NPBW1 receptor homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Intermediate (Δ distance (Å): 7.25 docs)

VERSION

2018-07-10

MAIN TEMPLATE

μ receptor (sequence similarity: 54%) PDB: 6DDE

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 78.2 13.7 8.1
Side-chains 24.4 52.1 23.5

Number of backbone templates: 4
Number of rotamer templates: 40

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4N6H
6DDE
5C1M
4ZUD
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 22 - - - -
N-term 23 - - - -
N-term 24 - - - -
N-term 25 - - - -
N-term 26 - - - -
TM1 27 1.22x22 δ receptor 4N6H - -
TM1 28 1.23x23 δ receptor 4N6H - -
TM1 29 1.24x24 δ receptor 4N6H - -
TM1 30 1.25x25 δ receptor 4N6H - -
TM1 31 1.26x26 δ receptor 4N6H - -
TM1 32 1.27x27 δ receptor 4N6H - -
TM1 33 1.28x28 δ receptor 4N6H A2A receptor 5IU4
TM1 34 1.29x29 δ receptor 4N6H - -
TM1 35 1.30x30 δ receptor 4N6H 5-HT1B receptor 4IAQ
TM1 36 1.31x31 μ receptor 6DDE PAR1 3VW7
TM1 37 1.32x32 μ receptor 6DDE μ receptor 6DDE
TM1 38 1.33x33 μ receptor 6DDE PAR2 5NDD
TM1 39 1.34x34 μ receptor 6DDE δ receptor 4N6H
TM1 40 1.35x35 μ receptor 6DDE PAR1 3VW7
TM1 41 1.36x36 μ receptor 6DDE PAR1 3VW7
TM1 42 1.37x37 μ receptor 6DDE C5a1 receptor 5O9H
TM1 43 1.38x38 μ receptor 6DDE PAR1 3VW7
TM1 44 1.39x39 μ receptor 6DDE μ receptor 6DDE
TM1 45 1.40x40 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM1 46 1.41x41 μ receptor 6DDE P2Y12 receptor 4NTJ
TM1 47 1.42x42 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM1 48 1.43x43 μ receptor 6DDE δ receptor 4N6H
TM1 49 1.44x44 μ receptor 6DDE FFA1 receptor 5TZY
TM1 50 1.45x45 μ receptor 6DDE μ receptor 6DDE
TM1 51 1.46x46 μ receptor 6DDE μ receptor 6DDE
TM1 52 1.47x47 μ receptor 6DDE PAR1 3VW7
TM1 53 1.48x48 μ receptor 6DDE D4 receptor 5WIV
TM1 54 1.49x49 μ receptor 6DDE μ receptor 6DDE
TM1 55 1.50x50 μ receptor 6DDE μ receptor 6DDE
TM1 56 1.51x51 μ receptor 6DDE P2Y1 receptor 4XNW
TM1 57 1.52x52 μ receptor 6DDE Y1 receptor 5ZBH
TM1 58 1.53x53 μ receptor 6DDE μ receptor 6DDE
TM1 59 1.54x54 μ receptor 6DDE PAR2 5NDD
TM1 60 1.55x55 μ receptor 6DDE μ receptor 6DDE
TM1 61 1.56x56 μ receptor 6DDE μ receptor 6DDE
TM1 62 1.57x57 μ receptor 6DDE NTS1 receptor 4XES
TM1 63 1.58x58 μ receptor 6DDE PAR2 5NDD
TM1 64 1.59x59 μ receptor 6DDE 5-HT1B receptor 5V54
