NPBW1 receptor homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Inactive (Δ distance (Å): -1.56 docs)

VERSION

2018-07-10

MAIN TEMPLATE

δ receptor (sequence similarity: 57%) PDB: 4N6H

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 93.5 1.6 4.9
Side-chains 35.5 44.3 20.2

Number of backbone templates: 3
Number of rotamer templates: 41

NGL is a WebGL based 3D viewer powered by MMTF.

4N6H
4ZUD
5C1M
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 22 - - - -
N-term 23 - - - -
N-term 24 δ receptor 4N6H δ receptor 4N6H
N-term 25 δ receptor 4N6H δ receptor 4N6H
N-term 26 δ receptor 4N6H δ receptor 4N6H
TM1 27 1.22x22 δ receptor 4N6H - -
TM1 28 1.23x23 δ receptor 4N6H - -
TM1 29 1.24x24 δ receptor 4N6H - -
TM1 30 1.25x25 δ receptor 4N6H - -
TM1 31 1.26x26 δ receptor 4N6H - -
TM1 32 1.27x27 δ receptor 4N6H - -
TM1 33 1.28x28 δ receptor 4N6H A2A receptor 5IU4
TM1 34 1.29x29 δ receptor 4N6H - -
TM1 35 1.30x30 δ receptor 4N6H 5-HT1B receptor 4IAQ
TM1 36 1.31x31 δ receptor 4N6H δ receptor 4N6H
TM1 37 1.32x32 δ receptor 4N6H δ receptor 4N6H
TM1 38 1.33x33 δ receptor 4N6H κ receptor 4DJH
TM1 39 1.34x34 δ receptor 4N6H δ receptor 4N6H
TM1 40 1.35x35 δ receptor 4N6H NTS1 receptor 4BUO
TM1 41 1.36x36 δ receptor 4N6H AT1 receptor 4ZUD
TM1 42 1.37x37 δ receptor 4N6H C5a1 receptor 5O9H
TM1 43 1.38x38 δ receptor 4N6H κ receptor 4DJH
TM1 44 1.39x39 δ receptor 4N6H δ receptor 4N6H
TM1 45 1.40x40 δ receptor 4N6H C5a1 receptor 5O9H
TM1 46 1.41x41 δ receptor 4N6H κ receptor 4DJH
TM1 47 1.42x42 δ receptor 4N6H AT1 receptor 4ZUD
TM1 48 1.43x43 δ receptor 4N6H δ receptor 4N6H
TM1 49 1.44x44 δ receptor 4N6H δ receptor 4N6H
TM1 50 1.45x45 δ receptor 4N6H δ receptor 4N6H
TM1 51 1.46x46 δ receptor 4N6H δ receptor 4N6H
TM1 52 1.47x47 δ receptor 4N6H δ receptor 4N6H
TM1 53 1.48x48 δ receptor 4N6H D4 receptor 5WIV
TM1 54 1.49x49 δ receptor 4N6H δ receptor 4N6H
TM1 55 1.50x50 δ receptor 4N6H δ receptor 4N6H
TM1 56 1.51x51 δ receptor 4N6H κ receptor 4DJH
TM1 57 1.52x52 δ receptor 4N6H Y1 receptor 5ZBH
TM1 58 1.53x53 δ receptor 4N6H δ receptor 4N6H
TM1 59 1.54x54 δ receptor 4N6H apelin receptor 5VBL
TM1 60 1.55x55 δ receptor 4N6H μ receptor 4DKL
TM1 61 1.56x56 δ receptor 4N6H κ receptor 4DJH
TM1 62 1.57x57 δ receptor 4N6H CCR5 5UIW
TM1 63 1.58x58 δ receptor 4N6H NOP receptor 5DHG
TM1 64 1.59x59 δ receptor 4N6H δ receptor 4N6H
