Go - SST2 receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 86.4

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.8
PAE mean: 12.2


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Polar TM6 K 246 6x25 G.h4s6 P 315 G.h4s6.09
Hydrophobic TM5 I 231 5x61 G.H5 L 353 G.H5.25
Hydrophobic ICL2 P 147 34x50 G.H5 I 343 G.H5.15
Van-der-waals ICL2 P 147 34x50 G.H5 I 343 G.H5.15
Hydrophobic TM3 V 144 3x54 G.H5 L 348 G.H5.20
Van-der-waals TM3 V 144 3x54 G.H5 L 348 G.H5.20
Polar TM6 S 250 6x29 G.H5 Y 354 G.H5.26
Hydrophobic TM6 S 250 6x29 G.H5 Y 354 G.H5.26
Van-der-waals TM6 S 250 6x29 G.H5 Y 354 G.H5.26
Polar C-term L 361 - G.HN K 24 G.HN.48
Hydrophobic C-term L 361 - G.HN K 24 G.HN.48
Van-der-waals C-term L 361 - G.HN K 24 G.HN.48
Polar ICL2 R 154 34x57 G.H5 C 351 G.H5.23
Hydrophobic TM5 V 235 5x65 G.H5 L 348 G.H5.20
Polar TM6 S 244 6x23 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 S 244 6x23 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 S 244 6x23 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM2 T 78 2x39 G.H5 C 351 G.H5.23
Polar ICL2 R 154 34x57 G.H5 N 347 G.H5.19
Van-der-waals TM6 V 254 6x33 G.H5 L 353 G.H5.25
Hydrophobic TM7 L 315 7x56 G.H5 G 352 G.H5.24
Polar C-term T 354 - G.h2s4 E 217 G.h2s4.02
Hydrophobic C-term T 354 - G.h2s4 E 217 G.h2s4.02
Van-der-waals C-term T 354 - G.h2s4 E 217 G.h2s4.02
Polar C-term S 368 - G.HN C 3 G.HN.09
Hydrophobic C-term S 368 - G.HN C 3 G.HN.09
Polar TM3 R 140 3x50 G.H5 C 351 G.H5.23
Hydrophobic TM3 R 140 3x50 G.H5 C 351 G.H5.23
Van-der-waals TM3 R 140 3x50 G.H5 C 351 G.H5.23
Polar C-term N 362 - G.HN K 24 G.HN.48
Hydrophobic C-term N 362 - G.HN K 24 G.HN.48
Van-der-waals C-term N 362 - G.HN K 24 G.HN.48
Polar TM6 R 247 6x26 G.S6 Y 320 G.S6.02
Hydrophobic TM5 S 238 5x68 G.H5 I 344 G.H5.16
Van-der-waals TM5 S 238 5x68 G.H5 I 344 G.H5.16
Hydrophobic TM6 V 254 6x33 G.H5 L 348 G.H5.20
Ionic TM6 R 247 6x26 G.h4s6 E 318 G.h4s6.12
Polar TM6 R 247 6x26 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 R 247 6x26 G.h4s6 E 318 G.h4s6.12
Hydrophobic TM6 V 258 6x37 G.H5 L 353 G.H5.25
Polar TM6 K 246 6x25 G.h4s6 S 314 G.h4s6.08
Van-der-waals TM6 K 246 6x25 G.h4s6 S 314 G.h4s6.08
Ionic TM6 R 247 6x26 G.H5 D 341 G.H5.13
Polar TM6 R 247 6x26 G.H5 D 341 G.H5.13
Hydrophobic TM6 R 247 6x26 G.H5 D 341 G.H5.13