TM1 65 1.60x60 μ receptor 6DDE - -
ICL1 66 12.48x48 - - - -
ICL1 67 12.49x49 δ receptor 4N6H β2-adrenoceptor 5JQH
ICL1 68 12.50x50 δ receptor 4N6H δ receptor 4N6H
ICL1 69 12.51x51 - - - -
TM2 70 2.37x37 δ receptor 4N6H δ receptor 4N6H
TM2 71 2.38x38 μ receptor 6DDE A2A receptor 4UHR
TM2 72 2.39x39 μ receptor 6DDE μ receptor 6DDE
TM2 73 2.40x40 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM2 74 2.41x41 μ receptor 6DDE H1 receptor 3RZE
TM2 75 2.42x42 μ receptor 6DDE 5-HT2B receptor 4IB4
TM2 76 2.43x43 μ receptor 6DDE μ receptor 6DDE
TM2 77 2.44x44 μ receptor 6DDE PAR1 3VW7
TM2 78 2.45x45 μ receptor 6DDE μ receptor 6DDE
TM2 79 2.46x46 μ receptor 6DDE μ receptor 6DDE
TM2 80 2.47x47 μ receptor 6DDE μ receptor 6DDE
TM2 81 2.48x48 μ receptor 6DDE P2Y12 receptor 4NTJ
TM2 82 2.49x49 μ receptor 6DDE μ receptor 6DDE
TM2 83 2.50x50 μ receptor 6DDE μ receptor 6DDE
TM2 84 2.51x51 μ receptor 6DDE - -
TM2 85 2.52x52 μ receptor 6DDE μ receptor 6DDE
TM2 86 2.53x53 μ receptor 6DDE PAR1 3VW7
TM2 87 2.54x54 μ receptor 6DDE FFA1 receptor 5TZY
TM2 88 2.55x55 μ receptor 6DDE 5-HT2B receptor 4IB4
TM2 89 2.56x56 μ receptor 6DDE PAR1 3VW7
TM2 90 2.57x57 μ receptor 6DDE μ receptor 6DDE
TM2 91 2.58x58 μ receptor 6DDE μ receptor 6DDE
TM2 92 2.59x59 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM2 93 2.60x60 μ receptor 6DDE ETB receptor 5X93
TM2 94 2.61x61 μ receptor 6DDE PAR1 3VW7
TM2 95 2.62x62 μ receptor 6DDE PAR2 5NDD
TM2 96 2.63x63 μ receptor 6DDE NOP receptor 5DHG
TM2 97 2.64x64 μ receptor 6DDE NTS1 receptor 4XES
TM2 98 2.65x65 μ receptor 6DDE FFA1 receptor 5TZY
TM2 99 2.66x66 μ receptor 6DDE NOP receptor 5DHG
ECL1 100 - - - -
ECL1 101 23.49x49 δ receptor 4N6H CCR5 5UIW
ECL1 102 23.50x50 δ receptor 4N6H δ receptor 4N6H
ECL1 103 23.51x51 δ receptor 4N6H δ receptor 4N6H
ECL1 104 23.52x52 - - - -
TM3 105 3.21x21 μ receptor 6DDE μ receptor 6DDE
TM3 106 3.22x22 μ receptor 6DDE PAR2 5NDD
TM3 107 3.23x23 μ receptor 6DDE δ receptor 4N6H
TM3 108 3.24x24 μ receptor 6DDE P2Y1 receptor 4XNW
TM3 109 3.25x25 μ receptor 6DDE μ receptor 6DDE
TM3 110 3.26x26 μ receptor 6DDE μ receptor 6DDE
TM3 111 3.27x27 μ receptor 6DDE P2Y1 receptor 4XNW
TM3 112 3.28x28 μ receptor 6DDE A2A receptor 4UHR
TM3 113 3.29x29 μ receptor 6DDE LPA6 receptor 5XSZ
TM3 114 3.30x30 μ receptor 6DDE PAR1 3VW7
