MRGPRD homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Intermediate (Δ distance (Å): 5.11 docs)

VERSION

2018-07-10

MAIN TEMPLATE

P2Y1 receptor (sequence similarity: 36%) PDB: 4XNW

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 78.6 10.9 10.5
Side-chains 13.8 58.7 27.5

Number of backbone templates: 4
Number of rotamer templates: 41

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5O9H
4XNW
4ZJ8
3VG9
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 19 - - - -
N-term 20 - - - -
N-term 21 - - - -
N-term 22 - - - -
N-term 23 - - - -
TM1 24 1.29x29 C5a1 receptor 5O9H - -
TM1 25 1.30x30 P2Y1 receptor 4XNW ETB receptor 5X93
TM1 26 1.31x31 P2Y1 receptor 4XNW CCR5 5UIW
TM1 27 1.32x32 P2Y1 receptor 4XNW PAF receptor 5ZKQ
TM1 28 1.33x33 P2Y1 receptor 4XNW PAR1 3VW7
TM1 29 1.34x34 P2Y1 receptor 4XNW A2A receptor 4UHR
TM1 30 1.35x35 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM1 31 1.36x36 P2Y1 receptor 4XNW LPA6 receptor 5XSZ
TM1 32 1.37x37 P2Y1 receptor 4XNW PAR1 3VW7
TM1 33 1.38x38 P2Y1 receptor 4XNW P2Y12 receptor 4NTJ
TM1 34 1.39x39 P2Y1 receptor 4XNW M2 receptor 3UON
TM1 35 1.40x40 P2Y1 receptor 4XNW apelin receptor 5VBL
TM1 36 1.41x41 P2Y1 receptor 4XNW M3 receptor 4U15
TM1 37 1.42x42 P2Y1 receptor 4XNW - -
TM1 38 1.43x43 P2Y1 receptor 4XNW μ receptor 5C1M
TM1 39 1.44x44 P2Y1 receptor 4XNW 5-HT1B receptor 4IAQ
TM1 40 1.45x45 P2Y1 receptor 4XNW - -
TM1 41 1.46x46 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM1 42 1.47x47 P2Y1 receptor 4XNW LPA1 receptor 4Z35
TM1 43 1.48x48 P2Y1 receptor 4XNW D4 receptor 5WIV
TM1 44 1.49x49 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM1 45 1.50x50 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM1 46 1.51x51 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM1 47 1.52x52 P2Y1 receptor 4XNW PAR2 5NDD
TM1 48 1.53x53 P2Y1 receptor 4XNW μ receptor 6DDE
TM1 49 1.54x54 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM1 50 1.55x55 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM1 51 1.56x56 P2Y1 receptor 4XNW AT2 receptor 5UNG
TM1 52 1.57x57 P2Y1 receptor 4XNW NTS1 receptor 4XES
TM1 53 1.58x58 P2Y1 receptor 4XNW CXCR4 3ODU
TM1 54 1.59x59 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM1 55 1.60x60 P2Y1 receptor 4XNW PAR2 5NDD
ICL1 56 - - - -
ICL1 57 C5a1 receptor 5O9H - -
ICL1 58 - - - -
TM2 59 2.37x37 P2Y1 receptor 4XNW A2A receptor 4UHR
TM2 60 2.38x38 P2Y1 receptor 4XNW PAR2 5NDD
TM2 61 2.39x39 P2Y1 receptor 4XNW P2Y12 receptor 4NTJ
TM2 62 2.40x40 P2Y1 receptor 4XNW - -
TM2 63 2.41x41 P2Y1 receptor 4XNW PAR2 5NDD
TM2 64 2.42x42 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM2 65 2.43x43 P2Y1 receptor 4XNW μ receptor 6DDE
TM2 66 2.44x44 P2Y1 receptor 4XNW PAR1 3VW7