TM1 65 1.60x60 δ receptor 4N6H - -
ICL1 66 12.48x48 δ receptor 4N6H - -
ICL1 67 12.49x49 δ receptor 4N6H β2-adrenoceptor 5JQH
ICL1 68 12.50x50 δ receptor 4N6H δ receptor 4N6H
ICL1 69 12.51x51 δ receptor 4N6H δ receptor 4N6H
TM2 70 2.37x37 δ receptor 4N6H δ receptor 4N6H
TM2 71 2.38x38 δ receptor 4N6H AT1 receptor 4ZUD
TM2 72 2.39x39 δ receptor 4N6H δ receptor 4N6H
TM2 73 2.40x40 δ receptor 4N6H δ receptor 4N6H
TM2 74 2.41x41 δ receptor 4N6H H1 receptor 3RZE
TM2 75 2.42x42 δ receptor 4N6H AT1 receptor 4ZUD
TM2 76 2.43x43 δ receptor 4N6H δ receptor 4N6H
TM2 77 2.44x44 δ receptor 4N6H AT1 receptor 4ZUD
TM2 78 2.45x45 δ receptor 4N6H δ receptor 4N6H
TM2 79 2.46x46 δ receptor 4N6H δ receptor 4N6H
TM2 80 2.47x47 δ receptor 4N6H δ receptor 4N6H
TM2 81 2.48x48 δ receptor 4N6H CCR5 5UIW
TM2 82 2.49x49 δ receptor 4N6H δ receptor 4N6H
TM2 83 2.50x50 δ receptor 4N6H δ receptor 4N6H
TM2 84 2.51x51 δ receptor 4N6H - -
TM2 85 2.52x52 δ receptor 4N6H δ receptor 4N6H
TM2 86 2.53x53 δ receptor 4N6H AT1 receptor 4ZUD
TM2 87 2.54x54 δ receptor 4N6H δ receptor 4N6H
TM2 88 2.55x55 δ receptor 4N6H NOP receptor 5DHG
TM2 89 2.56x56 δ receptor 4N6H H1 receptor 3RZE
TM2 90 2.57x57 δ receptor 4N6H δ receptor 4N6H
TM2 91 2.58x58 δ receptor 4N6H δ receptor 4N6H
TM2 92 2.59x59 δ receptor 4N6H C5a1 receptor 6C1R
TM2 93 2.60x60 δ receptor 4N6H ETB receptor 5X93
TM2 94 2.61x61 δ receptor 4N6H H1 receptor 3RZE
TM2 95 2.62x62 δ receptor 4N6H δ receptor 4N6H
TM2 96 2.63x63 δ receptor 4N6H NOP receptor 5DHG
TM2 97 2.64x64 δ receptor 4N6H NTS1 receptor 4BUO
TM2 98 2.65x65 δ receptor 4N6H δ receptor 4N6H
TM2 99 2.66x66 δ receptor 4N6H NOP receptor 5DHG
ECL1 100 δ receptor 4N6H - -
ECL1 101 23.49x49 δ receptor 4N6H CCR5 5UIW
ECL1 102 23.50x50 δ receptor 4N6H δ receptor 4N6H
ECL1 103 23.51x51 δ receptor 4N6H δ receptor 4N6H
ECL1 104 23.52x52 δ receptor 4N6H δ receptor 4N6H
TM3 105 3.21x21 δ receptor 4N6H δ receptor 4N6H
TM3 106 3.22x22 δ receptor 4N6H δ receptor 4N6H
TM3 107 3.23x23 δ receptor 4N6H δ receptor 4N6H
TM3 108 3.24x24 δ receptor 4N6H CCR5 5UIW
TM3 109 3.25x25 δ receptor 4N6H δ receptor 4N6H
TM3 110 3.26x26 δ receptor 4N6H δ receptor 4N6H
TM3 111 3.27x27 δ receptor 4N6H CCR5 5UIW
TM3 112 3.28x28 δ receptor 4N6H OX2 receptor 5WS3
TM3 113 3.29x29 δ receptor 4N6H D2 receptor 6CM4
TM3 114 3.30x30 δ receptor 4N6H NOP receptor 5DHG
