Gq - GPR55 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gq/11

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 84.9

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.8
PAE mean: 12.5


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar H8 S 305 8x60 G.h4s6 S 320 G.h4s6.11
Hydrophobic H8 S 305 8x60 G.h4s6 S 320 G.h4s6.11
Van-der-waals H8 S 305 8x60 G.h4s6 S 320 G.h4s6.11
Polar TM6 C 224 6x33 G.H5 L 358 G.H5.25
Hydrophobic TM6 C 224 6x33 G.H5 L 358 G.H5.25
Van-der-waals TM6 C 224 6x33 G.H5 L 358 G.H5.25
Ionic ICL2 R 133 34x57 G.H5 E 355 G.H5.22
Polar ICL2 R 133 34x57 G.H5 E 355 G.H5.22
Hydrophobic ICL2 R 133 34x57 G.H5 E 355 G.H5.22
Van-der-waals ICL2 R 133 34x57 G.H5 E 355 G.H5.22
Polar H8 R 303 8x58 G.h4s6 D 321 G.h4s6.12
Van-der-waals H8 R 303 8x58 G.h4s6 D 321 G.h4s6.12
Hydrophobic TM2 T 59 2x39 G.H5 N 357 G.H5.24
Hydrophobic TM6 S 227 6x36 G.H5 L 358 G.H5.25
Hydrophobic TM6 I 228 6x37 G.H5 L 358 G.H5.25
Polar H8 P 304 8x59 G.h4s6 S 320 G.h4s6.11
Hydrophobic H8 P 304 8x59 G.h4s6 S 320 G.h4s6.11
Van-der-waals H8 P 304 8x59 G.h4s6 S 320 G.h4s6.11
Hydrophobic ICL1 Y 56 - G.H5 K 354 G.H5.21
Hydrophobic ICL2 P 126 34x50 G.H5 L 349 G.H5.16
Hydrophobic H8 I 292 8x47 G.H5 N 357 G.H5.24
Van-der-waals H8 I 292 8x47 G.H5 N 357 G.H5.24
Polar H8 S 305 8x60 G.h4s6 D 321 G.h4s6.12
Hydrophobic TM3 I 123 3x54 G.H5 L 353 G.H5.20
Polar H8 K 293 8x48 G.H5 V 359 G.H5.26
Hydrophobic H8 K 293 8x48 G.H5 V 359 G.H5.26
Van-der-waals H8 K 293 8x48 G.H5 V 359 G.H5.26
Hydrophobic TM7 V 291 7x56 G.H5 N 357 G.H5.24
Van-der-waals TM7 V 291 7x56 G.H5 N 357 G.H5.24
Hydrophobic TM6 C 224 6x33 G.H5 V 359 G.H5.26
Polar H8 R 303 8x58 G.h4s6 S 320 G.h4s6.11
Hydrophobic H8 R 303 8x58 G.h4s6 S 320 G.h4s6.11
Van-der-waals H8 R 303 8x58 G.h4s6 S 320 G.h4s6.11
Polar TM2 T 59 2x39 G.H5 E 355 G.H5.22
Van-der-waals TM2 T 59 2x39 G.H5 E 355 G.H5.22
Hydrophobic TM6 T 215 6x24 G.H5 D 346 G.H5.13
Hydrophobic C-term L 309 - G.H5 A 342 G.H5.09
Hydrophobic ICL2 P 126 34x50 G.H5 I 348 G.H5.15
Van-der-waals ICL2 P 126 34x50 G.H5 I 348 G.H5.15
Hydrophobic ICL2 H 131 34x55 G.S3 V 199 G.S3.01
Polar H8 H 302 8x57 G.h4s6 S 320 G.h4s6.11
Hydrophobic H8 H 302 8x57 G.h4s6 S 320 G.h4s6.11
Van-der-waals H8 H 302 8x57 G.h4s6 S 320 G.h4s6.11
Polar TM3 D 118 3x49 G.H5 Y 356 G.H5.23
Hydrophobic TM3 D 118 3x49 G.H5 Y 356 G.H5.23
Van-der-waals TM3 D 118 3x49 G.H5 Y 356 G.H5.23
Hydrophobic C-term L 311 - G.H5 F 339 G.H5.06
Hydrophobic ICL2 S 130 34x54 G.H5 I 348 G.H5.15
Hydrophobic ICL2 L 127 34x51 G.S3 V 199 G.S3.01
Hydrophobic ICL2 L 127 34x51 G.H5 K 345 G.H5.12
Hydrophobic C-term L 311 - G.S6 H 327 G.S6.04
Hydrophobic TM5 L 208 5x65 G.H5 L 353 G.H5.20
Ionic H8 K 293 8x48 G.h4s6 D 321 G.h4s6.12
Polar H8 K 293 8x48 G.h4s6 D 321 G.h4s6.12
Hydrophobic ICL2 L 127 34x51 G.H5 I 348 G.H5.15
Van-der-waals ICL2 L 127 34x51 G.H5 I 348 G.H5.15
Polar ICL2 R 133 34x57 G.H5 Y 356 G.H5.23
Hydrophobic ICL2 R 133 34x57 G.H5 Y 356 G.H5.23
Van-der-waals ICL2 R 133 34x57 G.H5 Y 356 G.H5.23
Hydrophobic TM2 T 59 2x39 G.H5 Y 356 G.H5.23
Hydrophobic ICL2 L 127 34x51 G.H5 V 344 G.H5.11
Hydrophobic C-term L 309 - G.S6 Y 325 G.S6.02
Van-der-waals C-term L 309 - G.S6 Y 325 G.S6.02
