Go - B2 receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 86.5

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.8
PAE mean: 11.9


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic ICL2 T 162 34x50 G.H5 I 344 G.H5.16
Hydrophobic ICL2 M 163 34x51 G.H5 V 339 G.H5.11
Polar ICL2 R 167 34x55 G.S1 D 33 G.S1.01
Van-der-waals ICL2 R 167 34x55 G.S1 D 33 G.S1.01
Polar TM3 R 155 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 155 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM5 M 256 5x70 G.H5 A 338 G.H5.10
Hydrophobic TM6 R 267 6x32 G.H5 Y 354 G.H5.26
Van-der-waals TM6 R 267 6x32 G.H5 Y 354 G.H5.26
Hydrophobic ICL2 T 162 34x50 G.H5 I 343 G.H5.15
Van-der-waals ICL2 T 162 34x50 G.H5 I 343 G.H5.15
Hydrophobic TM5 M 256 5x70 G.S6 Y 320 G.S6.02
Hydrophobic TM6 E 265 6x30 G.H5 L 348 G.H5.20
Hydrophobic TM3 L 159 3x54 G.H5 N 347 G.H5.19
Hydrophobic C-term N 365 - G.H3 K 258 G.H3.16
Van-der-waals C-term N 365 - G.H3 K 258 G.H3.16
Hydrophobic ICL3 F 259 - G.S6 C 321 G.S6.03
Van-der-waals ICL3 F 259 - G.S6 C 321 G.S6.03
Hydrophobic TM5 L 251 5x65 G.H5 L 348 G.H5.20
Hydrophobic TM3 R 155 3x50 G.H5 L 353 G.H5.25
Polar ICL3 E 261 - G.h4s6 E 318 G.h4s6.12
Hydrophobic TM3 L 159 3x54 G.H5 I 344 G.H5.16
Hydrophobic TM3 L 159 3x54 G.H5 L 353 G.H5.25
Hydrophobic TM6 A 268 6x33 G.H5 L 348 G.H5.20
Polar H8 R 338 8x49 G.H5 R 349 G.H5.21
Hydrophobic H8 R 338 8x49 G.H5 R 349 G.H5.21
Polar TM5 N 254 5x68 G.H5 D 341 G.H5.13
Hydrophobic TM5 N 254 5x68 G.H5 D 341 G.H5.13
Van-der-waals TM5 N 254 5x68 G.H5 D 341 G.H5.13
Hydrophobic TM6 V 272 6x37 G.H5 L 353 G.H5.25
Polar ICL2 R 167 34x55 G.hns1 A 31 G.hns1.02
Hydrophobic ICL2 R 167 34x55 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 R 167 34x55 G.hns1 A 31 G.hns1.02
Hydrophobic H8 R 338 8x49 G.H5 G 350 G.H5.22
Van-der-waals H8 R 338 8x49 G.H5 G 350 G.H5.22
Polar TM3 A 158 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 A 158 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 A 158 3x53 G.H5 N 347 G.H5.19
Hydrophobic C-term T 369 - G.H2 K 210 G.H2.05
Hydrophobic ICL2 M 163 34x51 G.S3 L 195 G.S3.01
Van-der-waals ICL2 M 163 34x51 G.S3 L 195 G.S3.01
Hydrophobic TM6 I 262 6x27 G.h4s6 P 315 G.h4s6.09
Hydrophobic TM3 L 159 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 L 159 3x54 G.H5 L 348 G.H5.20
Hydrophobic TM6 A 268 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM6 L 271 6x36 G.H5 L 353 G.H5.25
Hydrophobic ICL3 K 260 - G.h4s6 E 318 G.h4s6.12
Van-der-waals ICL3 K 260 - G.h4s6 E 318 G.h4s6.12
Hydrophobic TM3 A 158 3x53 G.H5 C 351 G.H5.23
Polar H8 K 337 8x48 G.H5 Y 354 G.H5.26
Hydrophobic H8 K 337 8x48 G.H5 Y 354 G.H5.26
Van-der-waals H8 K 337 8x48 G.H5 Y 354 G.H5.26
Hydrophobic TM2 A 92 2x39 G.H5 C 351 G.H5.23
Hydrophobic TM5 M 256 5x70 G.H5 D 341 G.H5.13
Van-der-waals TM5 M 256 5x70 G.H5 D 341 G.H5.13
Hydrophobic ICL2 M 163 34x51 G.H5 T 340 G.H5.12
Van-der-waals ICL2 M 163 34x51 G.H5 T 340 G.H5.12
Polar ICL2 R 167 34x55 G.hns1 K 32 G.hns1.03
Hydrophobic ICL2 R 167 34x55 G.hns1 K 32 G.hns1.03
Van-der-waals ICL2 R 167 34x55 G.hns1 K 32 G.hns1.03
Polar C-term Q 379 - G.s4h3 T 241 G.s4h3.14
Van-der-waals C-term Q 379 - G.s4h3 T 241 G.s4h3.14
Hydrophobic TM5 M 256 5x70 G.H5 D 337 G.H5.09
Van-der-waals TM5 M 256 5x70 G.H5 D 337 G.H5.09
Hydrophobic ICL2 M 163 34x51 G.H5 I 343 G.H5.15
Hydrophobic ICL3 F 259 - G.S6 Y 320 G.S6.02
Ionic ICL3 K 260 - G.H5 D 341 G.H5.13
Polar ICL3 K 260 - G.H5 D 341 G.H5.13
Hydrophobic ICL3 K 260 - G.H5 D 341 G.H5.13
Van-der-waals ICL3 K 260 - G.H5 D 341 G.H5.13
Polar H8 G 336 8x47 G.H5 G 352 G.H5.24
Hydrophobic H8 G 336 8x47 G.H5 G 352 G.H5.24
Van-der-waals H8 G 336 8x47 G.H5 G 352 G.H5.24
Hydrophobic TM6 T 264 6x29 G.H5 Y 354 G.H5.26
Van-der-waals TM6 T 264 6x29 G.H5 Y 354 G.H5.26