MAS1 homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Active (Δ distance (Å): 9.8 docs)

VERSION

2018-07-10

MAIN TEMPLATE

κ receptor (sequence similarity: 39%) PDB: 6B73

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 80.3 9.3 10.4
Side-chains 15.4 57.3 27.2

Number of backbone templates: 6
Number of rotamer templates: 38

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6B73
4DJH
5O9H
5VBL
4PXZ
5NDD
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 25 - - - -
N-term 26 - - - -
N-term 27 κ receptor 6B73 κ receptor 6B73
N-term 28 κ receptor 6B73 κ receptor 6B73
N-term 29 κ receptor 6B73 κ receptor 6B73
TM1 30 1.30x30 κ receptor 6B73 - -
TM1 31 1.31x31 κ receptor 6B73 CB1 receptor 5XRA
TM1 32 1.32x32 κ receptor 6B73 Y1 receptor 5ZBH
TM1 33 1.33x33 κ receptor 6B73 US28 4XT1
TM1 34 1.34x34 κ receptor 6B73 κ receptor 6B73
TM1 35 1.35x35 κ receptor 6B73 NTS1 receptor 5T04
TM1 36 1.36x36 κ receptor 6B73 - -
TM1 37 1.37x37 κ receptor 6B73 - -
TM1 38 1.38x38 κ receptor 6B73 κ receptor 6B73
TM1 39 1.39x39 κ receptor 6B73 5-HT2C receptor 6BQH
TM1 40 1.40x40 κ receptor 6B73 apelin receptor 5VBL
TM1 41 1.41x41 κ receptor 6B73 M2 receptor 4MQT
TM1 42 1.42x42 κ receptor 6B73 AT2 receptor 5UNG
TM1 43 1.43x43 κ receptor 6B73 M2 receptor 4MQT
TM1 44 1.44x44 κ receptor 6B73 - -
TM1 45 1.45x45 κ receptor 6B73 κ receptor 6B73
TM1 46 1.46x46 κ receptor 6B73 κ receptor 6B73
TM1 47 1.47x47 κ receptor 6B73 AT2 receptor 5UNG
TM1 48 1.48x48 κ receptor 6B73 κ receptor 6B73
TM1 49 1.49x49 κ receptor 6B73 CB1 receptor 5XRA
TM1 50 1.50x50 κ receptor 6B73 κ receptor 6B73
TM1 51 1.51x51 κ receptor 6B73 PAF receptor 5ZKP
TM1 52 1.52x52 κ receptor 6B73 - -
TM1 53 1.53x53 κ receptor 6B73 Y1 receptor 5ZBH
TM1 54 1.54x54 κ receptor 6B73 NTS1 receptor 5T04
TM1 55 1.55x55 κ receptor 6B73 A1 receptor 6D9H
TM1 56 1.56x56 κ receptor 6B73 - -
TM1 57 1.57x57 κ receptor 6B73 CCR5 5UIW
TM1 58 1.58x58 κ receptor 6B73 AT2 receptor 5UNG
TM1 59 1.59x59 κ receptor 6B73 AT1 receptor 4ZUD
TM1 60 1.60x60 κ receptor 6B73 US28 4XT1
ICL1 61 - - - -
ICL1 62 C5a1 receptor 5O9H - -
ICL1 63 - - - -
TM2 64 2.37x37 κ receptor 6B73 A2A receptor 5G53
TM2 65 2.38x38 κ receptor 6B73 5-HT1B receptor 6G79
TM2 66 2.39x39 κ receptor 6B73 P2Y12 receptor 4NTJ
TM2 67 2.40x40 κ receptor 6B73 LPA6 receptor 5XSZ
TM2 68 2.41x41 κ receptor 6B73 US28 4XT1
TM2 69 2.42x42 κ receptor 6B73 κ receptor 6B73
TM2 70 2.43x43 κ receptor 6B73 κ receptor 6B73
TM2 71 2.44x44 κ receptor 6B73 β2-adrenoceptor 3SN6