TM3 115 3.31x31 δ receptor 4N6H δ receptor 4N6H
TM3 116 3.32x32 δ receptor 4N6H δ receptor 4N6H
TM3 117 3.33x33 δ receptor 4N6H - -
TM3 118 3.34x34 δ receptor 4N6H δ receptor 4N6H
TM3 119 3.35x35 δ receptor 4N6H δ receptor 4N6H
TM3 120 3.36x36 δ receptor 4N6H NTS1 receptor 4BUO
TM3 121 3.37x37 δ receptor 4N6H δ receptor 4N6H
TM3 122 3.38x38 δ receptor 4N6H CCR5 5UIW
TM3 123 3.39x39 δ receptor 4N6H δ receptor 4N6H
TM3 124 3.40x40 δ receptor 4N6H Rhodopsin 1GZM
TM3 125 3.41x41 δ receptor 4N6H - -
TM3 126 3.42x42 δ receptor 4N6H CCR5 5UIW
TM3 127 3.43x43 δ receptor 4N6H δ receptor 4N6H
TM3 128 3.44x44 δ receptor 4N6H δ receptor 4N6H
TM3 129 3.45x45 δ receptor 4N6H β2-adrenoceptor 5JQH
TM3 130 3.46x46 δ receptor 4N6H δ receptor 4N6H
TM3 131 3.47x47 δ receptor 4N6H δ receptor 4N6H
TM3 132 3.48x48 δ receptor 4N6H C5a1 receptor 5O9H
TM3 133 3.49x49 δ receptor 4N6H δ receptor 4N6H
TM3 134 3.50x50 δ receptor 4N6H δ receptor 4N6H
TM3 135 3.51x51 δ receptor 4N6H δ receptor 4N6H
TM3 136 3.52x52 δ receptor 4N6H AT1 receptor 4ZUD
TM3 137 3.53x53 δ receptor 4N6H Rhodopsin 1GZM
TM3 138 3.54x54 δ receptor 4N6H δ receptor 4N6H
TM3 139 3.55x55 δ receptor 4N6H - -
TM3 140 3.56x56 δ receptor 4N6H - -
ICL2 141 - - - -
ICL2 142 - - - -
ICL2 143 - - - -
ICL2 144 - - - -
ICL2 145 - - - -
ICL2 146 - - - -
ICL2 147 - - - -
ICL2 148 - - - -
ICL2 149 - - - -
ICL2 150 - - - -
TM4 151 4.38x38 δ receptor 4N6H δ receptor 4N6H
TM4 152 4.39x39 δ receptor 4N6H - -
TM4 153 4.40x40 δ receptor 4N6H NOP receptor 5DHG
TM4 154 4.41x41 δ receptor 4N6H CXCR4 3ODU
TM4 155 4.42x42 δ receptor 4N6H δ receptor 4N6H
TM4 156 4.43x43 δ receptor 4N6H OX2 receptor 5WS3
TM4 157 4.44x44 δ receptor 4N6H NOP receptor 5DHG
TM4 158 4.45x45 δ receptor 4N6H μ receptor 4DKL
TM4 159 4.46x46 δ receptor 4N6H CCR5 5UIW
TM4 160 4.47x47 δ receptor 4N6H OX1 receptor 4ZJ8
TM4 161 4.48x48 δ receptor 4N6H NOP receptor 5DHG
TM4 162 4.49x49 δ receptor 4N6H CXCR4 3ODU
TM4 163 4.50x50 δ receptor 4N6H δ receptor 4N6H
TM4 164 4.51x51 δ receptor 4N6H C5a1 receptor 5O9H
TM4 165 4.52x52 δ receptor 4N6H 5-HT2C receptor 6BQH
TM4 166 4.53x53 δ receptor 4N6H LPA6 receptor 5XSZ
TM4 167 4.54x54 δ receptor 4N6H - -
TM4 168 4.55x55 δ receptor 4N6H AT1 receptor 4ZUD
TM4 169 4.56x56 δ receptor 4N6H δ receptor 4N6H
TM4 170 4.57x57 AT1 receptor 4ZUD PAR1 3VW7
