NPBW2 receptor homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Active (Δ distance (Å): 9.66 docs)

VERSION

2018-07-10

MAIN TEMPLATE

κ receptor (sequence similarity: 57%) PDB: 6B73

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 77.0 13.8 9.2
Side-chains 29.3 49.3 21.4

Number of backbone templates: 4
Number of rotamer templates: 39

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4N6H
6B73
4DJH
4ZUD
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 30 - - - -
N-term 31 - - - -
N-term 32 - - - -
N-term 33 - - - -
N-term 34 - - - -
TM1 35 1.22x22 δ receptor 4N6H - -
TM1 36 1.23x23 δ receptor 4N6H - -
TM1 37 1.24x24 δ receptor 4N6H US28 4XT1
TM1 38 1.25x25 δ receptor 4N6H δ receptor 4N6H
TM1 39 1.26x26 δ receptor 4N6H CXCR4 4RWS
TM1 40 1.27x27 δ receptor 4N6H - -
TM1 41 1.28x28 δ receptor 4N6H US28 4XT1
TM1 42 1.29x29 δ receptor 4N6H Rhodopsin 5DYS
TM1 43 1.30x30 κ receptor 6B73 M2 receptor 4MQS
TM1 44 1.31x31 κ receptor 6B73 δ receptor 4N6H
TM1 45 1.32x32 κ receptor 6B73 PAF receptor 5ZKP
TM1 46 1.33x33 κ receptor 6B73 κ receptor 6B73
TM1 47 1.34x34 κ receptor 6B73 LPA6 receptor 5XSZ
TM1 48 1.35x35 κ receptor 6B73 5-HT1B receptor 6G79
TM1 49 1.36x36 κ receptor 6B73 AT2 receptor 5UNG
TM1 50 1.37x37 κ receptor 6B73 κ receptor 6B73
TM1 51 1.38x38 κ receptor 6B73 κ receptor 6B73
TM1 52 1.39x39 κ receptor 6B73 κ receptor 6B73
TM1 53 1.40x40 κ receptor 6B73 κ receptor 6B73
TM1 54 1.41x41 κ receptor 6B73 PAR1 3VW7
TM1 55 1.42x42 κ receptor 6B73 β2-adrenoceptor 3SN6
TM1 56 1.43x43 κ receptor 6B73 μ receptor 5C1M
TM1 57 1.44x44 κ receptor 6B73 δ receptor 4N6H
TM1 58 1.45x45 κ receptor 6B73 κ receptor 6B73
TM1 59 1.46x46 κ receptor 6B73 κ receptor 6B73
TM1 60 1.47x47 κ receptor 6B73 κ receptor 6B73
TM1 61 1.48x48 κ receptor 6B73 apelin receptor 5VBL
TM1 62 1.49x49 κ receptor 6B73 κ receptor 6B73
TM1 63 1.50x50 κ receptor 6B73 κ receptor 6B73
TM1 64 1.51x51 κ receptor 6B73 5-HT2B receptor 5TUD
TM1 65 1.52x52 κ receptor 6B73 LPA6 receptor 5XSZ
TM1 66 1.53x53 κ receptor 6B73 κ receptor 6B73
TM1 67 1.54x54 κ receptor 6B73 US28 4XT1
TM1 68 1.55x55 κ receptor 6B73 5-HT2B receptor 5TUD
TM1 69 1.56x56 κ receptor 6B73 κ receptor 6B73
TM1 70 1.57x57 κ receptor 6B73 κ receptor 6B73
TM1 71 1.58x58 κ receptor 6B73 CB1 receptor 5XRA