TM2 72 2.45x45 κ receptor 6B73 CXCR4 3ODU
TM2 73 2.46x46 κ receptor 6B73 κ receptor 6B73
TM2 74 2.47x47 κ receptor 6B73 CXCR4 3ODU
TM2 75 2.48x48 κ receptor 6B73 5-HT2C receptor 6BQG
TM2 76 2.49x49 κ receptor 6B73 κ receptor 6B73
TM2 77 2.50x50 κ receptor 6B73 κ receptor 6B73
TM2 78 2.51x51 κ receptor 6B73 A2A receptor 5G53
TM2 79 2.52x52 κ receptor 6B73 - -
TM2 80 2.53x53 κ receptor 6B73 AT2 receptor 5UNG
TM2 81 2.54x54 κ receptor 6B73 AT2 receptor 5UNG
TM2 82 2.55x55 κ receptor 6B73 Rhodopsin 5DYS
TM2 83 2.56x56 κ receptor 6B73 OX2 receptor 5WS3
TM2 84 2.57x57 κ receptor 6B73 A1 receptor 6D9H
TM2 85 2.58x58 κ receptor 6B73 LPA1 receptor 4Z35
TM2 86 2.59x59 κ receptor 6B73 5-HT2B receptor 5TUD
TM2 87 2.60x60 κ receptor 6B73 C5a1 receptor 5O9H
TM2 88 2.61x61 κ receptor 6B73 κ receptor 6B73
TM2 89 2.62x62 κ receptor 6B73 CB1 receptor 5XRA
TM2 90 2.63x63 κ receptor 6B73 CB1 receptor 5XRA
TM2 91 2.64x64 κ receptor 6B73 κ receptor 6B73
TM2 92 2.65x65 κ receptor 6B73 AT1 receptor 4ZUD
TM2 93 2.66x66 κ receptor 6B73 NOP receptor 5DHG
TM2 94 2.67x67 apelin receptor 5VBL apelin receptor 5VBL
ECL1 95 - - - -
ECL1 96 - - - -
ECL1 97 - - - -
TM3 98 3.18x18 P2Y12 receptor 4PXZ - -
TM3 99 3.19x19 P2Y12 receptor 4PXZ - -
TM3 100 3.20x20 P2Y12 receptor 4PXZ - -
TM3 101 3.21x21 κ receptor 6B73 - -
TM3 102 3.22x22 κ receptor 6B73 - -
TM3 103 3.23x23 κ receptor 6B73 5-HT2C receptor 6BQG
TM3 104 3.24x24 κ receptor 6B73 A1 receptor 6D9H
TM3 105 3.25x25 κ receptor 6B73 - -
TM3 106 3.26x26 κ receptor 6B73 - -
TM3 107 3.27x27 κ receptor 6B73 NOP receptor 5DHG
TM3 108 3.28x28 κ receptor 6B73 US28 4XT1
TM3 109 3.29x29 κ receptor 6B73 AT1 receptor 4ZUD
TM3 110 3.30x30 κ receptor 6B73 CXCR4 3ODU
TM3 111 3.31x31 κ receptor 6B73 - -
TM3 112 3.32x32 κ receptor 6B73 US28 4XT1
TM3 113 3.33x33 κ receptor 6B73 A1 receptor 6D9H
TM3 114 3.34x34 κ receptor 6B73 AT1 receptor 4ZUD
TM3 115 3.35x35 κ receptor 6B73 Rhodopsin 5DYS
TM3 116 3.36x36 κ receptor 6B73 CCR2 5T1A
TM3 117 3.37x37 κ receptor 6B73 M2 receptor 4MQT
TM3 118 3.38x38 κ receptor 6B73 κ receptor 6B73
TM3 119 3.39x39 κ receptor 6B73 CCR5 5UIW
TM3 120 3.40x40 κ receptor 6B73 US28 4XT1
TM3 121 3.41x41 κ receptor 6B73 - -
TM3 122 3.42x42 κ receptor 6B73 AT1 receptor 4ZUD
TM3 123 3.43x43 κ receptor 6B73 κ receptor 6B73
TM3 124 3.44x44 κ receptor 6B73 κ receptor 6B73
TM3 125 3.45x45 κ receptor 6B73 A1 receptor 6D9H
TM3 126 3.46x46 κ receptor 6B73 A1 receptor 6D9H
