Ggust - 5-HT2A receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 73.9

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.5
PAE mean: 16.6


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic ICL2 I 181 34x51 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 I 181 34x51 G.hns1 A 31 G.hns1.02
Polar ICL2 R 185 34x55 G.h2s4 T 219 G.h2s4.05
Polar TM3 N 179 3x56 G.hns1 R 32 G.hns1.03
Hydrophobic TM3 N 179 3x56 G.hns1 R 32 G.hns1.03
Van-der-waals TM3 N 179 3x56 G.hns1 R 32 G.hns1.03
Polar ICL2 H 182 34x52 G.hns1 R 32 G.hns1.03
Aromatic ICL2 H 182 34x52 G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 H 182 34x52 G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 H 182 34x52 G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 P 180 34x50 G.H5 N 347 G.H5.19
Polar ICL2 H 183 34x53 G.H5 C 351 G.H5.23
Hydrophobic ICL2 H 183 34x53 G.H5 C 351 G.H5.23
Van-der-waals ICL2 H 183 34x53 G.H5 C 351 G.H5.23
Hydrophobic ICL2 I 181 34x51 G.S3 L 194 G.S3.01
Van-der-waals ICL2 I 181 34x51 G.S3 L 194 G.S3.01
Hydrophobic ICL3 Y 306 - G.H5 F 334 G.H5.06
Van-der-waals ICL3 Y 306 - G.H5 F 334 G.H5.06
Polar TM3 R 173 3x50 G.H5 G 352 G.H5.24
Van-der-waals TM3 R 173 3x50 G.H5 G 352 G.H5.24
Hydrophobic ICL2 F 186 34x56 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 F 186 34x56 G.hns1 A 31 G.hns1.02
Hydrophobic TM6 N 317 6x29 G.H5 F 354 G.H5.26
Van-der-waals TM6 N 317 6x29 G.H5 F 354 G.H5.26
Hydrophobic ICL2 I 181 34x51 G.hns1 R 32 G.hns1.03
Hydrophobic ICL3 T 307 - G.H5 F 334 G.H5.06
Van-der-waals ICL3 T 307 - G.H5 F 334 G.H5.06
Hydrophobic C-term I 414 - G.H3 S 252 G.H3.11
Van-der-waals C-term I 414 - G.H3 S 252 G.H3.11
Hydrophobic ICL2 I 181 34x51 G.S1 T 33 G.S1.01
Van-der-waals ICL2 I 181 34x51 G.S1 T 33 G.S1.01
Hydrophobic ICL2 F 186 34x56 G.HN E 28 G.HN.52
Van-der-waals ICL2 F 186 34x56 G.HN E 28 G.HN.52
Hydrophobic ICL2 I 181 34x51 G.H5 I 343 G.H5.15
Van-der-waals ICL2 I 181 34x51 G.H5 I 343 G.H5.15
Ionic H8 K 385 8x48 G.h4s6 E 315 G.h4s6.09
Polar H8 K 385 8x48 G.h4s6 E 315 G.h4s6.09
Van-der-waals H8 K 385 8x48 G.h4s6 E 315 G.h4s6.09
Polar TM6 A 321 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM6 A 321 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM3 R 173 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 R 173 3x50 G.H5 L 353 G.H5.25
Polar TM2 T 109 2x39 G.H5 D 350 G.H5.22
Van-der-waals TM2 T 109 2x39 G.H5 D 350 G.H5.22
Hydrophobic ICL2 I 181 34x51 G.S1 V 34 G.S1.02
Van-der-waals ICL2 I 181 34x51 G.S1 V 34 G.S1.02
Polar ICL3 R 310 - G.H5 A 338 G.H5.10
Hydrophobic ICL3 R 310 - G.H5 A 338 G.H5.10
Van-der-waals ICL3 R 310 - G.H5 A 338 G.H5.10
Hydrophobic TM3 I 177 3x54 G.H5 L 348 G.H5.20
Hydrophobic TM6 N 317 6x29 G.H5 K 345 G.H5.17
Van-der-waals TM6 N 317 6x29 G.H5 K 345 G.H5.17
