6H M3 receptor 4U15
TM1 41 1.58x58 δ receptor 4N6H AT2 receptor 5UNG
TM1 42 1.59x59 δ receptor 4N6H AT1 receptor 4ZUD
TM1 43 1.60x60 δ receptor 4N6H Rhodopsin 1GZM
ICL1 44 δ receptor 4N6H - -
ICL1 45 δ receptor 4N6H δ receptor 4N6H
ICL1 46 δ receptor 4N6H - -
ICL1 47 δ receptor 4N6H - -
TM2 48 2.37x37 δ receptor 4N6H PAR1 3VW7
TM2 49 2.38x38 δ receptor 4N6H Rhodopsin 1GZM
TM2 50 2.39x39 δ receptor 4N6H CB1 receptor 5TGZ
TM2 51 2.40x40 δ receptor 4N6H LPA6 receptor 5XSZ
TM2 52 2.41x41 δ receptor 4N6H AT1 receptor 4ZUD
TM2 53 2.42x42 δ receptor 4N6H δ receptor 4N6H
TM2 54 2.43x43 δ receptor 4N6H AT1 receptor 4ZUD
TM2 55 2.44x44 δ receptor 4N6H δ receptor 4N6H
TM2 56 2.45x45 δ receptor 4N6H δ receptor 4N6H
TM2 57 2.46x46 δ receptor 4N6H δ receptor 4N6H
TM2 58 2.47x47 δ receptor 4N6H δ receptor 4N6H
TM2 59 2.48x48 δ receptor 4N6H apelin receptor 5VBL
TM2 60 2.49x49 δ receptor 4N6H δ receptor 4N6H
TM2 61 2.50x50 δ receptor 4N6H δ receptor 4N6H
TM2 62 2.51x51 δ receptor 4N6H C5a1 receptor 5O9H
TM2 63 2.52x52 δ receptor 4N6H δ receptor 4N6H
TM2 64 2.53x53 δ receptor 4N6H D4 receptor 5WIV
TM2 65 2.54x54 δ receptor 4N6H - -
TM2 66 2.55x55 δ receptor 4N6H OX2 receptor 5WS3
TM2 67 2.56x56 δ receptor 4N6H OX1 receptor 4ZJ8
TM2 68 2.57x57 δ receptor 4N6H δ receptor 4N6H
TM2 69 2.58x58 δ receptor 4N6H δ receptor 4N6H
TM2 70 2.59x59 δ receptor 4N6H δ receptor 4N6H
TM2 71 2.60x60 δ receptor 4N6H LPA6 receptor 5XSZ
TM2 72 2.61x61 δ receptor 4N6H M2 receptor 3UON
TM2 73 2.62x62 δ receptor 4N6H - -
TM2 74 2.63x63 δ receptor 4N6H AT1 receptor 4ZUD
TM2 75 2.64x64 δ receptor 4N6H δ receptor 4N6H
TM2 76 2.65x65 δ receptor 4N6H δ receptor 4N6H
TM2 77 2.66x66 δ receptor 4N6H apelin receptor 5VBL
ECL1 78 - - - -
ECL1 79 P2Y1 receptor 4XNW - -
ECL1 80 23.49x49 P2Y1 receptor 4XNW Y1 receptor 5ZBH
ECL1 81 23.50x50 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
ECL1 82 23.51x51 P2Y1 receptor 4XNW NTS1 receptor 4BUO
ECL1 83 23.52x52 - - - -
TM3 84 3.21x21 δ receptor 4N6H δ receptor 4N6H
TM3 85 3.22x22 δ receptor 4N6H κ receptor 4DJH
TM3 86 3.23x23 δ receptor 4N6H μ receptor 4DKL
TM3 87 3.24x24 δ receptor 4N6H US28 5WB1
TM3 88 3.25x25 δ receptor 4N6H δ receptor 4N6H
TM3 89 3.26x26 δ receptor 4N6H NTS1 receptor 4BUO
TM3 90 3.27x27 δ receptor 4N6H OX1 receptor 4ZJ8