TM3 115 3.31x31 μ receptor 6DDE μ receptor 6DDE
TM3 116 3.32x32 μ receptor 6DDE μ receptor 6DDE
TM3 117 3.33x33 μ receptor 6DDE - -
TM3 118 3.34x34 μ receptor 6DDE μ receptor 6DDE
TM3 119 3.35x35 μ receptor 6DDE μ receptor 6DDE
TM3 120 3.36x36 μ receptor 6DDE NTS1 receptor 4XES
TM3 121 3.37x37 μ receptor 6DDE μ receptor 6DDE
TM3 122 3.38x38 μ receptor 6DDE A2A receptor 4UHR
TM3 123 3.39x39 μ receptor 6DDE μ receptor 6DDE
TM3 124 3.40x40 μ receptor 6DDE US28 4XT1
TM3 125 3.41x41 μ receptor 6DDE - -
TM3 126 3.42x42 μ receptor 6DDE PAR2 5NDD
TM3 127 3.43x43 μ receptor 6DDE μ receptor 6DDE
TM3 128 3.44x44 μ receptor 6DDE PAR1 3VW7
TM3 129 3.45x45 μ receptor 6DDE PAR1 3VW7
TM3 130 3.46x46 μ receptor 6DDE μ receptor 6DDE
TM3 131 3.47x47 μ receptor 6DDE μ receptor 6DDE
TM3 132 3.48x48 μ receptor 6DDE P2Y1 receptor 4XNW
TM3 133 3.49x49 μ receptor 6DDE μ receptor 6DDE
TM3 134 3.50x50 μ receptor 6DDE μ receptor 6DDE
TM3 135 3.51x51 μ receptor 6DDE μ receptor 6DDE
TM3 136 3.52x52 μ receptor 6DDE PAR1 3VW7
TM3 137 3.53x53 μ receptor 6DDE Rhodopsin 4ZWJ
TM3 138 3.54x54 μ receptor 6DDE μ receptor 6DDE
TM3 139 3.55x55 μ receptor 6DDE - -
TM3 140 3.56x56 μ receptor 6DDE - -
ICL2 141 - - - -
ICL2 142 - - - -
ICL2 143 - - - -
ICL2 144 - - - -
ICL2 145 - - - -
ICL2 146 - - - -
ICL2 147 - - - -
ICL2 148 - - - -
ICL2 149 - - - -
ICL2 150 - - - -
TM4 151 4.38x38 μ receptor 6DDE μ receptor 6DDE
TM4 152 4.39x39 μ receptor 6DDE - -
TM4 153 4.40x40 μ receptor 6DDE NTS1 receptor 4XES
TM4 154 4.41x41 μ receptor 6DDE CXCR4 3ODU
TM4 155 4.42x42 μ receptor 6DDE μ receptor 6DDE
TM4 156 4.43x43 μ receptor 6DDE OX2 receptor 5WS3
TM4 157 4.44x44 μ receptor 6DDE NOP receptor 5DHG
TM4 158 4.45x45 μ receptor 6DDE μ receptor 6DDE
TM4 159 4.46x46 μ receptor 6DDE PAR2 5NDD
TM4 160 4.47x47 μ receptor 6DDE PAR1 3VW7
TM4 161 4.48x48 μ receptor 6DDE PAR1 3VW7
TM4 162 4.49x49 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM4 163 4.50x50 μ receptor 6DDE μ receptor 6DDE
TM4 164 4.51x51 μ receptor 6DDE C5a1 receptor 5O9H
TM4 165 4.52x52 μ receptor 6DDE 5-HT2B receptor 4IB4
TM4 166 4.53x53 μ receptor 6DDE P2Y1 receptor 4XNW
TM4 167 4.54x54 μ receptor 6DDE - -
TM4 168 4.55x55 μ receptor 6DDE PAR2 5NDD
TM4 169 4.56x56 μ receptor 6DDE PAR2 5NDD
TM4 170 4.57x57 AT1 receptor 4ZUD PAR1 3VW7
TM4 171 4.58x59 AT1 receptor 4ZUD FFA1 receptor 5TZY
