G13 - GPR87 complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

G12/13

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 77.5

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.5
PAE mean: 18.5


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Aromatic ICL3 F 240 - G.S6 Y 343 G.S6.02
Hydrophobic ICL3 F 240 - G.S6 Y 343 G.S6.02
Van-der-waals ICL3 F 240 - G.S6 Y 343 G.S6.02
Hydrophobic C-term R 350 - G.h4s6 P 341 G.h4s6.20
Van-der-waals C-term R 350 - G.h4s6 P 341 G.h4s6.20
Hydrophobic ICL2 P 146 34x50 G.H5 I 366 G.H5.15
Van-der-waals ICL2 P 146 34x50 G.H5 I 366 G.H5.15
Polar TM6 R 248 6x31 G.h4s6 Q 339 G.h4s6.13
Hydrophobic TM6 R 248 6x31 G.h4s6 Q 339 G.h4s6.13
Van-der-waals TM6 R 248 6x31 G.h4s6 Q 339 G.h4s6.13
Hydrophobic ICL2 F 147 34x51 G.H5 V 362 G.H5.11
Hydrophobic TM3 V 143 3x54 G.H5 L 367 G.H5.16
Van-der-waals TM3 V 143 3x54 G.H5 L 367 G.H5.16
Polar TM7 M 317 7x56 G.H5 L 376 G.H5.25
Polar C-term R 350 - G.S6 L 342 G.S6.01
Hydrophobic TM3 V 143 3x54 G.H5 L 371 G.H5.20
Hydrophobic ICL2 F 147 34x51 G.S3 V 216 G.S3.01
Van-der-waals ICL2 F 147 34x51 G.S3 V 216 G.S3.01
Hydrophobic TM6 H 250 6x33 G.H5 M 375 G.H5.24
Van-der-waals TM6 H 250 6x33 G.H5 M 375 G.H5.24
Polar C-term R 350 - G.H5 H 368 G.H5.17
Hydrophobic C-term R 350 - G.H5 H 368 G.H5.17
Van-der-waals C-term R 350 - G.H5 H 368 G.H5.17
Hydrophobic TM3 V 143 3x54 G.H5 L 374 G.H5.23
Polar C-term S 347 - G.h4s6 Q 339 G.h4s6.13
Hydrophobic C-term S 347 - G.h4s6 Q 339 G.h4s6.13
Van-der-waals C-term S 347 - G.h4s6 Q 339 G.h4s6.13
Polar C-term S 347 - G.h4s6 Q 338 G.h4s6.12
Hydrophobic C-term S 347 - G.h4s6 Q 338 G.h4s6.12
Van-der-waals C-term S 347 - G.h4s6 Q 338 G.h4s6.12
Ionic C-term D 354 - G.S6 H 345 G.S6.04
Polar C-term D 354 - G.S6 H 345 G.S6.04
Hydrophobic C-term D 354 - G.S6 H 345 G.S6.04
Van-der-waals C-term D 354 - G.S6 H 345 G.S6.04
Aromatic ICL2 F 147 34x51 G.H5 F 359 G.H5.08
Hydrophobic ICL2 F 147 34x51 G.H5 F 359 G.H5.08
Hydrophobic TM5 Y 232 5x64 G.H5 L 367 G.H5.16
Van-der-waals TM5 Y 232 5x64 G.H5 L 367 G.H5.16
Hydrophobic H8 C 318 8x47 G.H5 L 376 G.H5.25
Polar C-term S 347 - G.h4s6 Q 337 G.h4s6.11
Hydrophobic C-term S 347 - G.h4s6 Q 337 G.h4s6.11
Van-der-waals C-term S 347 - G.h4s6 Q 337 G.h4s6.11