TM3 91 3.28x28 δ receptor 4N6H - -
TM3 92 3.29x29 δ receptor 4N6H δ receptor 4N6H
TM3 93 3.30x30 δ receptor 4N6H Y1 receptor 5ZBH
TM3 94 3.31x31 δ receptor 4N6H - -
TM3 95 3.32x32 δ receptor 4N6H AT2 receptor 5UNG
TM3 96 3.33x33 δ receptor 4N6H OX1 receptor 4ZJ8
TM3 97 3.34x34 δ receptor 4N6H CCR9 5LWE
TM3 98 3.35x35 δ receptor 4N6H δ receptor 4N6H
TM3 99 3.36x36 δ receptor 4N6H - -
TM3 100 3.37x37 δ receptor 4N6H A2A receptor 4UHR
TM3 101 3.38x38 δ receptor 4N6H CCR2 5T1A
TM3 102 3.39x39 δ receptor 4N6H δ receptor 4N6H
TM3 103 3.40x40 δ receptor 4N6H δ receptor 4N6H
TM3 104 3.41x41 δ receptor 4N6H - -
TM3 105 3.42x42 δ receptor 4N6H CCR2 5T1A
TM3 106 3.43x43 δ receptor 4N6H δ receptor 4N6H
TM3 107 3.44x44 δ receptor 4N6H δ receptor 4N6H
TM3 108 3.45x45 δ receptor 4N6H β2-adrenoceptor 5JQH
TM3 109 3.46x46 δ receptor 4N6H - -
TM3 110 3.47x47 δ receptor 4N6H OX1 receptor 4ZJ8
TM3 111 3.48x48 δ receptor 4N6H C5a1 receptor 5O9H
TM3 112 3.49x49 δ receptor 4N6H δ receptor 4N6H
TM3 113 3.50x50 δ receptor 4N6H δ receptor 4N6H
TM3 114 3.51x51 δ receptor 4N6H δ receptor 4N6H
TM3 115 3.52x52 δ receptor 4N6H M2 receptor 3UON
TM3 116 3.53x53 δ receptor 4N6H P2Y12 receptor 4NTJ
TM3 117 3.54x54 δ receptor 4N6H δ receptor 4N6H
TM3 118 3.55x55 δ receptor 4N6H AT1 receptor 4ZUD
TM3 119 3.56x56 δ receptor 4N6H δ receptor 4N6H
ICL2 120 34.50x50 - - - -
ICL2 121 34.51x51 P2Y1 receptor 4XNW - -
ICL2 122 34.52x52 P2Y1 receptor 4XNW D3 receptor 3PBL
ICL2 123 34.53x53 P2Y1 receptor 4XNW δ receptor 4N6H
ICL2 124 34.54x54 P2Y1 receptor 4XNW - -
ICL2 125 34.55x55 P2Y1 receptor 4XNW C5a1 receptor 6C1R
ICL2 126 34.56x56 P2Y1 receptor 4XNW - -
ICL2 127 34.57x57 - - - -
TM4 128 4.38x38 δ receptor 4N6H NTS1 receptor 4BUO
TM4 129 4.39x39 δ receptor 4N6H M2 receptor 3UON
TM4 130 4.40x40 δ receptor 4N6H μ receptor 4DKL
TM4 131 4.41x41 δ receptor 4N6H AT1 receptor 4ZUD
TM4 132 4.42x42 δ receptor 4N6H δ receptor 4N6H
TM4 133 4.43x43 δ receptor 4N6H apelin receptor 5VBL
TM4 134 4.44x44 δ receptor 4N6H OX1 receptor 4ZJ8
TM4 135 4.45x45 δ receptor 4N6H δ receptor 4N6H
TM4 136 4.46x46 δ receptor 4N6H Rhodopsin 1GZM
TM4 137 4.47x47 δ receptor 4N6H CB1 receptor 5TGZ
TM4 138 4.48x48 δ receptor 4N6H CCR9 5LWE
TM4 139 4.49x49 δ receptor 4N6H apelin receptor 5VBL
TM4 140 4.50x50 δ receptor 4N6H δ receptor 4N6H