TM1 72 1.59x59 κ receptor 6B73 μ receptor 5C1M
TM1 73 1.60x60 κ receptor 6B73 - -
ICL1 74 12.48x48 - - - -
ICL1 75 12.49x49 δ receptor 4N6H δ receptor 4N6H
ICL1 76 12.50x50 δ receptor 4N6H δ receptor 4N6H
ICL1 77 12.51x51 - - - -
TM2 78 2.37x37 κ receptor 6B73 κ receptor 6B73
TM2 79 2.38x38 κ receptor 6B73 β2-adrenoceptor 3SN6
TM2 80 2.39x39 κ receptor 6B73 κ receptor 6B73
TM2 81 2.40x40 κ receptor 6B73 κ receptor 6B73
TM2 82 2.41x41 κ receptor 6B73 US28 4XT1
TM2 83 2.42x42 κ receptor 6B73 β2-adrenoceptor 3SN6
TM2 84 2.43x43 κ receptor 6B73 κ receptor 6B73
TM2 85 2.44x44 κ receptor 6B73 Rhodopsin 5DYS
TM2 86 2.45x45 κ receptor 6B73 κ receptor 6B73
TM2 87 2.46x46 κ receptor 6B73 κ receptor 6B73
TM2 88 2.47x47 κ receptor 6B73 κ receptor 6B73
TM2 89 2.48x48 κ receptor 6B73 LPA6 receptor 5XSZ
TM2 90 2.49x49 κ receptor 6B73 κ receptor 6B73
TM2 91 2.50x50 κ receptor 6B73 κ receptor 6B73
TM2 92 2.51x51 κ receptor 6B73 - -
TM2 93 2.52x52 κ receptor 6B73 κ receptor 6B73
TM2 94 2.53x53 κ receptor 6B73 LPA6 receptor 5XSZ
TM2 95 2.54x54 κ receptor 6B73 κ receptor 6B73
TM2 96 2.55x55 κ receptor 6B73 LPA6 receptor 5XSZ
TM2 97 2.56x56 κ receptor 6B73 β2-adrenoceptor 3SN6
TM2 98 2.57x57 κ receptor 6B73 μ receptor 5C1M
TM2 99 2.58x58 κ receptor 6B73 κ receptor 6B73
TM2 100 2.59x59 κ receptor 6B73 NTS1 receptor 5T04
TM2 101 2.60x60 κ receptor 6B73 ETB receptor 5X93
TM2 102 2.61x61 κ receptor 6B73 A1 receptor 6D9H
TM2 103 2.62x62 κ receptor 6B73 β2-adrenoceptor 3SN6
TM2 104 2.63x63 κ receptor 6B73 FFA1 receptor 5TZY
TM2 105 2.64x64 κ receptor 6B73 PAR2 5NDD
TM2 106 2.65x65 κ receptor 6B73 κ receptor 6B73
TM2 107 2.66x66 κ receptor 6B73 NOP receptor 5DHG
ECL1 108 - - - -
ECL1 109 23.49x49 δ receptor 4N6H M2 receptor 4MQT
ECL1 110 23.50x50 δ receptor 4N6H δ receptor 4N6H
ECL1 111 23.51x51 δ receptor 4N6H δ receptor 4N6H
ECL1 112 23.52x52 - - - -
TM3 113 3.21x21 κ receptor 6B73 κ receptor 6B73
TM3 114 3.22x22 κ receptor 6B73 δ receptor 4N6H
TM3 115 3.23x23 κ receptor 6B73 δ receptor 4N6H
TM3 116 3.24x24 κ receptor 6B73 κ receptor 6B73
TM3 117 3.25x25 κ receptor 6B73 κ receptor 6B73
TM3 118 3.26x26 κ receptor 6B73 κ receptor 6B73
TM3 119 3.27x27 κ receptor 6B73 LPA6 receptor 5XSZ
TM3 120 3.28x28 κ receptor 6B73 κ receptor 6B73
TM3 121 3.29x29 κ receptor 6B73 κ receptor 6B73
TM3 122 3.30x30 κ receptor 6B73 US28 4XT1