TM2 67 2.45x45 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM2 68 2.46x46 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM2 69 2.47x47 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM2 70 2.48x48 P2Y1 receptor 4XNW A2A receptor 4UHR
TM2 71 2.49x49 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM2 72 2.50x50 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM2 73 2.51x51 P2Y1 receptor 4XNW PAR2 5NDD
TM2 74 2.52x52 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM2 75 2.53x53 P2Y1 receptor 4XNW PAR1 3VW7
TM2 76 2.54x54 P2Y1 receptor 4XNW NTS1 receptor 4XES
TM2 77 2.55x55 P2Y1 receptor 4XNW Rhodopsin 5DYS
TM2 78 2.56x56 P2Y1 receptor 4XNW FFA1 receptor 5TZY
TM2 79 2.57x57 P2Y1 receptor 4XNW NTS1 receptor 4XES
TM2 80 2.58x58 P2Y1 receptor 4XNW - -
TM2 81 2.59x59 P2Y1 receptor 4XNW Rhodopsin 4ZWJ
TM2 82 2.60x60 P2Y1 receptor 4XNW OX2 receptor 5WS3
TM2 83 2.61x61 P2Y1 receptor 4XNW NTS1 receptor 4XES
TM2 84 2.62x62 P2Y1 receptor 4XNW PAR1 3VW7
TM2 85 2.63x63 P2Y1 receptor 4XNW S1P1 receptor 3V2Y
TM2 86 2.64x64 P2Y1 receptor 4XNW D2 receptor 6CM4
TM2 87 2.65x65 P2Y1 receptor 4XNW A2A receptor 4UHR
TM2 88 2.66x66 P2Y1 receptor 4XNW C5a1 receptor 5O9H
ECL1 89 - - - -
ECL1 90 OX1 receptor 4ZJ8 - -
ECL1 91 OX1 receptor 4ZJ8 - -
ECL1 92 OX1 receptor 4ZJ8 - -
ECL1 93 - - - -
TM3 94 3.21x21 P2Y1 receptor 4XNW S1P1 receptor 3V2Y
TM3 95 3.22x22 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM3 96 3.23x23 P2Y1 receptor 4XNW - -
TM3 97 3.24x24 P2Y1 receptor 4XNW P2Y12 receptor 4NTJ
TM3 98 3.25x25 P2Y1 receptor 4XNW - -
TM3 99 3.26x26 P2Y1 receptor 4XNW β2-adrenoceptor 3SN6
TM3 100 3.27x27 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM3 101 3.28x28 P2Y1 receptor 4XNW - -
TM3 102 3.29x29 P2Y1 receptor 4XNW - -
TM3 103 3.30x30 P2Y1 receptor 4XNW - -
TM3 104 3.31x31 P2Y1 receptor 4XNW NTS1 receptor 4XES
TM3 105 3.32x32 P2Y1 receptor 4XNW S1P1 receptor 3V2Y
TM3 106 3.33x33 P2Y1 receptor 4XNW PAR2 5NDD
TM3 107 3.34x34 P2Y1 receptor 4XNW P2Y12 receptor 4NTJ
TM3 108 3.35x35 P2Y1 receptor 4XNW US28 4XT1
TM3 109 3.36x36 P2Y1 receptor 4XNW CCR2 5T1A
TM3 110 3.37x37 P2Y1 receptor 4XNW 5-HT1B receptor 4IAQ
TM3 111 3.38x38 P2Y1 receptor 4XNW OX1 receptor 4ZJ8
TM3 112 3.39x39 P2Y1 receptor 4XNW FFA1 receptor 5TZY
TM3 113 3.40x40 P2Y1 receptor 4XNW US28 4XT1
TM3 114 3.41x41 P2Y1 receptor 4XNW P2Y12 receptor 4NTJ
TM3 115 3.42x42 P2Y1 receptor 4XNW PAR1 3VW7
TM3 116 3.43x43 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM3 117 3.44x44 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM3 118 3.45x45 P2Y1 receptor 4XNW A2A receptor 4UHR
TM3 119 3.46x46 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM3 120 3.47x47 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM3 121 3.48x48 P2Y1 receptor 4XNW - -