TM3 127 3.47x47 κ receptor 6B73 κ receptor 6B73
TM3 128 3.48x48 κ receptor 6B73 κ receptor 6B73
TM3 129 3.49x49 κ receptor 6B73 NTS1 receptor 5T04
TM3 130 3.50x50 κ receptor 6B73 κ receptor 6B73
TM3 131 3.51x51 κ receptor 6B73 - -
TM3 132 3.52x52 κ receptor 6B73 A1 receptor 6D9H
TM3 133 3.53x53 κ receptor 6B73 AT2 receptor 5UNG
TM3 134 3.54x54 κ receptor 6B73 κ receptor 6B73
TM3 135 3.55x55 κ receptor 6B73 - -
TM3 136 3.56x56 κ receptor 6B73 AT2 receptor 5UNG
ICL2 137 34.50x50 κ receptor 6B73 κ receptor 6B73
ICL2 138 34.51x51 κ receptor 6B73 C5a1 receptor 6C1R
ICL2 139 34.52x52 κ receptor 6B73 C5a1 receptor 5O9H
ICL2 140 34.53x53 κ receptor 6B73 A1 receptor 6D9H
ICL2 141 34.54x54 κ receptor 6B73 LPA6 receptor 5XSZ
ICL2 142 34.55x55 κ receptor 6B73 - -
ICL2 143 34.56x56 κ receptor 6B73 - -
ICL2 144 34.57x57 κ receptor 6B73 κ receptor 6B73
TM4 145 4.38x38 κ receptor 6B73 US28 4XT1
TM4 146 4.39x39 κ receptor 6B73 β2-adrenoceptor 3SN6
TM4 147 4.40x40 κ receptor 6B73 - -
TM4 148 4.41x41 κ receptor 6B73 AT2 receptor 5UNG
TM4 149 4.42x42 κ receptor 6B73 CCR9 5LWE
TM4 150 4.43x43 κ receptor 6B73 A1 receptor 6D9H
TM4 151 4.44x44 κ receptor 6B73 US28 4XT1
TM4 152 4.45x45 κ receptor 6B73 μ receptor 5C1M
TM4 153 4.46x46 κ receptor 6B73 LPA6 receptor 5XSZ
TM4 154 4.47x47 κ receptor 6B73 A1 receptor 6D9H
TM4 155 4.48x48 κ receptor 6B73 AT2 receptor 5UNG
TM4 156 4.49x49 κ receptor 6B73 apelin receptor 5VBL
TM4 157 4.50x50 κ receptor 6B73 κ receptor 6B73
TM4 158 4.51x51 κ receptor 6B73 5-HT2C receptor 6BQG
TM4 159 4.52x52 κ receptor 6B73 κ receptor 6B73
TM4 160 4.53x53 κ receptor 6B73 κ receptor 6B73
TM4 161 4.54x54 κ receptor 6B73 AT2 receptor 5UNG
TM4 162 4.55x55 κ receptor 6B73 AT2 receptor 5UNG
TM4 163 4.56x56 κ receptor 6B73 κ receptor 6B73
TM4 164 4.57x57 κ receptor 6B73 PAR2 5NDD
TM4 165 4.58x58 κ receptor 6B73 - -
TM4 166 4.59x59 κ receptor 6B73 apelin receptor 5VBL
TM4 167 4.60x60 κ receptor 6B73 - -
TM4 168 4.61x61 κ receptor 6B73 - -
TM4 169 4.62x62 κ receptor 6B73 κ receptor 6B73
TM4 170 4.63x63 κ receptor 6B73 μ receptor 5C1M
TM4 171 4.64x64 κ receptor 6B73 - -
ECL2 172 - - - -
ECL2 173 - - - -
ECL2 174 - - - -
ECL2 175 - - - -
ECL2 176 - - - -
ECL2 177 - - - -
ECL2 178 - - - -
ECL2 179 - - - -
ECL2 180 - - - -
ECL2 181 - - - -
ECL2 182 - - - -
ECL2 183 - - - -
ECL2 184 - - - -
TM5 185 5.34x35 κ receptor 6B73 C5a1 receptor 5O9H
TM5 186 5.35x36 κ receptor 6B73 PAR1 3VW7
TM5 187 5.36x37 κ receptor 6B73 apelin receptor 5VBL
TM5 188 5.37x38 κ receptor 6B73 US28 4XT1