TM3 123 3.31x31 κ receptor 6B73 Y1 receptor 5ZBH
TM3 124 3.32x32 κ receptor 6B73 κ receptor 6B73
TM3 125 3.33x33 κ receptor 6B73 CCR2 5T1A
TM3 126 3.34x34 κ receptor 6B73 κ receptor 6B73
TM3 127 3.35x35 κ receptor 6B73 κ receptor 6B73
TM3 128 3.36x36 κ receptor 6B73 Y1 receptor 5ZBH
TM3 129 3.37x37 κ receptor 6B73 κ receptor 6B73
TM3 130 3.38x38 κ receptor 6B73 A1 receptor 6D9H
TM3 131 3.39x39 κ receptor 6B73 κ receptor 6B73
TM3 132 3.40x40 κ receptor 6B73 κ receptor 6B73
TM3 133 3.41x41 κ receptor 6B73 - -
TM3 134 3.42x42 κ receptor 6B73 LPA6 receptor 5XSZ
TM3 135 3.43x43 κ receptor 6B73 κ receptor 6B73
TM3 136 3.44x44 κ receptor 6B73 NTS1 receptor 5T04
TM3 137 3.45x45 κ receptor 6B73 β2-adrenoceptor 3SN6
TM3 138 3.46x46 κ receptor 6B73 κ receptor 6B73
TM3 139 3.47x47 κ receptor 6B73 κ receptor 6B73
TM3 140 3.48x48 κ receptor 6B73 κ receptor 6B73
TM3 141 3.49x49 κ receptor 6B73 κ receptor 6B73
TM3 142 3.50x50 κ receptor 6B73 κ receptor 6B73
TM3 143 3.51x51 κ receptor 6B73 κ receptor 6B73
TM3 144 3.52x52 κ receptor 6B73 LPA6 receptor 5XSZ
TM3 145 3.53x53 κ receptor 6B73 Rhodopsin 5DYS
TM3 146 3.54x54 κ receptor 6B73 κ receptor 6B73
TM3 147 3.55x55 κ receptor 6B73 - -
TM3 148 3.56x56 κ receptor 6B73 - -
ICL2 149 - - - -
ICL2 150 - - - -
ICL2 151 - - - -
ICL2 152 - - - -
ICL2 153 - - - -
ICL2 154 - - - -
ICL2 155 - - - -
ICL2 156 - - - -
ICL2 157 - - - -
ICL2 158 - - - -
TM4 159 4.38x38 κ receptor 6B73 κ receptor 6B73
TM4 160 4.39x39 κ receptor 6B73 - -
TM4 161 4.40x40 κ receptor 6B73 μ receptor 5C1M
TM4 162 4.41x41 κ receptor 6B73 P2Y12 receptor 4NTJ
TM4 163 4.42x42 κ receptor 6B73 κ receptor 6B73
TM4 164 4.43x43 κ receptor 6B73 κ receptor 6B73
TM4 165 4.44x44 κ receptor 6B73 β2-adrenoceptor 3SN6
TM4 166 4.45x45 κ receptor 6B73 CB1 receptor 5XRA
TM4 167 4.46x46 κ receptor 6B73 US28 4XT1
TM4 168 4.47x47 κ receptor 6B73 β2-adrenoceptor 3SN6
TM4 169 4.48x48 κ receptor 6B73 κ receptor 6B73
TM4 170 4.49x49 κ receptor 6B73 LPA6 receptor 5XSZ
TM4 171 4.50x50 κ receptor 6B73 κ receptor 6B73
TM4 172 4.51x51 κ receptor 6B73 κ receptor 6B73
TM4 173 4.52x52 κ receptor 6B73 - -
TM4 174 4.53x53 κ receptor 6B73 LPA6 receptor 5XSZ
TM4 175 4.54x54 κ receptor 6B73 - -
TM4 176 4.55x55 κ receptor 6B73 CB1 receptor 5XRA
TM4 177 4.56x56 κ receptor 6B73 M2 receptor 4MQT