TM3 122 3.49x49 P2Y1 receptor 4XNW PAR2 5NDD
TM3 123 3.50x50 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM3 124 3.51x51 P2Y1 receptor 4XNW - -
TM3 125 3.52x52 P2Y1 receptor 4XNW PAR1 3VW7
TM3 126 3.53x53 P2Y1 receptor 4XNW AT2 receptor 5UNG
TM3 127 3.54x54 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM3 128 3.55x55 P2Y1 receptor 4XNW - -
TM3 129 3.56x56 P2Y1 receptor 4XNW FFA1 receptor 5TZY
ICL2 130 34.50x50 - - - -
ICL2 131 34.51x51 C5a1 receptor 5O9H C5a1 receptor 6C1R
ICL2 132 34.52x52 C5a1 receptor 5O9H C5a1 receptor 5O9H
ICL2 133 34.53x53 C5a1 receptor 5O9H - -
ICL2 134 34.54x54 C5a1 receptor 5O9H NTS1 receptor 4XES
ICL2 135 34.55x55 C5a1 receptor 5O9H - -
ICL2 136 34.56x56 C5a1 receptor 5O9H - -
ICL2 137 34.57x57 - - - -
TM4 138 4.38x38 P2Y1 receptor 4XNW US28 4XT1
TM4 139 4.39x39 P2Y1 receptor 4XNW NTS1 receptor 4XES
TM4 140 4.40x40 P2Y1 receptor 4XNW - -
TM4 141 4.41x41 P2Y1 receptor 4XNW C5a1 receptor 5O9H
TM4 142 4.42x42 P2Y1 receptor 4XNW FFA1 receptor 5TZY
TM4 143 4.43x43 P2Y1 receptor 4XNW 5-HT1B receptor 4IAQ
TM4 144 4.44x44 P2Y1 receptor 4XNW BLT1 receptor 5X33
TM4 145 4.45x45 P2Y1 receptor 4XNW μ receptor 6DDE
TM4 146 4.46x46 P2Y1 receptor 4XNW PAR1 3VW7
TM4 147 4.47x47 P2Y1 receptor 4XNW M3 receptor 4U15
TM4 148 4.48x48 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM4 149 4.49x49 P2Y1 receptor 4XNW apelin receptor 5VBL
TM4 150 4.50x50 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM4 151 4.51x51 P2Y1 receptor 4XNW CB1 receptor 5XRA
TM4 152 4.52x52 P2Y1 receptor 4XNW PAR2 5NDD
TM4 153 4.53x53 P2Y1 receptor 4XNW - -
TM4 154 4.54x54 P2Y1 receptor 4XNW PAR2 5NDD
TM4 155 4.55x55 P2Y1 receptor 4XNW PAR2 5NDD
TM4 156 4.56x56 P2Y1 receptor 4XNW LPA1 receptor 4Z35
TM4 157 4.57x57 P2Y1 receptor 4XNW - -
TM4 158 4.58x58 P2Y1 receptor 4XNW FFA1 receptor 5TZY
TM4 159 4.59x59 P2Y1 receptor 4XNW FFA1 receptor 5TZY
TM4 160 4.60x60 P2Y1 receptor 4XNW LPA6 receptor 5XSZ
TM4 161 4.61x61 P2Y1 receptor 4XNW C5a1 receptor 5O9H
TM4 162 4.62x62 P2Y1 receptor 4XNW - -
TM4 163 4.63x63 P2Y1 receptor 4XNW NTS1 receptor 4XES
TM4 164 4.64x64 P2Y1 receptor 4XNW - -
ECL2 165 - - - -
ECL2 166 - - - -
ECL2 167 - - - -
ECL2 168 - - - -
ECL2 169 - - - -
ECL2 170 - - - -
ECL2 171 - - - -
ECL2 172 - - - -
TM5 173 5.31x32 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM5 174 5.32x33 P2Y1 receptor 4XNW - -
TM5 175 5.33x34 P2Y1 receptor 4XNW - -
TM5 176 5.34x35 P2Y1 receptor 4XNW - -
TM5 177 5.35x36 P2Y1 receptor 4XNW Y1 receptor 5ZBH
TM5 178 5.36x37 P2Y1 receptor 4XNW CXCR4 3ODU
TM5 179 5.37x38 P2Y1 receptor 4XNW 5-HT2B receptor 4IB4
TM5 180 5.38x39 P2Y1 receptor 4XNW κ receptor 4DJH