Polar ICL2 H 131 34x55 G.hns1 R 38 G.hns1.03
Hydrophobic ICL2 H 131 34x55 G.hns1 R 38 G.hns1.03
Van-der-waals ICL2 H 131 34x55 G.hns1 R 38 G.hns1.03
Ionic TM5 R 211 5x68 G.H5 D 346 G.H5.13
Polar TM5 R 211 5x68 G.H5 D 346 G.H5.13
Van-der-waals TM5 R 211 5x68 G.H5 D 346 G.H5.13
Hydrophobic C-term L 309 - G.H5 F 339 G.H5.06
Polar H8 R 306 8x61 G.H4 V 314 G.H4.16
Hydrophobic H8 R 306 8x61 G.H4 V 314 G.H4.16
Van-der-waals H8 R 306 8x61 G.H4 V 314 G.H4.16
Hydrophobic C-term L 309 - G.H5 A 343 G.H5.10
Van-der-waals C-term L 309 - G.H5 A 343 G.H5.10
Polar ICL2 H 131 34x55 G.hns1 R 37 G.hns1.02
Hydrophobic ICL2 H 131 34x55 G.hns1 R 37 G.hns1.02
Van-der-waals ICL2 H 131 34x55 G.hns1 R 37 G.hns1.02
Hydrophobic ICL2 P 126 34x50 G.H5 K 345 G.H5.12
Van-der-waals ICL2 P 126 34x50 G.H5 K 345 G.H5.12
Hydrophobic TM3 I 123 3x54 G.H5 L 349 G.H5.16
Van-der-waals TM3 I 123 3x54 G.H5 L 349 G.H5.16
Hydrophobic TM3 A 122 3x53 G.H5 Y 356 G.H5.23
Van-der-waals TM3 A 122 3x53 G.H5 Y 356 G.H5.23
Hydrophobic C-term L 311 - G.H5 R 338 G.H5.05
Polar ICL2 P 126 34x50 G.H5 N 352 G.H5.19
Polar TM3 R 119 3x50 G.H5 Y 356 G.H5.23
Hydrophobic TM3 R 119 3x50 G.H5 Y 356 G.H5.23
Van-der-waals TM3 R 119 3x50 G.H5 Y 356 G.H5.23
Hydrophobic C-term V 307 - G.h4s6 I 323 G.h4s6.20
Van-der-waals C-term V 307 - G.h4s6 I 323 G.h4s6.20
Hydrophobic ICL2 L 127 34x51 G.H5 F 341 G.H5.08
Van-der-waals ICL2 L 127 34x51 G.H5 F 341 G.H5.08
Hydrophobic TM6 C 224 6x33 G.H5 L 353 G.H5.20
Van-der-waals TM6 C 224 6x33 G.H5 L 353 G.H5.20
Hydrophobic TM6 Q 220 6x29 G.H5 V 359 G.H5.26
Van-der-waals TM6 Q 220 6x29 G.H5 V 359 G.H5.26
Polar TM6 Q 220 6x29 G.H5 Q 350 G.H5.17
Hydrophobic ICL1 D 55 - G.H5 E 355 G.H5.22
Van-der-waals ICL1 D 55 - G.H5 E 355 G.H5.22
Hydrophobic TM3 R 119 3x50 G.H5 L 358 G.H5.25
Van-der-waals TM3 R 119 3x50 G.H5 L 358 G.H5.25
Polar TM7 Y 288 7x53 G.H5 N 357 G.H5.24
Van-der-waals TM7 Y 288 7x53 G.H5 N 357 G.H5.24
Polar ICL2 R 133 34x57 G.hns1 R 37 G.hns1.02
Polar C-term V 307 - G.S6 I 324 G.S6.01
Van-der-waals C-term V 307 - G.S6 I 324 G.S6.01
Hydrophobic ICL2 H 131 34x55 G.S1 L 40 G.S1.02
Hydrophobic H8 P 304 8x59 G.h4s6 D 319 G.h4s6.10
Hydrophobic C-term L 309 - G.H5 D 346 G.H5.13
Hydrophobic TM3 I 123 3x54 G.H5 L 358 G.H5.25
Ionic H8 H 302 8x57 G.h4s6 D 321 G.h4s6.12
Polar H8 H 302 8x57 G.h4s6 D 321 G.h4s6.12
Hydrophobic H8 H 302 8x57 G.h4s6 D 321 G.h4s6.12
Van-der-waals H8 H 302 8x57 G.h4s6 D 321 G.h4s6.12
Hydrophobic TM5 R 211 5x68 G.H5 L 349 G.H5.16
Van-der-waals TM5 R 211 5x68 G.H5 L 349 G.H5.16
Hydrophobic ICL1 Y 56 - G.H5 E 355 G.H5.22
Van-der-waals ICL1 Y 56 - G.H5 E 355 G.H5.22
Ionic H8 R 306 8x61 G.H4 D 315 G.H4.17
Polar H8 R 306 8x61 G.H4 D 315 G.H4.17
Hydrophobic H8 R 306 8x61 G.H4 D 315 G.H4.17
Van-der-waals H8 R 306 8x61 G.H4 D 315 G.H4.17
Polar TM3 A 122 3x53 G.H5 N 352 G.H5.19
Hydrophobic TM3 A 122 3x53 G.H5 N 352 G.H5.19
Van-der-waals TM3 A 122 3x53 G.H5 N 352 G.H5.19
Hydrophobic TM7 V 291 7x56 G.H5 L 358 G.H5.25
Hydrophobic ICL2 L 127 34x51 G.S1 L 40 G.S1.02
Van-der-waals ICL2 L 127 34x51 G.S1 L 40 G.S1.02
Polar C-term V 307 - G.S6 Y 325 G.S6.02
Hydrophobic C-term V 307 - G.S6 Y 325 G.S6.02
Van-der-waals C-term V 307 - G.S6 Y 325 G.S6.02