TM4 178 4.57x57 AT1 receptor 4ZUD PAR1 3VW7
TM4 179 4.58x59 AT1 receptor 4ZUD β2-adrenoceptor 3SN6
TM4 180 4.59x60 κ receptor 6B73 US28 4XT1
TM4 181 4.60x61 κ receptor 6B73 Y1 receptor 5ZBH
TM4 182 4.61x62 κ receptor 6B73 μ receptor 5C1M
TM4 183 4.62x63 κ receptor 6B73 - -
TM4 184 4.63x64 κ receptor 6B73 - -
TM4 185 4.64x65 AT1 receptor 4ZUD CXCR4 3ODU
ECL2 186 κ receptor 6B73 κ receptor 6B73
ECL2 187 κ receptor 6B73 - -
ECL2 188 κ receptor 6B73 - -
ECL2 189 κ receptor 6B73 - -
ECL2 190 κ receptor 6B73 - -
ECL2 191 - - - -
ECL2 192 - - - -
ECL2 193 - - - -
ECL2 194 κ receptor 6B73 - -
ECL2 195 κ receptor 6B73 - -
ECL2 196 κ receptor 6B73 - -
ECL2 197 45.50x50 κ receptor 6B73 κ receptor 6B73
ECL2 198 45.51x51 κ receptor 6B73 Rhodopsin 5DYS
ECL2 199 45.52x52 κ receptor 6B73 κ receptor 6B73
ECL2 200 κ receptor 4DJH κ receptor 4DJH
ECL2 201 - - - -
ECL2 202 κ receptor 4DJH κ receptor 4DJH
ECL2 203 κ receptor 4DJH κ receptor 4DJH
ECL2 204 κ receptor 4DJH - -
TM5 205 5.31x32 δ receptor 4N6H apelin receptor 5VBL
TM5 206 5.32x33 δ receptor 4N6H CCR5 5UIW
TM5 207 5.33x34 κ receptor 6B73 P2Y12 receptor 4NTJ
TM5 208 5.34x35 κ receptor 6B73 κ receptor 6B73
TM5 209 5.35x36 κ receptor 6B73 5-HT2B receptor 5TUD
TM5 210 5.36x37 κ receptor 6B73 NTS1 receptor 5T04
TM5 211 5.37x38 κ receptor 6B73 β2-adrenoceptor 3SN6
TM5 212 5.38x39 κ receptor 6B73 - -
TM5 213 5.39x40 κ receptor 6B73 FFA1 receptor 5TZY
TM5 214 5.40x41 κ receptor 6B73 US28 4XT1
TM5 215 5.41x42 κ receptor 6B73 Rhodopsin 5DYS
TM5 216 5.42x43 κ receptor 6B73 M2 receptor 4MQT
TM5 217 5.43x44 κ receptor 6B73 Y1 receptor 5ZBH
TM5 218 5.44x45 κ receptor 6B73 5-HT1B receptor 6G79
TM5 219 5.45x46 κ receptor 6B73 AT2 receptor 5UNG
TM5 220 5.46x461 κ receptor 6B73 LPA6 receptor 5XSZ
TM5 221 5.47x47 κ receptor 6B73 κ receptor 6B73
TM5 222 5.48x48 κ receptor 6B73 κ receptor 6B73
TM5 223 5.49x49 κ receptor 6B73 M2 receptor 4MQT
TM5 224 5.50x50 κ receptor 6B73 κ receptor 6B73
TM5 225 5.51x51 κ receptor 6B73 κ receptor 6B73
TM5 226 5.52x52 κ receptor 6B73 OX2 receptor 5WS3
TM5 227 5.53x53 κ receptor 6B73 C5a1 receptor 5O9H
TM5 228 5.54x54 κ receptor 6B73 κ receptor 6B73
TM5 229 5.55x55 κ receptor 6B73 M1 receptor 5CXV
TM5 230 5.56x56 κ receptor 6B73 κ receptor 6B73
TM5 231 5.57x57 κ receptor 6B73 M2 receptor 4MQT