TM5 181 5.39x40 P2Y1 receptor 4XNW LPA6 receptor 5XSZ
TM5 182 5.40x41 P2Y1 receptor 4XNW NTS1 receptor 4XES
TM5 183 5.41x42 P2Y1 receptor 4XNW β2-adrenoceptor 3SN6
TM5 184 5.42x43 P2Y1 receptor 4XNW - -
TM5 185 5.43x44 P2Y1 receptor 4XNW C5a1 receptor 5O9H
TM5 186 5.44x45 P2Y1 receptor 4XNW PAR2 5NDD
TM5 187 5.45x46 P2Y1 receptor 4XNW NTS1 receptor 4XES
TM5 188 5.46x461 P2Y1 receptor 4XNW C5a1 receptor 5O9H
TM5 189 5.47x47 P2Y1 receptor 4XNW A2A receptor 4UHR
TM5 190 5.48x48 P2Y1 receptor 4XNW PAR2 5NDD
TM5 191 5.49x49 P2Y1 receptor 4XNW 5-HT2B receptor 4IB4
TM5 192 5.50x50 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM5 193 5.51x51 P2Y1 receptor 4XNW μ receptor 6DDE
TM5 194 5.52x52 P2Y1 receptor 4XNW - -
TM5 195 5.53x53 P2Y1 receptor 4XNW C5a1 receptor 5O9H
TM5 196 5.54x54 P2Y1 receptor 4XNW 5-HT1B receptor 4IAQ
TM5 197 5.55x55 P2Y1 receptor 4XNW NTS1 receptor 4XES
TM5 198 5.56x56 P2Y1 receptor 4XNW PAR2 5NDD
TM5 199 5.57x57 P2Y1 receptor 4XNW NTS1 receptor 4XES
TM5 200 5.58x58 P2Y1 receptor 4XNW - -
TM5 201 5.59x59 P2Y1 receptor 4XNW A2A receptor 4UHR
TM5 202 5.60x60 P2Y1 receptor 4XNW C5a1 receptor 5O9H
TM5 203 5.61x61 P2Y1 receptor 4XNW LPA6 receptor 5XSZ
TM5 204 5.62x62 P2Y1 receptor 4XNW AT1 receptor 4YAY
TM5 205 5.63x63 P2Y1 receptor 4XNW 5-HT1B receptor 4IAQ
TM5 206 5.64x64 P2Y1 receptor 4XNW μ receptor 6DDE
TM5 207 5.65x65 P2Y1 receptor 4XNW - -
TM5 208 5.66x66 P2Y1 receptor 4XNW PAR1 3VW7
TM5 209 5.67x67 P2Y1 receptor 4XNW μ receptor 6DDE
TM5 210 5.68x68 P2Y1 receptor 4XNW - -
ICL3 211 - - - -
ICL3 212 - - - -
ICL3 213 - - - -
TM6 214 6.28x28 OX1 receptor 4ZJ8 OX1 receptor 4ZJ8
TM6 215 6.29x29 P2Y1 receptor 4XNW CXCR4 3ODU
TM6 216 6.30x30 P2Y1 receptor 4XNW - -
TM6 217 6.31x31 P2Y1 receptor 4XNW C5a1 receptor 6C1R
TM6 218 6.32x32 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM6 219 6.33x33 P2Y1 receptor 4XNW FFA1 receptor 5KW2
TM6 220 6.34x34 P2Y1 receptor 4XNW AT1 receptor 4ZUD
TM6 221 6.35x35 P2Y1 receptor 4XNW - -
TM6 222 6.36x36 P2Y1 receptor 4XNW NTS1 receptor 4XES
TM6 223 6.37x37 P2Y1 receptor 4XNW μ receptor 6DDE
TM6 224 6.38x38 P2Y1 receptor 4XNW μ receptor 6DDE
TM6 225 6.39x39 P2Y1 receptor 4XNW PAR1 3VW7
TM6 226 6.40x40 P2Y1 receptor 4XNW - -
TM6 227 6.41x41 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM6 228 6.42x42 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM6 229 6.43x43 P2Y1 receptor 4XNW μ receptor 6DDE
TM6 230 6.44x44 P2Y1 receptor 4XNW NTS1 receptor 4XES
TM6 231 6.45x45 P2Y1 receptor 4XNW FFA1 receptor 5TZY
TM6 232 6.46x46 C5a1 receptor 5O9H C5a1 receptor 5O9H
TM6 233 6.47x47 C5a1 receptor 5O9H PAR2 5NDD
TM6 234 6.48x48 P2Y1 receptor 4XNW - -
TM6 235 6.49x49 P2Y1 receptor 4XNW NTS1 receptor 4XES