Polar ICL2 H 182 34x52 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 H 182 34x52 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 H 182 34x52 G.hns1 A 31 G.hns1.02
Hydrophobic TM2 T 109 2x39 G.H5 C 351 G.H5.23
Hydrophobic TM3 A 176 3x53 G.H5 C 351 G.H5.23
Van-der-waals TM3 A 176 3x53 G.H5 C 351 G.H5.23
Van-der-waals ICL2 R 185 34x55 G.S1 K 35 G.S1.03
Polar H8 N 384 8x47 G.H5 F 354 G.H5.26
Hydrophobic C-term L 417 - G.H2 K 209 G.H2.05
Ionic ICL1 K 104 12x49 G.h4s6 D 316 G.h4s6.10
Polar ICL1 K 104 12x49 G.h4s6 D 316 G.h4s6.10
Hydrophobic ICL1 K 104 12x49 G.h4s6 D 316 G.h4s6.10
Van-der-waals ICL1 K 104 12x49 G.h4s6 D 316 G.h4s6.10
Polar C-term I 409 - G.H3 N 251 G.H3.10
Hydrophobic C-term I 409 - G.H3 N 251 G.H3.10
Van-der-waals C-term I 409 - G.H3 N 251 G.H3.10
Polar ICL3 R 310 - G.S6 H 322 G.S6.04
Aromatic ICL3 R 310 - G.S6 H 322 G.S6.04
Hydrophobic ICL3 R 310 - G.S6 H 322 G.S6.04
Van-der-waals ICL3 R 310 - G.S6 H 322 G.S6.04
Polar ICL3 R 310 - G.H5 V 335 G.H5.07
Hydrophobic TM7 F 383 7x56 G.H5 F 354 G.H5.26
Polar ICL3 R 310 - G.H5 F 334 G.H5.06
Hydrophobic ICL3 R 310 - G.H5 F 334 G.H5.06
Polar ICL2 R 185 34x55 G.S1 T 33 G.S1.01
Hydrophobic ICL2 R 185 34x55 G.S1 T 33 G.S1.01
Van-der-waals ICL2 R 185 34x55 G.S1 T 33 G.S1.01
Hydrophobic TM3 A 176 3x53 G.H5 L 353 G.H5.25
Hydrophobic ICL2 P 180 34x50 G.H5 L 348 G.H5.20
Hydrophobic ICL2 I 181 34x51 G.H5 N 347 G.H5.19
Hydrophobic ICL2 R 185 34x55 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 R 185 34x55 G.hns1 A 31 G.hns1.02
Hydrophobic TM3 I 177 3x54 G.H5 L 353 G.H5.25
Polar ICL2 H 182 34x52 G.HN E 28 G.HN.52
Hydrophobic ICL2 H 182 34x52 G.HN E 28 G.HN.52
Van-der-waals ICL2 H 182 34x52 G.HN E 28 G.HN.52
Polar C-term T 413 - G.H3 H 248 G.H3.07
Hydrophobic C-term T 413 - G.H3 H 248 G.H3.07
Van-der-waals C-term T 413 - G.H3 H 248 G.H3.07
Ionic ICL2 R 185 34x55 G.hns1 D 30 G.hns1.01
Polar ICL2 R 185 34x55 G.hns1 D 30 G.hns1.01
Hydrophobic ICL2 R 185 34x55 G.hns1 D 30 G.hns1.01
Van-der-waals ICL2 R 185 34x55 G.hns1 D 30 G.hns1.01
Polar TM2 N 107 2x37 G.H5 D 350 G.H5.22
Van-der-waals TM2 N 107 2x37 G.H5 D 350 G.H5.22
Hydrophobic TM3 A 176 3x53 G.H5 L 348 G.H5.20
Van-der-waals TM3 A 176 3x53 G.H5 L 348 G.H5.20
Hydrophobic ICL2 P 180 34x50 G.H5 I 344 G.H5.16
Van-der-waals ICL3 R 310 - G.H5 I 342 G.H5.14
Polar ICL2 S 184 34x54 G.H5 N 347 G.H5.19
Hydrophobic ICL2 S 184 34x54 G.H5 N 347 G.H5.19
Van-der-waals ICL2 S 184 34x54 G.H5 N 347 G.H5.19
Hydrophobic TM6 S 314 6x26 G.H5 D 341 G.H5.13
Hydrophobic ICL2 F 186 34x56 G.HN A 27 G.HN.51
Van-der-waals ICL2 F 186 34x56 G.HN A 27 G.HN.51
Hydrophobic TM6 K 320 6x32 G.H5 F 354 G.H5.26
Van-der-waals TM6 K 320 6x32 G.H5 F 354 G.H5.26
Polar TM3 R 173 3x50 G.H5 C 351 G.H5.23
Hydrophobic C-term I 409 - G.h4s6 L 312 G.h4s6.03
Van-der-waals C-term I 409 - G.h4s6 L 312 G.h4s6.03