TM4 171 4.58x59 AT1 receptor 4ZUD AT1 receptor 4ZUD
TM4 172 4.59x60 δ receptor 4N6H AT1 receptor 4ZUD
TM4 173 4.60x61 δ receptor 4N6H Y1 receptor 5ZBH
TM4 174 4.61x62 δ receptor 4N6H C5a1 receptor 5O9H
TM4 175 4.62x63 δ receptor 4N6H apelin receptor 5VBL
TM4 176 4.63x64 δ receptor 4N6H - -
TM4 177 4.64x65 AT1 receptor 4ZUD CXCR4 3ODU
ECL2 178 δ receptor 4N6H - -
ECL2 179 δ receptor 4N6H - -
ECL2 180 δ receptor 4N6H - -
ECL2 181 δ receptor 4N6H - -
ECL2 182 δ receptor 4N6H - -
ECL2 183 δ receptor 4N6H - -
ECL2 184 δ receptor 4N6H δ receptor 4N6H
ECL2 185 δ receptor 4N6H - -
ECL2 186 δ receptor 4N6H - -
ECL2 187 δ receptor 4N6H - -
ECL2 188 45.50x50 δ receptor 4N6H δ receptor 4N6H
ECL2 189 45.51x51 δ receptor 4N6H 5-HT2C receptor 6BQH
ECL2 190 45.52x52 δ receptor 4N6H δ receptor 4N6H
ECL2 191 δ receptor 4N6H - -
ECL2 192 δ receptor 4N6H δ receptor 4N6H
ECL2 193 δ receptor 4N6H δ receptor 4N6H
ECL2 194 δ receptor 4N6H - -
ECL2 195 δ receptor 4N6H δ receptor 4N6H
TM5 196 5.31x32 δ receptor 4N6H apelin receptor 5VBL
TM5 197 5.32x33 δ receptor 4N6H AT2 receptor 5UNG
TM5 198 5.33x34 δ receptor 4N6H CCR5 5UIW
TM5 199 5.34x35 δ receptor 4N6H δ receptor 4N6H
TM5 200 5.35x36 δ receptor 4N6H - -
TM5 201 5.36x37 δ receptor 4N6H C5a1 receptor 5O9H
TM5 202 5.37x38 δ receptor 4N6H C5a1 receptor 5O9H
TM5 203 5.38x39 δ receptor 4N6H - -
TM5 204 5.39x40 δ receptor 4N6H FFA1 receptor 5TZY
TM5 205 5.40x41 δ receptor 4N6H AT1 receptor 4ZUD
TM5 206 5.41x42 δ receptor 4N6H D2 receptor 6CM4
TM5 207 5.42x43 δ receptor 4N6H H1 receptor 3RZE
TM5 208 5.43x44 δ receptor 4N6H C5a1 receptor 5O9H
TM5 209 5.44x45 δ receptor 4N6H C5a1 receptor 5O9H
TM5 210 5.45x46 δ receptor 4N6H AT1 receptor 4YAY
TM5 211 5.46x461 δ receptor 4N6H AT1 receptor 4ZUD
TM5 212 5.47x47 δ receptor 4N6H δ receptor 4N6H
TM5 213 5.48x48 δ receptor 4N6H - -
TM5 214 5.49x49 δ receptor 4N6H κ receptor 4DJH
TM5 215 5.50x50 δ receptor 4N6H δ receptor 4N6H
TM5 216 5.51x51 δ receptor 4N6H κ receptor 4DJH
TM5 217 5.52x52 δ receptor 4N6H US28 4XT1
TM5 218 5.53x53 δ receptor 4N6H C5a1 receptor 5O9H
TM5 219 5.54x54 δ receptor 4N6H δ receptor 4N6H
TM5 220 5.55x55 δ receptor 4N6H M1 receptor 5CXV
TM5 221 5.56x56 δ receptor 4N6H δ receptor 4N6H
TM5 222 5.57x57 δ receptor 4N6H M4 receptor 5DSG
TM5 223 5.58x58 δ receptor 4N6H δ receptor 4N6H
TM5 224 5.59x59 δ receptor 4N6H κ receptor 4DJH