TM4 172 4.59x60 μ receptor 6DDE PAR1 3VW7
TM4 173 4.60x61 μ receptor 6DDE FFA1 receptor 5TZY
TM4 174 4.61x62 μ receptor 6DDE C5a1 receptor 5O9H
TM4 175 4.62x63 AT1 receptor 4ZUD PAR2 5NDD
TM4 176 4.63x64 AT1 receptor 4ZUD CCR5 5UIW
TM4 177 4.64x65 AT1 receptor 4ZUD FFA1 receptor 5TZY
ECL2 178 μ receptor 6DDE - -
ECL2 179 μ receptor 6DDE - -
ECL2 180 μ receptor 6DDE - -
ECL2 181 μ receptor 6DDE - -
ECL2 182 μ receptor 6DDE - -
ECL2 183 μ receptor 6DDE - -
ECL2 184 μ receptor 6DDE μ receptor 6DDE
ECL2 185 μ receptor 6DDE - -
ECL2 186 μ receptor 6DDE - -
ECL2 187 μ receptor 6DDE - -
ECL2 188 45.50x50 μ receptor 6DDE μ receptor 6DDE
ECL2 189 45.51x51 μ receptor 6DDE 5-HT1B receptor 4IAQ
ECL2 190 45.52x52 μ receptor 6DDE μ receptor 6DDE
ECL2 191 μ receptor 6DDE - -
ECL2 192 μ receptor 6DDE - -
ECL2 193 μ receptor 6DDE - -
ECL2 194 μ receptor 6DDE - -
ECL2 195 μ receptor 6DDE μ receptor 6DDE
TM5 196 5.31x32 δ receptor 4N6H apelin receptor 5VBL
TM5 197 5.32x33 δ receptor 4N6H AT2 receptor 5UNG
TM5 198 5.33x34 μ receptor 6DDE CCR5 5UIW
TM5 199 5.34x35 μ receptor 6DDE μ receptor 6DDE
TM5 200 5.35x36 μ receptor 6DDE - -
TM5 201 5.36x37 μ receptor 6DDE C5a1 receptor 5O9H
TM5 202 5.37x38 μ receptor 6DDE C5a1 receptor 5O9H
TM5 203 5.38x39 μ receptor 6DDE - -
TM5 204 5.39x40 μ receptor 6DDE FFA1 receptor 5TZY
TM5 205 5.40x41 μ receptor 6DDE PAR2 5NDD
TM5 206 5.41x42 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM5 207 5.42x43 μ receptor 6DDE P2Y1 receptor 4XNW
TM5 208 5.43x44 μ receptor 6DDE C5a1 receptor 5O9H
TM5 209 5.44x45 μ receptor 6DDE PAR1 3VW7
TM5 210 5.45x46 μ receptor 6DDE FFA1 receptor 5TZY
TM5 211 5.46x461 μ receptor 6DDE AT1 receptor 4ZUD
TM5 212 5.47x47 μ receptor 6DDE μ receptor 6DDE
TM5 213 5.48x48 μ receptor 6DDE - -
TM5 214 5.49x49 μ receptor 6DDE P2Y12 receptor 4NTJ
TM5 215 5.50x50 μ receptor 6DDE μ receptor 6DDE
TM5 216 5.51x51 μ receptor 6DDE μ receptor 6DDE
TM5 217 5.52x52 μ receptor 6DDE US28 4XT1
TM5 218 5.53x53 μ receptor 6DDE C5a1 receptor 5O9H
TM5 219 5.54x54 μ receptor 6DDE μ receptor 6DDE
TM5 220 5.55x55 μ receptor 6DDE M1 receptor 5CXV
TM5 221 5.56x56 μ receptor 6DDE μ receptor 6DDE
TM5 222 5.57x57 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM5 223 5.58x58 μ receptor 6DDE μ receptor 6DDE
TM5 224 5.59x59 μ receptor 6DDE NTS1 receptor 4XES
