G12 - GAL1 receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

G12/13

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 80.2

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.6
PAE mean: 17.3


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar ICL2 S 145 34x55 G.hns1 R 56 G.hns1.03
Hydrophobic ICL2 S 145 34x55 G.hns1 R 56 G.hns1.03
Van-der-waals ICL2 S 145 34x55 G.hns1 R 56 G.hns1.03
Hydrophobic H8 E 308 8x48 G.H5 Q 381 G.H5.26
Hydrophobic ICL2 S 145 34x55 G.hns1 R 55 G.hns1.02
Polar ICL2 S 143 34x53 G.H5 N 374 G.H5.19
Van-der-waals ICL2 S 143 34x53 G.H5 N 374 G.H5.19
Hydrophobic TM2 T 70 2x39 G.H5 L 380 G.H5.25
Hydrophobic TM3 I 137 3x54 G.H5 L 375 G.H5.20
Van-der-waals TM3 I 137 3x54 G.H5 L 375 G.H5.20
Hydrophobic TM2 I 74 2x43 G.H5 L 380 G.H5.25
Van-der-waals TM2 I 74 2x43 G.H5 L 380 G.H5.25
Hydrophobic TM3 I 137 3x54 G.H5 L 371 G.H5.16
Van-der-waals TM3 I 137 3x54 G.H5 L 371 G.H5.16
Hydrophobic TM6 K 242 6x30 G.H5 L 375 G.H5.20
Polar ICL2 R 141 34x51 G.H5 F 363 G.H5.08
Hydrophobic ICL2 R 141 34x51 G.H5 F 363 G.H5.08
Van-der-waals ICL2 R 141 34x51 G.H5 F 363 G.H5.08
Hydrophobic TM3 I 137 3x54 G.H5 I 378 G.H5.23
Van-der-waals TM3 I 137 3x54 G.H5 I 378 G.H5.23
Hydrophobic TM2 N 71 2x40 G.H5 L 380 G.H5.25
Van-der-waals TM2 N 71 2x40 G.H5 L 380 G.H5.25
Polar TM3 A 136 3x53 G.H5 N 374 G.H5.19
Hydrophobic TM3 A 136 3x53 G.H5 N 374 G.H5.19
Van-der-waals TM3 A 136 3x53 G.H5 N 374 G.H5.19
Hydrophobic TM6 S 238 6x26 G.H5 Q 372 G.H5.17
Van-der-waals TM6 S 238 6x26 G.H5 Q 372 G.H5.17
Polar H8 S 307 8x47 G.H5 M 379 G.H5.24
Hydrophobic H8 S 307 8x47 G.H5 M 379 G.H5.24
Van-der-waals H8 S 307 8x47 G.H5 M 379 G.H5.24
Polar TM2 T 70 2x39 G.H5 D 377 G.H5.22
Hydrophobic TM2 T 70 2x39 G.H5 D 377 G.H5.22
Polar H8 S 307 8x47 G.H5 L 380 G.H5.25
Hydrophobic H8 S 307 8x47 G.H5 L 380 G.H5.25
Van-der-waals H8 S 307 8x47 G.H5 L 380 G.H5.25
Hydrophobic TM5 K 230 5x68 G.H5 K 367 G.H5.12
Van-der-waals TM5 K 230 5x68 G.H5 K 367 G.H5.12
Hydrophobic ICL3 M 234 - G.H5 L 371 G.H5.16
Polar H8 F 310 8x50 G.H5 L 380 G.H5.25
Hydrophobic TM3 A 136 3x53 G.H5 I 378 G.H5.23
Van-der-waals TM3 A 136 3x53 G.H5 I 378 G.H5.23
Polar TM6 S 241 6x29 G.H5 Q 381 G.H5.26
Hydrophobic ICL2 R 141 34x51 G.H5 K 367 G.H5.12
Hydrophobic TM6 T 245 6x33 G.H5 L 375 G.H5.20