TM5 225 5.60x60 δ receptor 4N6H - -
TM5 226 5.61x61 δ receptor 4N6H Rhodopsin 1GZM
TM5 227 5.62x62 δ receptor 4N6H δ receptor 4N6H
TM5 228 5.63x63 δ receptor 4N6H ETB receptor 5X93
TM5 229 5.64x64 δ receptor 4N6H δ receptor 4N6H
TM5 230 5.65x65 δ receptor 4N6H δ receptor 4N6H
TM5 231 5.66x66 δ receptor 4N6H CB1 receptor 5TGZ
TM5 232 5.67x67 δ receptor 4N6H - -
TM5 233 5.68x68 δ receptor 4N6H - -
ICL3 234 δ receptor 4N6H δ receptor 4N6H
ICL3 235 δ receptor 4N6H δ receptor 4N6H
ICL3 236 δ receptor 4N6H - -
ICL3 237 δ receptor 4N6H δ receptor 4N6H
ICL3 238 δ receptor 4N6H - -
TM6 239 6.23x23 δ receptor 4N6H A2A receptor 3VG9
TM6 240 6.24x24 δ receptor 4N6H δ receptor 4RWD
TM6 241 6.25x25 δ receptor 4N6H - -
TM6 242 6.26x26 δ receptor 4N6H FFA1 receptor 5TZR
TM6 243 6.27x27 δ receptor 4N6H - -
TM6 244 6.28x28 δ receptor 4N6H NOP receptor 5DHG
TM6 245 6.29x29 δ receptor 4N6H OX2 receptor 5WS3
TM6 246 6.30x30 δ receptor 4N6H CXCR4 3ODU
TM6 247 6.31x31 δ receptor 4N6H Y1 receptor 5ZBH
TM6 248 6.32x32 δ receptor 4N6H δ receptor 4N6H
TM6 249 6.33x33 δ receptor 4N6H ETB receptor 5X93
TM6 250 6.34x34 δ receptor 4N6H δ receptor 4N6H
TM6 251 6.35x35 δ receptor 4N6H - -
TM6 252 6.36x36 δ receptor 4N6H κ receptor 4DJH
TM6 253 6.37x37 δ receptor 4N6H δ receptor 4N6H
TM6 254 6.38x38 δ receptor 4N6H CXCR4 3ODU
TM6 255 6.39x39 δ receptor 4N6H AT1 receptor 4ZUD
TM6 256 6.40x40 δ receptor 4N6H AT1 receptor 4ZUD
TM6 257 6.41x41 δ receptor 4N6H CCR9 5LWE
TM6 258 6.42x42 δ receptor 4N6H κ receptor 4DJH
TM6 259 6.43x43 δ receptor 4N6H κ receptor 4DJH
TM6 260 6.44x44 δ receptor 4N6H - -
TM6 261 6.45x45 δ receptor 4N6H D4 receptor 5WIV
TM6 262 6.46x46 δ receptor 4N6H CCR5 5UIW
TM6 263 6.47x47 δ receptor 4N6H δ receptor 4N6H
TM6 264 6.48x48 δ receptor 4N6H δ receptor 4N6H
TM6 265 6.49x49 δ receptor 4N6H κ receptor 4DJH
TM6 266 6.50x50 δ receptor 4N6H δ receptor 4N6H
TM6 267 6.51x51 δ receptor 4N6H CCR5 5UIW
TM6 268 6.52x52 δ receptor 4N6H δ receptor 4N6H
TM6 269 6.53x53 δ receptor 4N6H apelin receptor 5VBL
TM6 270 6.54x54 δ receptor 4N6H FFA1 receptor 5TZY
TM6 271 6.55x55 δ receptor 4N6H AT1 receptor 4ZUD
TM6 272 6.56x56 δ receptor 4N6H OX2 receptor 5WS3
TM6 273 6.57x57 δ receptor 4N6H δ receptor 4N6H
TM6 274 6.58x58 δ receptor 4N6H - -
TM6 275 6.59x59 δ receptor 4N6H ETB receptor 5X93
TM6 276 6.60x60 δ receptor 4N6H ETB receptor 5X93