TM5 225 5.60x60 μ receptor 6DDE - -
TM5 226 5.61x61 μ receptor 6DDE Rhodopsin 4ZWJ
TM5 227 5.62x62 μ receptor 6DDE FFA1 receptor 5TZY
TM5 228 5.63x63 μ receptor 6DDE ETB receptor 5X93
TM5 229 5.64x64 μ receptor 6DDE μ receptor 6DDE
TM5 230 5.65x65 μ receptor 6DDE μ receptor 6DDE
TM5 231 5.66x66 μ receptor 6DDE CB1 receptor 5XRA
TM5 232 5.67x67 μ receptor 6DDE - -
TM5 233 5.68x68 μ receptor 6DDE - -
ICL3 234 μ receptor 6DDE μ receptor 6DDE
ICL3 235 μ receptor 6DDE - -
ICL3 236 μ receptor 6DDE - -
ICL3 237 μ receptor 6DDE μ receptor 6DDE
ICL3 238 μ receptor 6DDE - -
TM6 239 6.23x23 μ receptor 6DDE A2A receptor 3VG9
TM6 240 6.24x24 μ receptor 6DDE δ receptor 4RWD
TM6 241 6.25x25 μ receptor 6DDE - -
TM6 242 6.26x26 μ receptor 6DDE FFA1 receptor 5TZR
TM6 243 6.27x27 μ receptor 6DDE - -
TM6 244 6.28x28 μ receptor 6DDE μ receptor 6DDE
TM6 245 6.29x29 μ receptor 6DDE NTS1 receptor 4XES
TM6 246 6.30x30 μ receptor 6DDE PAR1 3VW7
TM6 247 6.31x31 μ receptor 6DDE PAR1 3VW7
TM6 248 6.32x32 μ receptor 6DDE μ receptor 6DDE
TM6 249 6.33x33 μ receptor 6DDE AT2 receptor 5UNG
TM6 250 6.34x34 μ receptor 6DDE μ receptor 6DDE
TM6 251 6.35x35 μ receptor 6DDE - -
TM6 252 6.36x36 μ receptor 6DDE κ receptor 4DJH
TM6 253 6.37x37 μ receptor 6DDE μ receptor 6DDE
TM6 254 6.38x38 μ receptor 6DDE P2Y1 receptor 4XNW
TM6 255 6.39x39 μ receptor 6DDE PAR1 3VW7
TM6 256 6.40x40 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM6 257 6.41x41 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM6 258 6.42x42 μ receptor 6DDE μ receptor 6DDE
TM6 259 6.43x43 μ receptor 6DDE μ receptor 6DDE
TM6 260 6.44x44 μ receptor 6DDE - -
TM6 261 6.45x45 μ receptor 6DDE 5-HT2B receptor 4IB4
TM6 262 6.46x46 μ receptor 6DDE PAR2 5NDD
TM6 263 6.47x47 μ receptor 6DDE PAR1 3VW7
TM6 264 6.48x48 μ receptor 6DDE μ receptor 6DDE
TM6 265 6.49x49 μ receptor 6DDE PAR2 5NDD
TM6 266 6.50x50 μ receptor 6DDE μ receptor 6DDE
TM6 267 6.51x51 μ receptor 6DDE NTS1 receptor 4XES
TM6 268 6.52x52 μ receptor 6DDE μ receptor 6DDE
TM6 269 6.53x53 μ receptor 6DDE PAR2 5NDD
TM6 270 6.54x54 μ receptor 6DDE FFA1 receptor 5TZY
TM6 271 6.55x55 μ receptor 6DDE AT1 receptor 4ZUD
TM6 272 6.56x56 μ receptor 6DDE PAR2 5NDD
TM6 273 6.57x57 μ receptor 6DDE PAR2 5NDD
TM6 274 6.58x58 μ receptor 6DDE - -
TM6 275 6.59x59 μ receptor 6DDE P2Y1 receptor 4XNW