Van-der-waals H8 K 312 8x52 G.H5 Q 381 G.H5.26
Polar TM3 R 133 3x50 G.H5 I 378 G.H5.23
Hydrophobic TM3 R 133 3x50 G.H5 I 378 G.H5.23
Van-der-waals TM3 R 133 3x50 G.H5 I 378 G.H5.23
Hydrophobic TM6 T 248 6x36 G.H5 M 379 G.H5.24
Van-der-waals TM6 T 248 6x36 G.H5 M 379 G.H5.24
Hydrophobic ICL3 M 234 - G.H5 Q 372 G.H5.17
Polar ICL2 S 144 34x54 G.hns1 R 55 G.hns1.02
Hydrophobic ICL2 S 144 34x54 G.hns1 R 55 G.hns1.02
Van-der-waals ICL2 S 144 34x54 G.hns1 R 55 G.hns1.02
Hydrophobic TM5 L 227 5x65 G.H5 L 375 G.H5.20
Polar ICL2 S 140 34x50 G.H5 N 374 G.H5.19
Van-der-waals ICL2 S 140 34x50 G.H5 N 374 G.H5.19
Hydrophobic ICL2 S 140 34x50 G.H5 L 371 G.H5.16
Hydrophobic TM4 V 148 4x38 G.hns1 R 55 G.hns1.02
Van-der-waals TM4 V 148 4x38 G.hns1 R 55 G.hns1.02
Polar TM2 S 68 2x37 G.H5 D 377 G.H5.22
Hydrophobic TM2 S 68 2x37 G.H5 D 377 G.H5.22
Van-der-waals TM2 S 68 2x37 G.H5 D 377 G.H5.22
Hydrophobic TM6 S 235 6x23 G.h4s6 P 345 G.h4s6.20
Van-der-waals TM6 S 235 6x23 G.h4s6 P 345 G.h4s6.20
Hydrophobic TM5 L 231 5x69 G.H5 L 371 G.H5.16
Van-der-waals TM5 L 231 5x69 G.H5 L 371 G.H5.16
Ionic ICL2 R 147 34x57 G.H5 D 377 G.H5.22
Polar ICL2 R 147 34x57 G.H5 D 377 G.H5.22
Hydrophobic ICL2 R 147 34x57 G.H5 D 377 G.H5.22
Van-der-waals ICL2 R 147 34x57 G.H5 D 377 G.H5.22
Polar TM6 K 237 6x25 G.h4s6 S 343 G.h4s6.12
Hydrophobic TM6 K 237 6x25 G.h4s6 S 343 G.h4s6.12
Van-der-waals TM6 K 237 6x25 G.h4s6 S 343 G.h4s6.12
Hydrophobic ICL2 S 140 34x50 G.H5 I 370 G.H5.15
Van-der-waals ICL2 S 140 34x50 G.H5 I 370 G.H5.15
Hydrophobic ICL2 R 141 34x51 G.S3 I 221 G.S3.01
Van-der-waals ICL2 R 141 34x51 G.S3 I 221 G.S3.01
Hydrophobic ICL3 M 234 - G.H5 D 368 G.H5.13
Van-der-waals ICL3 M 234 - G.H5 D 368 G.H5.13
Hydrophobic TM6 K 244 6x32 G.H5 M 379 G.H5.24
Hydrophobic TM6 T 245 6x33 G.H5 M 379 G.H5.24
Van-der-waals TM6 T 245 6x33 G.H5 M 379 G.H5.24
Polar H8 E 308 8x48 G.H5 L 380 G.H5.25
Van-der-waals H8 E 308 8x48 G.H5 L 380 G.H5.25
Polar H8 N 309 8x49 G.H5 L 380 G.H5.25
Hydrophobic H8 N 309 8x49 G.H5 L 380 G.H5.25
Van-der-waals H8 N 309 8x49 G.H5 L 380 G.H5.25
Polar H8 N 309 8x49 G.H5 Q 381 G.H5.26
Hydrophobic H8 N 309 8x49 G.H5 Q 381 G.H5.26
Van-der-waals H8 N 309 8x49 G.H5 Q 381 G.H5.26
Hydrophobic TM5 L 231 5x69 G.H5 D 368 G.H5.13
Van-der-waals TM5 L 231 5x69 G.H5 D 368 G.H5.13
Hydrophobic TM2 T 70 2x39 G.H5 I 378 G.H5.23