TM5 232 5.58x58 κ receptor 6B73 κ receptor 6B73
TM5 233 5.59x59 κ receptor 6B73 κ receptor 6B73
TM5 234 5.60x60 κ receptor 6B73 BLT1 receptor 5X33
TM5 235 5.61x61 κ receptor 6B73 Rhodopsin 5DYS
TM5 236 5.62x62 κ receptor 6B73 LPA6 receptor 5XSZ
TM5 237 5.63x63 κ receptor 6B73 US28 4XT1
TM5 238 5.64x64 κ receptor 6B73 κ receptor 6B73
TM5 239 5.65x65 κ receptor 6B73 κ receptor 6B73
TM5 240 5.66x66 κ receptor 6B73 5-HT1B receptor 6G79
TM5 241 5.67x67 κ receptor 6B73 - -
TM5 242 5.68x68 δ receptor 4N6H δ receptor 4N6H
ICL3 243 κ receptor 6B73 - -
ICL3 244 - - - -
ICL3 245 - - - -
ICL3 246 - - - -
ICL3 247 - - - -
TM6 248 6.23x23 κ receptor 6B73 A2A receptor 4UHR
TM6 249 6.24x24 κ receptor 6B73 μ receptor 6DDF
TM6 250 6.25x25 κ receptor 6B73 - -
TM6 251 6.26x26 κ receptor 6B73 FFA1 receptor 5TZR
TM6 252 6.27x27 κ receptor 6B73 CXCR4 3ODU
TM6 253 6.28x28 κ receptor 6B73 Rhodopsin 5DYS
TM6 254 6.29x29 κ receptor 6B73 NTS1 receptor 5T04
TM6 255 6.30x30 κ receptor 6B73 AT2 receptor 5UNG
TM6 256 6.31x31 κ receptor 6B73 μ receptor 5C1M
TM6 257 6.32x32 κ receptor 6B73 LPA6 receptor 5XSZ
TM6 258 6.33x33 κ receptor 6B73 AT2 receptor 5UNG
TM6 259 6.34x34 κ receptor 6B73 κ receptor 6B73
TM6 260 6.35x35 κ receptor 6B73 - -
TM6 261 6.36x36 κ receptor 6B73 κ receptor 6B73
TM6 262 6.37x37 κ receptor 6B73 κ receptor 6B73
TM6 263 6.38x38 κ receptor 6B73 κ receptor 6B73
TM6 264 6.39x39 κ receptor 6B73 κ receptor 6B73
TM6 265 6.40x40 κ receptor 6B73 κ receptor 6B73
TM6 266 6.41x41 κ receptor 6B73 LPA6 receptor 5XSZ
TM6 267 6.42x42 κ receptor 6B73 κ receptor 6B73
TM6 268 6.43x43 κ receptor 6B73 κ receptor 6B73
TM6 269 6.44x44 κ receptor 6B73 - -
TM6 270 6.45x45 κ receptor 6B73 5-HT2B receptor 5TUD
TM6 271 6.46x46 κ receptor 6B73 β2-adrenoceptor 3SN6
TM6 272 6.47x47 κ receptor 6B73 κ receptor 6B73
TM6 273 6.48x48 κ receptor 6B73 κ receptor 6B73
TM6 274 6.49x49 κ receptor 6B73 κ receptor 6B73
TM6 275 6.50x50 κ receptor 6B73 κ receptor 6B73
TM6 276 6.51x51 κ receptor 6B73 β2-adrenoceptor 3SN6
TM6 277 6.52x52 κ receptor 6B73 κ receptor 6B73
TM6 278 6.53x53 κ receptor 6B73 US28 4XT1
TM6 279 6.54x54 κ receptor 6B73 ETB receptor 5X93
TM6 280 6.55x55 κ receptor 6B73 5-HT1B receptor 6G79
TM6 281 6.56x56 κ receptor 6B73 LPA6 receptor 5XSZ
TM6 282 6.57x57 κ receptor 6B73 κ receptor 6B73