TM6 276 6.60x60 μ receptor 6DDE ETB receptor 5X93
TM6 277 6.61x61 μ receptor 6DDE - -
ECL3 278 - - - -
ECL3 279 μ receptor 5C1M - -
ECL3 280 μ receptor 5C1M μ receptor 5C1M
ECL3 281 - - - -
TM7 282 7.28x27 δ receptor 4N6H PAR1 3VW7
TM7 283 7.29x28 δ receptor 4N6H δ receptor 4N6H
TM7 284 7.30x29 μ receptor 6DDE δ receptor 4N6H
TM7 285 7.31x30 μ receptor 6DDE PAR2 5NDD
TM7 286 7.32x31 μ receptor 6DDE - -
TM7 287 7.33x32 μ receptor 6DDE PAR2 5NDD
TM7 288 7.34x33 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM7 289 7.35x34 μ receptor 6DDE FFA1 receptor 5KW2
TM7 290 7.36x35 μ receptor 6DDE A2A receptor 4UHR
TM7 291 7.37x36 μ receptor 6DDE μ receptor 6DDE
TM7 292 7.38x37 μ receptor 6DDE - -
TM7 293 7.39x38 μ receptor 6DDE 5-HT1B receptor 4IAQ
TM7 294 7.40x39 μ receptor 6DDE C5a1 receptor 5O9H
TM7 295 7.41x40 μ receptor 6DDE μ receptor 6DDE
TM7 296 7.42x41 μ receptor 6DDE PAR1 3VW7
TM7 297 7.43x42 μ receptor 6DDE μ receptor 6DDE
TM7 298 7.44x43 μ receptor 6DDE NTS1 receptor 4XES
TM7 299 7.45x45 μ receptor 6DDE μ receptor 6DDE
TM7 300 7.46x46 μ receptor 6DDE μ receptor 6DDE
TM7 301 7.47x47 μ receptor 6DDE μ receptor 6DDE
TM7 302 7.48x48 μ receptor 6DDE μ receptor 6DDE
TM7 303 7.49x49 μ receptor 6DDE μ receptor 6DDE
TM7 304 7.50x50 μ receptor 6DDE μ receptor 6DDE
TM7 305 7.51x51 μ receptor 6DDE PAR2 5NDD
TM7 306 7.52x52 μ receptor 6DDE μ receptor 6DDE
TM7 307 7.53x53 μ receptor 6DDE μ receptor 6DDE
TM7 308 7.54x54 μ receptor 6DDE μ receptor 6DDE
TM7 309 7.55x55 δ receptor 4N6H δ receptor 4N6H
TM7 310 7.56x56 δ receptor 4N6H δ receptor 4N6H
H8 311 8.47x47 δ receptor 4N6H δ receptor 4N6H
H8 312 8.48x48 δ receptor 4N6H M4 receptor 5DSG
H8 313 8.49x49 δ receptor 4N6H P2Y12 receptor 4NTJ
H8 314 8.50x50 δ receptor 4N6H PAR2 5NDD
H8 315 8.51x51 δ receptor 4N6H PAR2 5NDD
H8 316 8.52x52 δ receptor 4N6H δ receptor 4N6H
H8 317 8.53x53 δ receptor 4N6H - -
H8 318 8.54x54 δ receptor 4N6H CCR5 5UIW
H8 319 8.55x55 δ receptor 4N6H A2A receptor 4UHR
H8 320 8.56x56 δ receptor 4N6H LPA1 receptor 4Z36
H8 321 8.57x57 δ receptor 4N6H 5-HT1B receptor 4IAQ
H8 322 8.58x58 δ receptor 4N6H 5-HT1B receptor 4IAQ
H8 323 8.59x59 δ receptor 4N6H 5-HT2B receptor 5TUD
H8 324 8.60x60 δ receptor 4N6H OX2 receptor 5WS3
C-term 325 - - - -
C-term 326 - - - -
C-term 327 - - - -
C-term 328 - - - -