Go - EP1 receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 84.8

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.7
PAE mean: 14.4


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM2 F 73 2x39 G.H5 G 352 G.H5.24
Van-der-waals TM2 F 73 2x39 G.H5 G 352 G.H5.24
Hydrophobic TM6 Q 298 6x36 G.H5 L 353 G.H5.25
Van-der-waals TM6 Q 298 6x36 G.H5 L 353 G.H5.25
Hydrophobic ICL2 L 143 34x51 G.H5 F 336 G.H5.08
Hydrophobic ICL2 P 142 34x50 G.H5 I 343 G.H5.15
Polar C-term H 401 - G.s1h1 G 42 G.s1h1.03
Hydrophobic C-term F 402 - G.H3 L 250 G.H3.08
Van-der-waals C-term F 402 - G.H3 L 250 G.H3.08
Polar C-term H 401 - G.H2 R 206 G.H2.01
Aromatic C-term H 401 - G.H2 R 206 G.H2.01
Hydrophobic C-term H 401 - G.H2 R 206 G.H2.01
Van-der-waals C-term H 401 - G.H2 R 206 G.H2.01
Polar TM2 A 70 2x36 G.H5 G 350 G.H5.22
Hydrophobic TM2 A 70 2x36 G.H5 G 350 G.H5.22
Van-der-waals TM2 A 70 2x36 G.H5 G 350 G.H5.22
Hydrophobic C-term F 402 - G.s1h1 A 41 G.s1h1.02
Ionic TM5 R 236 5x70 G.H5 D 341 G.H5.13
Polar TM5 R 236 5x70 G.H5 D 341 G.H5.13
Hydrophobic TM5 R 236 5x70 G.H5 D 341 G.H5.13
Van-der-waals TM5 R 236 5x70 G.H5 D 341 G.H5.13
Hydrophobic TM6 M 295 6x33 G.H5 Y 354 G.H5.26
Van-der-waals TM6 M 295 6x33 G.H5 Y 354 G.H5.26
Hydrophobic ICL2 L 143 34x51 G.S3 L 195 G.S3.01
Van-der-waals ICL2 L 143 34x51 G.S3 L 195 G.S3.01
Hydrophobic TM3 V 139 3x54 G.H5 I 344 G.H5.16
Polar TM6 A 288 6x26 G.H5 Y 354 G.H5.26
Hydrophobic C-term F 402 - G.s3h2 G 203 G.s3h2.01
Van-der-waals C-term F 402 - G.s3h2 G 203 G.s3h2.01
Polar TM3 R 135 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 135 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 135 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 R 135 3x50 G.H5 L 353 G.H5.25
Hydrophobic C-term F 402 - G.H3 I 254 G.H3.12
Hydrophobic ICL2 P 142 34x50 G.H5 T 340 G.H5.12
Polar TM2 S 69 2x35 G.H5 N 346 G.H5.18
Hydrophobic TM6 R 287 6x25 G.h4s6 P 315 G.h4s6.09
Hydrophobic C-term W 386 - G.H3 F 259 G.H3.17
Hydrophobic ICL2 L 143 34x51 G.H5 I 343 G.H5.15
Ionic C-term H 401 - G.s4h3 E 237 G.s4h3.10
Hydrophobic C-term H 401 - G.s4h3 E 237 G.s4h3.10
Van-der-waals C-term H 401 - G.s4h3 E 237 G.s4h3.10
Polar TM5 R 236 5x70 G.S6 Y 320 G.S6.02
Van-der-waals TM5 R 236 5x70 G.S6 Y 320 G.S6.02
Hydrophobic C-term F 402 - G.s1h1 G 42 G.s1h1.03
Polar ICL2 P 142 34x50 G.H5 N 347 G.H5.19
Hydrophobic ICL2 P 142 34x50 G.H5 I 344 G.H5.16
Van-der-waals ICL2 P 142 34x50 G.H5 I 344 G.H5.16
Hydrophobic TM5 L 229 5x63 G.H5 L 348 G.H5.20
Van-der-waals TM5 L 229 5x63 G.H5 L 348 G.H5.20
Aromatic TM6 H 291 6x29 G.H5 Y 354 G.H5.26