TM4 141 4.51x51 δ receptor 4N6H NOP receptor 5DHG
TM4 142 4.52x52 δ receptor 4N6H δ receptor 4N6H
TM4 143 4.53x53 δ receptor 4N6H P2Y1 receptor 4XNW
TM4 144 4.54x54 δ receptor 4N6H 5-HT2C receptor 6BQH
TM4 145 4.55x55 δ receptor 4N6H AT1 receptor 4ZUD
TM4 146 4.56x56 δ receptor 4N6H LPA6 receptor 5XSZ
TM4 147 4.57x57 δ receptor 4N6H CXCR4 3ODU
TM4 148 4.58x58 δ receptor 4N6H δ receptor 4N6H
TM4 149 4.59x59 δ receptor 4N6H PAF receptor 5ZKP
TM4 150 4.60x60 δ receptor 4N6H - -
TM4 151 4.61x61 δ receptor 4N6H Rhodopsin 1GZM
TM4 152 4.62x62 δ receptor 4N6H Y1 receptor 5ZBH
TM4 153 4.63x63 δ receptor 4N6H - -
TM4 154 4.64x64 δ receptor 4N6H - -
ECL2 155 δ receptor 4N6H - -
ECL2 156 δ receptor 4N6H - -
ECL2 157 δ receptor 4N6H - -
ECL2 158 δ receptor 4N6H - -
ECL2 159 δ receptor 4N6H - -
ECL2 160 δ receptor 4N6H - -
ECL2 161 δ receptor 4N6H - -
ECL2 162 δ receptor 4N6H δ receptor 4N6H
ECL2 163 δ receptor 4N6H δ receptor 4N6H
ECL2 164 δ receptor 4N6H - -
ECL2 165 45.50x50 δ receptor 4N6H δ receptor 4N6H
ECL2 166 45.51x51 δ receptor 4N6H H1 receptor 3RZE
ECL2 167 45.52x52 δ receptor 4N6H CCR5 5UIW
ECL2 168 - - - -
ECL2 169 - - - -
TM5 170 5.32x33 δ receptor 4N6H - -
TM5 171 5.33x34 δ receptor 4N6H - -
TM5 172 5.34x35 δ receptor 4N6H P2Y1 receptor 4XNW
TM5 173 5.35x36 δ receptor 4N6H ETB receptor 5X93
TM5 174 5.36x37 δ receptor 4N6H μ receptor 4DKL
TM5 175 5.37x38 δ receptor 4N6H AT1 receptor 4ZUD
TM5 176 5.38x39 δ receptor 4N6H - -
TM5 177 5.39x40 δ receptor 4N6H OX1 receptor 4ZJ8
TM5 178 5.40x41 δ receptor 4N6H - -
TM5 179 5.41x42 δ receptor 4N6H 5-HT2C receptor 6BQH
TM5 180 5.42x43 δ receptor 4N6H Rhodopsin 1GZM
TM5 181 5.43x44 δ receptor 4N6H δ receptor 4N6H
TM5 182 5.44x45 δ receptor 4N6H - -
TM5 183 5.45x46 δ receptor 4N6H AT1 receptor 4YAY
TM5 184 5.46x461 δ receptor 4N6H - -
TM5 185 5.47x47 δ receptor 4N6H δ receptor 4N6H
TM5 186 5.48x48 δ receptor 4N6H Y1 receptor 5ZBH
TM5 187 5.49x49 δ receptor 4N6H μ receptor 4DKL
TM5 188 5.50x50 δ receptor 4N6H δ receptor 4N6H
TM5 189 5.51x51 δ receptor 4N6H OX1 receptor 4ZJ8
TM5 190 5.52x52 δ receptor 4N6H OX1 receptor 4ZJ8
TM5 191 5.53x53 δ receptor 4N6H δ receptor 4N6H
TM5 192 5.54x54 δ receptor 4N6H δ receptor 4N6H
TM5 193 5.55x55 δ receptor 4N6H AT1 receptor 4ZUD
TM5 194 5.56x56 δ receptor 4N6H β2-adrenoceptor 5JQH