TM5 189 5.38x39 κ receptor 6B73 AT2 receptor 5UNG
TM5 190 5.39x40 κ receptor 6B73 PAR2 5NDD
TM5 191 5.40x41 κ receptor 6B73 κ receptor 6B73
TM5 192 5.41x42 κ receptor 6B73 β2-adrenoceptor 3SN6
TM5 193 5.42x43 κ receptor 6B73 LPA6 receptor 5XSZ
TM5 194 5.43x44 κ receptor 6B73 C5a1 receptor 5O9H
TM5 195 5.44x45 κ receptor 6B73 ETB receptor 5X93
TM5 196 5.45x46 κ receptor 6B73 κ receptor 6B73
TM5 197 5.46x461 κ receptor 6B73 FFA1 receptor 5TZY
TM5 198 5.47x47 κ receptor 6B73 A1 receptor 6D9H
TM5 199 5.48x48 κ receptor 6B73 PAF receptor 5ZKP
TM5 200 5.49x49 κ receptor 6B73 5-HT2B receptor 5TUD
TM5 201 5.50x50 κ receptor 6B73 κ receptor 6B73
TM5 202 5.51x51 κ receptor 6B73 AT2 receptor 5UNG
TM5 203 5.52x52 κ receptor 6B73 - -
TM5 204 5.53x53 κ receptor 6B73 A1 receptor 6D9H
TM5 205 5.54x54 κ receptor 6B73 P2Y12 receptor 4NTJ
TM5 206 5.55x55 κ receptor 6B73 US28 4XT1
TM5 207 5.56x56 κ receptor 6B73 PAR2 5NDD
TM5 208 5.57x57 κ receptor 6B73 5-HT2C receptor 6BQG
TM5 209 5.58x58 κ receptor 6B73 - -
TM5 210 5.59x59 κ receptor 6B73 A1 receptor 6D9H
TM5 211 5.60x60 κ receptor 6B73 NTS1 receptor 5T04
TM5 212 5.61x61 κ receptor 6B73 A1 receptor 6D9H
TM5 213 5.62x62 κ receptor 6B73 - -
TM5 214 5.63x63 κ receptor 6B73 Y1 receptor 5ZBH
TM5 215 5.64x64 κ receptor 6B73 κ receptor 6B73
TM5 216 5.65x65 κ receptor 6B73 - -
TM5 217 5.66x66 κ receptor 6B73 - -
TM5 218 5.67x67 κ receptor 6B73 S1P1 receptor 3V2Y
TM5 219 5.68x68 κ receptor 4DJH D4 receptor 5WIV
ICL3 220 - - - -
ICL3 221 - - - -
ICL3 222 - - - -
TM6 223 6.30x30 κ receptor 6B73 C5a1 receptor 6C1R
TM6 224 6.31x31 κ receptor 6B73 - -
TM6 225 6.32x32 κ receptor 6B73 A1 receptor 6D9H
TM6 226 6.33x33 κ receptor 6B73 CB1 receptor 5XRA
TM6 227 6.34x34 κ receptor 6B73 - -
TM6 228 6.35x35 κ receptor 6B73 PAR2 5NDD
TM6 229 6.36x36 κ receptor 6B73 US28 4XT1
TM6 230 6.37x37 κ receptor 6B73 LPA6 receptor 5XSZ
TM6 231 6.38x38 κ receptor 6B73 AT1 receptor 4ZUD
TM6 232 6.39x39 κ receptor 6B73 κ receptor 6B73
TM6 233 6.40x40 κ receptor 6B73 PAF receptor 5ZKP
TM6 234 6.41x41 κ receptor 6B73 CXCR4 3ODU
TM6 235 6.42x42 κ receptor 6B73 NTS1 receptor 5T04
TM6 236 6.43x43 κ receptor 6B73 LPA6 receptor 5XSZ
TM6 237 6.44x44 κ receptor 6B73 κ receptor 6B73
TM6 238 6.45x45 κ receptor 6B73 5-HT2C receptor 6BQG
TM6 239 6.46x46 κ receptor 6B73 AT2 receptor 5UNG
TM6 240 6.47x47 κ receptor 6B73 US28 4XT1
TM6 241 6.48x48 κ receptor 6B73 - -
TM6 242 6.49x49 κ receptor 6B73 apelin receptor 5VBL