Van-der-waals TM6 R 247 6x26 G.H5 D 341 G.H5.13
Polar TM6 K 246 6x25 G.h4s6 K 317 G.h4s6.11
Van-der-waals TM6 K 246 6x25 G.h4s6 K 317 G.h4s6.11
Hydrophobic TM3 V 144 3x54 G.H5 I 344 G.H5.16
Van-der-waals TM6 K 246 6x25 G.h4s6 N 312 G.h4s6.02
Polar TM3 A 143 3x53 G.H5 N 347 G.H5.19
Hydrophobic TM3 A 143 3x53 G.H5 N 347 G.H5.19
Van-der-waals TM3 A 143 3x53 G.H5 N 347 G.H5.19
Polar TM5 S 238 5x68 G.H5 D 341 G.H5.13
Hydrophobic TM5 S 238 5x68 G.H5 D 341 G.H5.13
Van-der-waals TM5 S 238 5x68 G.H5 D 341 G.H5.13
Hydrophobic ICL2 I 148 34x51 G.S3 L 195 G.S3.01
Van-der-waals ICL2 I 148 34x51 G.S3 L 195 G.S3.01
Hydrophobic ICL3 V 242 - G.H5 D 337 G.H5.09
Hydrophobic ICL2 P 147 34x50 G.H5 I 344 G.H5.16
Hydrophobic ICL2 I 148 34x51 G.H5 F 336 G.H5.08
Van-der-waals TM6 R 247 6x26 G.H5 I 344 G.H5.16
Hydrophobic ICL3 V 242 - G.H5 D 341 G.H5.13
Van-der-waals ICL3 V 242 - G.H5 D 341 G.H5.13
Hydrophobic TM3 R 140 3x50 G.H5 L 353 G.H5.25
Van-der-waals TM3 R 140 3x50 G.H5 L 353 G.H5.25
Polar TM2 T 78 2x39 G.H5 G 350 G.H5.22
Van-der-waals TM2 T 78 2x39 G.H5 G 350 G.H5.22
Hydrophobic C-term N 351 - G.h3s5 I 261 G.h3s5.01
Van-der-waals C-term N 351 - G.h3s5 I 261 G.h3s5.01
Hydrophobic TM5 K 234 5x64 G.H5 I 344 G.H5.16
Van-der-waals TM5 K 234 5x64 G.H5 I 344 G.H5.16
Polar TM6 K 253 6x32 G.H5 Y 354 G.H5.26
Hydrophobic TM6 K 253 6x32 G.H5 Y 354 G.H5.26
Van-der-waals TM6 K 253 6x32 G.H5 Y 354 G.H5.26
Hydrophobic TM6 K 246 6x25 G.h4s6 E 318 G.h4s6.12
Van-der-waals TM6 K 246 6x25 G.h4s6 E 318 G.h4s6.12
Polar C-term R 358 - G.hns1 A 31 G.hns1.02
Hydrophobic C-term R 358 - G.hns1 A 31 G.hns1.02
Van-der-waals C-term R 358 - G.hns1 A 31 G.hns1.02
Hydrophobic H8 S 316 8x47 G.H5 G 352 G.H5.24
Hydrophobic TM3 A 143 3x53 G.H5 C 351 G.H5.23
Hydrophobic ICL2 I 148 34x51 G.s2s3 N 194 G.s2s3.02
Ionic ICL3 R 241 - G.H5 D 337 G.H5.09
Polar ICL3 R 241 - G.H5 D 337 G.H5.09
Hydrophobic ICL3 R 241 - G.H5 D 337 G.H5.09
Van-der-waals ICL3 R 241 - G.H5 D 337 G.H5.09
Hydrophobic ICL3 V 242 - G.S6 Y 320 G.S6.02
Hydrophobic TM6 M 257 6x36 G.H5 L 353 G.H5.25
Van-der-waals TM6 M 257 6x36 G.H5 L 353 G.H5.25
Hydrophobic ICL3 V 242 - G.H5 A 338 G.H5.10
Hydrophobic TM6 M 257 6x36 G.H5 G 352 G.H5.24
Van-der-waals TM6 M 257 6x36 G.H5 G 352 G.H5.24
Hydrophobic ICL2 P 147 34x50 G.H5 T 340 G.H5.12
Polar ICL3 G 239 - G.H5 D 341 G.H5.13