TM5 195 5.57x57 δ receptor 4N6H δ receptor 4N6H
TM5 196 5.58x58 δ receptor 4N6H LPA6 receptor 5XSZ
TM5 197 5.59x59 δ receptor 4N6H OX1 receptor 4ZJ8
TM5 198 5.60x60 δ receptor 4N6H Y1 receptor 5ZBH
TM5 199 5.61x61 δ receptor 4N6H AT1 receptor 4ZUD
TM5 200 5.62x62 δ receptor 4N6H Rhodopsin 1GZM
TM5 201 5.63x63 δ receptor 4N6H CB1 receptor 5TGZ
TM5 202 5.64x64 δ receptor 4N6H - -
TM5 203 5.65x65 δ receptor 4N6H δ receptor 4N6H
TM5 204 5.66x66 δ receptor 4N6H δ receptor 4N6H
TM5 205 5.67x67 δ receptor 4N6H Y1 receptor 5ZBH
ICL3 206 δ receptor 4N6H δ receptor 4N6H
ICL3 207 δ receptor 4N6H - -
ICL3 208 δ receptor 4N6H - -
ICL3 209 δ receptor 4N6H - -
ICL3 210 δ receptor 4N6H - -
TM6 211 6.26x26 δ receptor 4N6H NTS1 receptor 4BUO
TM6 212 6.27x27 δ receptor 4N6H Rhodopsin 1GZM
TM6 213 6.28x28 δ receptor 4N6H PAF receptor 5ZKP
TM6 214 6.29x29 δ receptor 4N6H H1 receptor 3RZE
TM6 215 6.30x30 δ receptor 4N6H LPA1 receptor 4Z35
TM6 216 6.31x31 δ receptor 4N6H Y1 receptor 5ZBH
TM6 217 6.32x32 δ receptor 4N6H OX1 receptor 4ZJ8
TM6 218 6.33x33 δ receptor 4N6H CCR2 5T1A
TM6 219 6.34x34 δ receptor 4N6H δ receptor 4N6H
TM6 220 6.35x35 δ receptor 4N6H δ receptor 4N6H
TM6 221 6.36x36 δ receptor 4N6H PAR1 3VW7
TM6 222 6.37x37 δ receptor 4N6H AT1 receptor 4ZUD
TM6 223 6.38x38 δ receptor 4N6H AT1 receptor 4ZUD
TM6 224 6.39x39 δ receptor 4N6H δ receptor 4N6H
TM6 225 6.40x40 δ receptor 4N6H δ receptor 4N6H
TM6 226 6.41x41 δ receptor 4N6H D2 receptor 6CM4
TM6 227 6.42x42 δ receptor 4N6H CCR2 5T1A
TM6 228 6.43x43 δ receptor 4N6H κ receptor 4DJH
TM6 229 6.44x44 δ receptor 4N6H δ receptor 4N6H
TM6 230 6.45x45 δ receptor 4N6H μ receptor 4DKL
TM6 231 6.46x46 δ receptor 4N6H - -
TM6 232 6.47x47 δ receptor 4N6H δ receptor 4N6H
TM6 233 6.48x48 δ receptor 4N6H OX1 receptor 4ZJ8
TM6 234 6.49x49 δ receptor 4N6H OX1 receptor 4ZJ8
TM6 235 6.50x50 δ receptor 4N6H δ receptor 4N6H
TM6 236 6.51x51 δ receptor 4N6H PAR2 5NDD
TM6 237 6.52x52 δ receptor 4N6H - -
TM6 238 6.53x53 δ receptor 4N6H Rhodopsin 4ZWJ
TM6 239 6.54x54 δ receptor 4N6H ETB receptor 5X93
TM6 240 6.55x55 δ receptor 4N6H NTS1 receptor 4BUO
TM6 241 6.56x56 δ receptor 4N6H κ receptor 4DJH
TM6 242 6.57x57 δ receptor 4N6H Rhodopsin 1GZM
TM6 243 6.58x58 δ receptor 4N6H Y1 receptor 5ZBH
TM6 244 6.59x59 δ receptor 4N6H A1 receptor 5UEN