TM6 283 6.58x58 κ receptor 6B73 - -
TM6 284 6.59x59 κ receptor 6B73 A1 receptor 6D9H
TM6 285 6.60x60 κ receptor 6B73 Rhodopsin 5DYS
TM6 286 6.61x61 κ receptor 6B73 - -
ECL3 287 - - - -
ECL3 288 κ receptor 6B73 - -
ECL3 289 κ receptor 6B73 - -
ECL3 290 κ receptor 6B73 - -
TM7 291 7.28x27 κ receptor 6B73 μ receptor 5C1M
TM7 292 7.29x28 κ receptor 6B73 δ receptor 4N6H
TM7 293 7.30x29 κ receptor 6B73 5-HT2C receptor 6BQG
TM7 294 7.31x30 κ receptor 6B73 LPA6 receptor 5XSZ
TM7 295 7.32x31 κ receptor 6B73 - -
TM7 296 7.33x32 κ receptor 6B73 κ receptor 6B73
TM7 297 7.34x33 κ receptor 6B73 - -
TM7 298 7.35x34 κ receptor 6B73 FFA1 receptor 5KW2
TM7 299 7.36x35 κ receptor 6B73 κ receptor 6B73
TM7 300 7.37x36 κ receptor 6B73 5-HT2C receptor 6BQG
TM7 301 7.38x37 κ receptor 6B73 - -
TM7 302 7.39x38 κ receptor 6B73 5-HT1B receptor 6G79
TM7 303 7.40x39 κ receptor 6B73 US28 4XT1
TM7 304 7.41x40 κ receptor 6B73 κ receptor 6B73
TM7 305 7.42x41 κ receptor 6B73 A2A receptor 5G53
TM7 306 7.43x42 κ receptor 6B73 κ receptor 6B73
TM7 307 7.44x43 κ receptor 6B73 NTS1 receptor 5T04
TM7 308 7.45x45 κ receptor 6B73 κ receptor 6B73
TM7 309 7.46x46 κ receptor 6B73 κ receptor 6B73
TM7 310 7.47x47 κ receptor 6B73 μ receptor 5C1M
TM7 311 7.48x48 κ receptor 6B73 κ receptor 6B73
TM7 312 7.49x49 κ receptor 6B73 κ receptor 6B73
TM7 313 7.50x50 κ receptor 6B73 κ receptor 6B73
TM7 314 7.51x51 κ receptor 6B73 AT2 receptor 5UNG
TM7 315 7.52x52 δ receptor 4N6H δ receptor 4N6H
TM7 316 7.53x53 δ receptor 4N6H δ receptor 4N6H
TM7 317 7.54x54 δ receptor 4N6H δ receptor 4N6H
TM7 318 7.55x55 δ receptor 4N6H δ receptor 4N6H
TM7 319 7.56x56 δ receptor 4N6H δ receptor 4N6H
H8 320 8.47x47 δ receptor 4N6H δ receptor 4N6H
H8 321 8.48x48 δ receptor 4N6H - -
H8 322 8.49x49 δ receptor 4N6H δ receptor 4N6H
H8 323 8.50x50 δ receptor 4N6H δ receptor 4N6H
H8 324 8.51x51 δ receptor 4N6H US28 4XT1
H8 325 8.52x52 δ receptor 4N6H δ receptor 4N6H
H8 326 8.53x53 δ receptor 4N6H - -
H8 327 8.54x54 δ receptor 4N6H β2-adrenoceptor 3SN6
H8 328 8.55x55 δ receptor 4N6H CB1 receptor 5XRA
H8 329 8.56x56 δ receptor 4N6H AT2 receptor 5UNG
H8 330 8.57x57 δ receptor 4N6H A2A receptor 5G53
H8 331 8.58x58 δ receptor 4N6H US28 4XT1
H8 332 8.59x59 δ receptor 4N6H 5-HT2C receptor 6BQG
H8 333 8.60x60 δ receptor 4N6H 5-HT2C receptor 6BQG