TM6 243 6.50x50 κ receptor 6B73 κ receptor 6B73
TM6 244 6.51x51 κ receptor 6B73 - -
TM6 245 6.52x52 κ receptor 6B73 - -
TM6 246 6.53x53 κ receptor 6B73 US28 4XT1
TM6 247 6.54x54 κ receptor 6B73 AT2 receptor 5UNG
TM6 248 6.55x55 κ receptor 6B73 - -
TM6 249 6.56x56 κ receptor 6B73 κ receptor 6B73
TM6 250 6.57x57 κ receptor 6B73 AT2 receptor 5UNG
TM6 251 6.58x58 κ receptor 6B73 LPA6 receptor 5XSZ
TM6 252 6.59x59 κ receptor 6B73 PAR2 5NDD
TM6 253 6.60x60 κ receptor 6B73 - -
TM6 254 6.61x61 κ receptor 6B73 FFA1 receptor 5TZY
ECL3 255 - - - -
ECL3 256 κ receptor 6B73 - -
ECL3 257 κ receptor 6B73 - -
ECL3 258 κ receptor 6B73 - -
TM7 259 7.32x31 κ receptor 6B73 FFA1 receptor 5TZY
TM7 260 7.33x32 κ receptor 6B73 apelin receptor 5VBL
TM7 261 7.34x33 κ receptor 6B73 A1 receptor 6D9H
TM7 262 7.35x34 κ receptor 6B73 PAF receptor 5ZKP
TM7 263 7.36x35 κ receptor 6B73 μ receptor 5C1M
TM7 264 7.37x36 κ receptor 6B73 A1 receptor 6D9H
TM7 265 7.38x37 κ receptor 6B73 OX2 receptor 5WS3
TM7 266 7.39x38 κ receptor 6B73 LPA6 receptor 5XSZ
TM7 267 7.40x39 κ receptor 6B73 AT2 receptor 5UNG
TM7 268 7.41x40 κ receptor 6B73 Rhodopsin 5DYS
TM7 269 7.42x41 κ receptor 6B73 A2A receptor 5G53
TM7 270 7.43x42 κ receptor 6B73 PAR2 5NDD
TM7 271 7.44x43 κ receptor 6B73 M2 receptor 4MQT
TM7 272 7.45x45 κ receptor 6B73 κ receptor 6B73
TM7 273 7.46x46 κ receptor 6B73 κ receptor 6B73
TM7 274 7.47x47 κ receptor 6B73 κ receptor 6B73
TM7 275 7.48x48 κ receptor 6B73 OX2 receptor 5WS3
TM7 276 7.49x49 κ receptor 6B73 κ receptor 6B73
TM7 277 7.50x50 κ receptor 6B73 κ receptor 6B73
TM7 278 7.51x51 κ receptor 6B73 AT2 receptor 5UNG
TM7 279 7.52x52 PAR2 5NDD A2A receptor 5G53
TM7 280 7.53x53 PAR2 5NDD PAR2 5NDD
TM7 281 7.54x54 PAR2 5NDD P2Y1 receptor 4XNW
TM7 282 7.55x55 PAR2 5NDD PAR2 5NDD
TM7 283 7.56x56 PAR2 5NDD PAR2 5NDD
H8 284 8.47x47 PAR2 5NDD US28 4XT1
H8 285 8.48x48 PAR2 5NDD - -
H8 286 8.49x49 PAR2 5NDD P2Y12 receptor 4NTJ
H8 287 8.50x50 PAR2 5NDD - -
H8 288 8.51x51 PAR2 5NDD 5-HT1B receptor 6G79
H8 289 8.52x52 PAR2 5NDD H1 receptor 3RZE
H8 290 8.53x53 PAR2 5NDD - -
H8 291 8.54x54 PAR2 5NDD A1 receptor 6D9H
H8 292 8.55x55 PAR2 5NDD M2 receptor 4MQT
H8 293 8.56x56 PAR2 5NDD β2-adrenoceptor 3SN6
H8 294 8.57x57 PAR2 5NDD - -
H8 295 8.58x58 PAR2 5NDD US28 4XT1
H8 296 8.59x59 apelin receptor 5VBL CCR9 5LWE
H8 297 8.60x60 apelin receptor 5VBL - -
H8 298 8.61x61 apelin receptor 5VBL - -
C-term 299 - - - -
C-term 300 - - - -
C-term 301 - - - -
C-term 302 - - - -
C-term 303 - - - -