TM6 245 6.60x60 δ receptor 4N6H Y1 receptor 5ZBH
TM6 246 6.61x61 δ receptor 4N6H - -
ECL3 247 - - - -
ECL3 248 - - - -
ECL3 249 - - - -
ECL3 250 - - - -
ECL3 251 - - - -
ECL3 252 - - - -
TM7 253 7.28x27 δ receptor 4N6H δ receptor 4N6H
TM7 254 7.29x28 δ receptor 4N6H δ receptor 4N6H
TM7 255 7.30x29 δ receptor 4N6H US28 4XT1
TM7 256 7.31x30 δ receptor 4N6H δ receptor 4N6H
TM7 257 7.32x31 δ receptor 4N6H CXCR4 3ODU
TM7 258 7.33x32 δ receptor 4N6H - -
TM7 259 7.34x33 δ receptor 4N6H δ receptor 4N6H
TM7 260 7.35x34 δ receptor 4N6H δ receptor 4N6H
TM7 261 7.36x35 δ receptor 4N6H δ receptor 4N6H
TM7 262 7.37x36 δ receptor 4N6H AT1 receptor 4ZUD
TM7 263 7.38x37 δ receptor 4N6H AT1 receptor 4ZUD
TM7 264 7.39x38 δ receptor 4N6H S1P1 receptor 3V2Y
TM7 265 7.40x39 δ receptor 4N6H C5a1 receptor 5O9H
TM7 266 7.41x40 δ receptor 4N6H Rhodopsin 1GZM
TM7 267 7.42x41 δ receptor 4N6H A1 receptor 5UEN
TM7 268 7.43x42 δ receptor 4N6H δ receptor 4N6H
TM7 269 7.44x43 δ receptor 4N6H - -
TM7 270 7.45x45 δ receptor 4N6H δ receptor 4N6H
TM7 271 7.46x46 δ receptor 4N6H δ receptor 4N6H
TM7 272 7.47x47 δ receptor 4N6H - -
TM7 273 7.48x48 δ receptor 4N6H δ receptor 4N6H
TM7 274 7.49x49 δ receptor 4N6H LPA6 receptor 5XSZ
TM7 275 7.50x50 δ receptor 4N6H δ receptor 4N6H
TM7 276 7.51x51 δ receptor 4N6H AT1 receptor 4ZUD
TM7 277 7.52x52 δ receptor 4N6H 5-HT2C receptor 6BQH
TM7 278 7.53x53 δ receptor 4N6H δ receptor 4N6H
TM7 279 7.54x54 δ receptor 4N6H ETB receptor 5X93
TM7 280 7.55x55 δ receptor 4N6H δ receptor 4N6H
TM7 281 7.56x56 δ receptor 4N6H 5-HT1B receptor 4IAQ
H8 282 8.47x47 δ receptor 4N6H OX1 receptor 4ZJ8
H8 283 8.48x48 δ receptor 4N6H apelin receptor 5VBL
H8 284 8.49x49 δ receptor 4N6H P2Y12 receptor 4NTJ
H8 285 8.50x50 δ receptor 4N6H δ receptor 4N6H
H8 286 8.51x51 δ receptor 4N6H - -
H8 287 8.52x52 δ receptor 4N6H M2 receptor 3UON
H8 288 8.53x53 δ receptor 4N6H - -
H8 289 8.54x54 δ receptor 4N6H - -
H8 290 8.55x55 δ receptor 4N6H - -
H8 291 8.56x56 δ receptor 4N6H CCR9 5LWE
H8 292 8.57x57 δ receptor 4N6H δ receptor 4N6H
H8 293 8.58x58 δ receptor 4N6H - -
H8 294 8.59x59 δ receptor 4N6H μ receptor 4DKL
C-term 295 δ receptor 4N6H δ receptor 4N6H
C-term 296 δ receptor 4N6H δ receptor 4N6H
C-term 297 δ receptor 4N6H δ receptor 4N6H
C-term 298 - - - -
C-term 299 - - - -