TM6 236 6.50x50 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM6 237 6.51x51 P2Y1 receptor 4XNW A2A receptor 4UHR
TM6 238 6.52x52 P2Y1 receptor 4XNW OX1 receptor 4ZJ8
TM6 239 6.53x53 P2Y1 receptor 4XNW μ receptor 6DDE
TM6 240 6.54x54 P2Y1 receptor 4XNW μ receptor 6DDE
TM6 241 6.55x55 P2Y1 receptor 4XNW - -
TM6 242 6.56x56 P2Y1 receptor 4XNW AT1 receptor 4ZUD
TM6 243 6.57x57 P2Y1 receptor 4XNW PAR2 5NDD
TM6 244 6.58x58 P2Y1 receptor 4XNW FFA1 receptor 5KW2
TM6 245 6.59x59 P2Y1 receptor 4XNW PAR2 5NDD
TM6 246 6.60x60 P2Y1 receptor 4XNW Y1 receptor 5ZBH
TM6 247 6.61x61 P2Y1 receptor 4XNW PAR2 5NDD
ECL3 248 - - - -
ECL3 249 A2A receptor 3VG9 - -
ECL3 250 A2A receptor 3VG9 - -
ECL3 251 A2A receptor 3VG9 - -
ECL3 252 A2A receptor 3VG9 - -
ECL3 253 - - - -
TM7 254 7.31x30 P2Y1 receptor 4XNW μ receptor 6DDE
TM7 255 7.32x31 P2Y1 receptor 4XNW NOP receptor 5DHG
TM7 256 7.33x32 P2Y1 receptor 4XNW AT2 receptor 5UNG
TM7 257 7.34x33 P2Y1 receptor 4XNW OX1 receptor 4ZJ8
TM7 258 7.35x34 P2Y1 receptor 4XNW 5-HT1B receptor 4IAQ
TM7 259 7.36x35 P2Y1 receptor 4XNW C5a1 receptor 5O9H
TM7 260 7.37x36 P2Y1 receptor 4XNW PAR1 3VW7
TM7 261 7.38x37 P2Y1 receptor 4XNW OX1 receptor 4ZJ8
TM7 262 7.39x38 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM7 263 7.40x39 P2Y1 receptor 4XNW AT2 receptor 5UNG
TM7 264 7.41x40 P2Y1 receptor 4XNW - -
TM7 265 7.42x41 P2Y1 receptor 4XNW PAR2 5NDD
TM7 266 7.43x42 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM7 267 7.44x43 P2Y1 receptor 4XNW 5-HT2B receptor 4IB4
TM7 268 7.45x45 P2Y1 receptor 4XNW PAR1 3VW7
TM7 269 7.46x46 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM7 270 7.47x47 P2Y1 receptor 4XNW κ receptor 4DJH
TM7 271 7.48x48 P2Y1 receptor 4XNW OX1 receptor 4ZJ8
TM7 272 7.49x49 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM7 273 7.50x50 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM7 274 7.51x51 P2Y1 receptor 4XNW μ receptor 6DDE
TM7 275 7.52x52 P2Y1 receptor 4XNW PAR1 3VW7
TM7 276 7.53x53 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM7 277 7.54x54 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM7 278 7.55x55 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
TM7 279 7.56x56 C5a1 receptor 5O9H PAR2 5NDD
H8 280 8.47x47 OX1 receptor 4ZJ8 AT2 receptor 5UNG
H8 281 8.48x48 OX1 receptor 4ZJ8 - -
H8 282 8.49x49 OX1 receptor 4ZJ8 AT2 receptor 5UNG
H8 283 8.50x50 OX1 receptor 4ZJ8 - -
H8 284 8.51x51 OX1 receptor 4ZJ8 LPA1 receptor 4Z35
H8 285 8.52x52 OX1 receptor 4ZJ8 CB1 receptor 5XRA
H8 286 8.53x53 OX1 receptor 4ZJ8 - -
H8 287 8.54x54 OX1 receptor 4ZJ8 AT2 receptor 5UNG
H8 288 8.55x55 OX1 receptor 4ZJ8 - -
H8 289 8.56x56 OX1 receptor 4ZJ8 Rhodopsin 5DYS
C-term 290 - - - -
C-term 291 - - - -
C-term 292 - - - -
C-term 293 - - - -
C-term 294 - - - -