Polar TM7 M 317 7x56 G.H5 M 375 G.H5.24
Hydrophobic TM7 M 317 7x56 G.H5 M 375 G.H5.24
Van-der-waals TM7 M 317 7x56 G.H5 M 375 G.H5.24
Polar TM5 Y 232 5x64 G.H5 K 363 G.H5.12
Hydrophobic TM5 Y 232 5x64 G.H5 K 363 G.H5.12
Van-der-waals TM5 Y 232 5x64 G.H5 K 363 G.H5.12
Hydrophobic TM6 K 249 6x32 G.H5 M 375 G.H5.24
Hydrophobic ICL2 F 147 34x51 G.H5 I 366 G.H5.15
Van-der-waals ICL2 F 147 34x51 G.H5 I 366 G.H5.15
Hydrophobic C-term I 351 - G.H4 R 331 G.H4.16
Van-der-waals C-term I 351 - G.H4 R 331 G.H4.16
Polar H8 R 319 8x48 G.H5 M 375 G.H5.24
Hydrophobic H8 R 319 8x48 G.H5 M 375 G.H5.24
Van-der-waals H8 R 319 8x48 G.H5 M 375 G.H5.24
Polar H8 C 318 8x47 G.H5 Q 377 G.H5.26
Hydrophobic H8 C 318 8x47 G.H5 Q 377 G.H5.26
Van-der-waals H8 C 318 8x47 G.H5 Q 377 G.H5.26
Hydrophobic TM6 H 250 6x33 G.H5 L 371 G.H5.20
Polar C-term Y 352 - G.S6 L 342 G.S6.01
Hydrophobic C-term Y 352 - G.S6 L 342 G.S6.01
Van-der-waals C-term Y 352 - G.S6 L 342 G.S6.01
Hydrophobic TM7 M 317 7x56 G.H5 L 374 G.H5.23
Van-der-waals TM7 M 317 7x56 G.H5 L 374 G.H5.23
Polar TM3 R 139 3x50 G.H5 L 374 G.H5.23
Hydrophobic TM3 R 139 3x50 G.H5 L 374 G.H5.23
Van-der-waals TM3 R 139 3x50 G.H5 L 374 G.H5.23
Van-der-waals TM5 S 236 5x68 G.H5 H 368 G.H5.17
Ionic ICL2 D 149 34x53 G.hns1 R 47 G.hns1.03
Polar ICL2 D 149 34x53 G.hns1 R 47 G.hns1.03
Hydrophobic ICL2 D 149 34x53 G.hns1 R 47 G.hns1.03
Van-der-waals ICL2 D 149 34x53 G.hns1 R 47 G.hns1.03
Hydrophobic C-term Y 352 - G.S6 Y 343 G.S6.02
Van-der-waals C-term Y 352 - G.S6 Y 343 G.S6.02
Hydrophobic TM6 H 250 6x33 G.H5 H 368 G.H5.17
Ionic C-term R 346 - G.h4s6 D 336 G.h4s6.10
Polar C-term R 346 - G.h4s6 D 336 G.h4s6.10
Hydrophobic C-term R 346 - G.h4s6 D 336 G.h4s6.10
Van-der-waals C-term R 346 - G.h4s6 D 336 G.h4s6.10
Polar H8 S 320 8x49 G.H5 L 376 G.H5.25
Van-der-waals H8 S 320 8x49 G.H5 L 376 G.H5.25
Polar C-term Y 352 - G.S6 H 344 G.S6.03
Hydrophobic C-term Y 352 - G.S6 H 344 G.S6.03
Van-der-waals C-term Y 352 - G.S6 H 344 G.S6.03
Polar TM3 K 142 3x53 G.H5 N 370 G.H5.19
Hydrophobic TM3 K 142 3x53 G.H5 N 370 G.H5.19
Van-der-waals TM3 K 142 3x53 G.H5 N 370 G.H5.19
Hydrophobic TM3 K 142 3x53 G.H5 L 374 G.H5.23
Van-der-waals H8 R 319 8x48 G.H5 Q 377 G.H5.26