Hydrophobic TM6 H 291 6x29 G.H5 Y 354 G.H5.26
Van-der-waals TM6 H 291 6x29 G.H5 Y 354 G.H5.26
Hydrophobic TM6 M 295 6x33 G.H5 L 353 G.H5.25
Van-der-waals TM6 M 295 6x33 G.H5 L 353 G.H5.25
Polar C-term S 397 - G.H2 E 208 G.H2.03
Ionic TM5 R 236 5x70 G.h4s6 E 318 G.h4s6.12
Polar TM5 R 236 5x70 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM5 R 236 5x70 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM5 R 236 5x70 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM2 S 69 2x35 G.H5 G 350 G.H5.22
Van-der-waals TM2 S 69 2x35 G.H5 G 350 G.H5.22
Hydrophobic TM2 R 68 2x34 G.hns1 A 31 G.hns1.02
Van-der-waals TM2 R 68 2x34 G.hns1 A 31 G.hns1.02
Aromatic C-term W 386 - G.H3 K 258 G.H3.16
Hydrophobic C-term W 386 - G.H3 K 258 G.H3.16
Van-der-waals C-term W 386 - G.H3 K 258 G.H3.16
Hydrophobic C-term L 399 - G.H2 R 206 G.H2.01
Van-der-waals C-term L 399 - G.H2 R 206 G.H2.01
Van-der-waals C-term F 402 - G.H1 K 46 G.H1.01
Ionic TM5 R 240 5x74 G.H4 E 309 G.H4.16
Polar TM5 R 240 5x74 G.H4 E 309 G.H4.16
Van-der-waals TM5 R 240 5x74 G.H4 E 309 G.H4.16
Polar ICL2 H 145 34x53 G.H5 N 347 G.H5.19
Hydrophobic ICL2 H 145 34x53 G.H5 N 347 G.H5.19
Van-der-waals ICL2 H 145 34x53 G.H5 N 347 G.H5.19
Hydrophobic TM6 M 295 6x33 G.H5 L 348 G.H5.20
Van-der-waals TM6 M 295 6x33 G.H5 L 348 G.H5.20
Polar ICL3 S 284 - G.h4s6 N 312 G.h4s6.02
Polar C-term S 400 - G.H2 R 209 G.H2.04
Van-der-waals C-term S 400 - G.H2 R 209 G.H2.04
Hydrophobic TM2 F 73 2x39 G.H5 C 351 G.H5.23
Van-der-waals TM2 F 73 2x39 G.H5 C 351 G.H5.23
Hydrophobic C-term F 402 - G.s1h1 G 40 G.s1h1.01
Van-der-waals C-term F 402 - G.s1h1 G 40 G.s1h1.01
Aromatic C-term F 402 - G.H2 R 209 G.H2.04
Hydrophobic C-term F 402 - G.H2 R 209 G.H2.04
Van-der-waals C-term F 402 - G.H2 R 209 G.H2.04
Hydrophobic TM3 V 139 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 V 139 3x54 G.H5 L 348 G.H5.20
Ionic TM5 R 239 5x73 G.H5 D 337 G.H5.09
Hydrophobic C-term F 402 - G.S1 L 39 G.S1.07
Hydrophobic TM6 L 299 6x37 G.H5 L 353 G.H5.25
Hydrophobic TM2 F 73 2x39 G.H5 G 350 G.H5.22
Van-der-waals TM2 F 73 2x39 G.H5 G 350 G.H5.22
Ionic TM2 R 67 2x33 G.h3s5 D 262 G.h3s5.02
Polar TM2 R 67 2x33 G.h3s5 D 262 G.h3s5.02
Hydrophobic TM2 R 67 2x33 G.h3s5 D 262 G.h3s5.02
Van-der-waals TM2 R 67 2x33 G.h3s5 D 262 G.h3s5.02
Polar H8 R 355 8x47 G.H5 G 352 G.H5.24
Hydrophobic H8 R 355 8x47 G.H5 G 352 G.H5.24
Van-der-waals H8 R 355 8x47 G.H5 G 352 G.H5.24
Polar TM3 G 138 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 G 138 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 G 138 3x53 G.H5 N 347 G.H5.19