TM6 277 6.61x61 δ receptor 4N6H - -
ECL3 278 - - - -
ECL3 279 μ receptor 5C1M - -
ECL3 280 μ receptor 5C1M μ receptor 5C1M
ECL3 281 - - - -
TM7 282 7.28x27 δ receptor 4N6H μ receptor 4DKL
TM7 283 7.29x28 δ receptor 4N6H δ receptor 4N6H
TM7 284 7.30x29 δ receptor 4N6H δ receptor 4N6H
TM7 285 7.31x30 δ receptor 4N6H δ receptor 4N6H
TM7 286 7.32x31 δ receptor 4N6H - -
TM7 287 7.33x32 δ receptor 4N6H δ receptor 4N6H
TM7 288 7.34x33 δ receptor 4N6H NOP receptor 5DHG
TM7 289 7.35x34 δ receptor 4N6H FFA1 receptor 5KW2
TM7 290 7.36x35 δ receptor 4N6H κ receptor 4DJH
TM7 291 7.37x36 δ receptor 4N6H κ receptor 4DJH
TM7 292 7.38x37 δ receptor 4N6H - -
TM7 293 7.39x38 δ receptor 4N6H NOP receptor 5DHG
TM7 294 7.40x39 δ receptor 4N6H C5a1 receptor 5O9H
TM7 295 7.41x40 δ receptor 4N6H δ receptor 4N6H
TM7 296 7.42x41 δ receptor 4N6H apelin receptor 5VBL
TM7 297 7.43x42 δ receptor 4N6H δ receptor 4N6H
TM7 298 7.44x43 δ receptor 4N6H δ receptor 4N6H
TM7 299 7.45x45 δ receptor 4N6H δ receptor 4N6H
TM7 300 7.46x46 δ receptor 4N6H δ receptor 4N6H
TM7 301 7.47x47 δ receptor 4N6H μ receptor 4DKL
TM7 302 7.48x48 δ receptor 4N6H δ receptor 4N6H
TM7 303 7.49x49 δ receptor 4N6H δ receptor 4N6H
TM7 304 7.50x50 δ receptor 4N6H δ receptor 4N6H
TM7 305 7.51x51 δ receptor 4N6H apelin receptor 5VBL
TM7 306 7.52x52 δ receptor 4N6H δ receptor 4N6H
TM7 307 7.53x53 δ receptor 4N6H δ receptor 4N6H
TM7 308 7.54x54 δ receptor 4N6H δ receptor 4N6H
TM7 309 7.55x55 δ receptor 4N6H δ receptor 4N6H
TM7 310 7.56x56 δ receptor 4N6H δ receptor 4N6H
H8 311 8.47x47 δ receptor 4N6H δ receptor 4N6H
H8 312 8.48x48 δ receptor 4N6H M4 receptor 5DSG
H8 313 8.49x49 δ receptor 4N6H P2Y12 receptor 4NTJ
H8 314 8.50x50 δ receptor 4N6H δ receptor 4N6H
H8 315 8.51x51 δ receptor 4N6H CCR5 5UIW
H8 316 8.52x52 δ receptor 4N6H δ receptor 4N6H
H8 317 8.53x53 δ receptor 4N6H - -
H8 318 8.54x54 δ receptor 4N6H CCR5 5UIW
H8 319 8.55x55 δ receptor 4N6H δ receptor 4RWD
H8 320 8.56x56 δ receptor 4N6H LPA1 receptor 4Z36
H8 321 8.57x57 δ receptor 4N6H δ receptor 4N6H
H8 322 8.58x58 δ receptor 4N6H A2A receptor 3VG9
H8 323 8.59x59 δ receptor 4N6H 5-HT2B receptor 5TUD
H8 324 8.60x60 δ receptor 4N6H OX2 receptor 5WS3
C-term 325 δ receptor 4N6H δ receptor 4N6H
C-term 326 δ receptor 4N6H δ receptor 4N6H
C-term 327 δ receptor 4N6H δ receptor 4N6H
C-term 328 - - - -