Hydrophobic ICL3 F 240 - G.H5 D 364 G.H5.13
Van-der-waals ICL3 F 240 - G.H5 D 364 G.H5.13
Polar TM2 T 74 2x37 G.H5 Q 377 G.H5.26
Hydrophobic TM2 T 74 2x37 G.H5 Q 377 G.H5.26
Van-der-waals TM2 T 74 2x37 G.H5 Q 377 G.H5.26
Hydrophobic ICL2 F 147 34x51 G.H5 K 363 G.H5.12
Polar ICL2 G 148 34x52 G.hns1 R 47 G.hns1.03
Hydrophobic ICL2 G 148 34x52 G.hns1 R 47 G.hns1.03
Polar C-term Y 352 - G.H5 R 360 G.H5.09
Hydrophobic C-term Y 352 - G.H5 R 360 G.H5.09
Van-der-waals C-term Y 352 - G.H5 R 360 G.H5.09
Hydrophobic TM5 S 236 5x68 G.H5 L 367 G.H5.16
Polar ICL3 Q 239 - G.H5 R 360 G.H5.09
Hydrophobic ICL3 Q 239 - G.H5 R 360 G.H5.09
Van-der-waals ICL3 Q 239 - G.H5 R 360 G.H5.09
Polar TM5 S 236 5x68 G.H5 D 364 G.H5.13
Hydrophobic TM5 S 236 5x68 G.H5 D 364 G.H5.13
Van-der-waals TM5 S 236 5x68 G.H5 D 364 G.H5.13
Polar C-term S 347 - G.h4s6 D 336 G.h4s6.10
Hydrophobic C-term S 347 - G.h4s6 D 336 G.h4s6.10
Van-der-waals C-term S 347 - G.h4s6 D 336 G.h4s6.10
Hydrophobic TM6 S 253 6x36 G.H5 M 375 G.H5.24
Polar ICL2 S 150 34x54 G.hns1 R 47 G.hns1.03
Hydrophobic ICL3 F 240 - G.H5 H 368 G.H5.17
Hydrophobic ICL2 P 146 34x50 G.H5 K 363 G.H5.12
Van-der-waals ICL2 P 146 34x50 G.H5 K 363 G.H5.12
Hydrophobic ICL3 F 240 - G.h4s6 P 341 G.h4s6.20
Van-der-waals ICL3 F 240 - G.h4s6 P 341 G.h4s6.20
Polar C-term D 354 - G.S6 F 346 G.S6.05
Aromatic C-term Y 352 - G.S6 H 345 G.S6.04
Hydrophobic C-term Y 352 - G.S6 H 345 G.S6.04
Van-der-waals C-term Y 352 - G.S6 H 345 G.S6.04
Polar ICL1 K 73 - G.hns1 K 46 G.hns1.02
Polar C-term Q 342 - G.h4s6 Q 339 G.h4s6.13
Van-der-waals C-term Q 342 - G.h4s6 Q 339 G.h4s6.13
Polar TM3 V 144 3x55 G.H5 K 363 G.H5.12
Hydrophobic TM3 V 144 3x55 G.H5 K 363 G.H5.12
Van-der-waals TM3 V 144 3x55 G.H5 K 363 G.H5.12
Hydrophobic ICL2 F 147 34x51 G.S1 V 49 G.S1.02
Van-der-waals ICL2 F 147 34x51 G.S1 V 49 G.S1.02
Polar H8 R 319 8x48 G.H5 L 376 G.H5.25
Hydrophobic H8 R 319 8x48 G.H5 L 376 G.H5.25
Van-der-waals H8 R 319 8x48 G.H5 L 376 G.H5.25
Hydrophobic C-term V 349 - G.H4 R 331 G.H4.16
Van-der-waals C-term V 349 - G.H4 R 331 G.H4.16
Hydrophobic TM5 I 233 5x65 G.H5 L 371 G.H5.20
Hydrophobic H8 S 320 8x49 G.H5 Q 377 G.H5.26
Van-der-waals H8 S 320 8x49 G.H5 Q 377 G.H5.26