G13 - TAS2R13 complex model

GPCR CLASS (FAMILY)

T (Taste 2)

SPECIES

Homo sapiens

G PROTEIN FAMILY

G12/13

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 77.6

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.5
iPTM Score: 0.3
PAE mean: 24.0


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic ECL2 F 172 - G.H5 L 371 G.H5.20
Van-der-waals ECL2 F 172 - G.H5 L 371 G.H5.20
Hydrophobic TM3 L 82 3x25 G.H5 K 372 G.H5.21
Van-der-waals TM3 L 82 3x25 G.H5 K 372 G.H5.21
Polar ECL1 F 76 - G.H5 D 369 G.H5.18
Hydrophobic ECL1 F 76 - G.H5 D 369 G.H5.18
Van-der-waals ECL1 F 76 - G.H5 D 369 G.H5.18
Hydrophobic TM3 W 89 3x32 G.H5 Q 377 G.H5.26
Van-der-waals TM3 W 89 3x32 G.H5 Q 377 G.H5.26
Hydrophobic ECL1 F 76 - G.H5 L 374 G.H5.23
Van-der-waals ECL1 F 76 - G.H5 L 374 G.H5.23
Hydrophobic ECL2 W 165 - G.H5 L 357 G.H5.06
Van-der-waals ECL2 W 165 - G.H5 L 357 G.H5.06
Polar TM2 S 65 2x60 G.H5 L 374 G.H5.23
Van-der-waals TM2 S 65 2x60 G.H5 L 374 G.H5.23
Hydrophobic ECL2 F 172 - G.H5 K 372 G.H5.21
Polar TM2 H 71 2x66 G.hns1 K 46 G.hns1.02
Aromatic TM2 H 71 2x66 G.hns1 K 46 G.hns1.02
Hydrophobic TM2 H 71 2x66 G.hns1 K 46 G.hns1.02
Van-der-waals TM2 H 71 2x66 G.hns1 K 46 G.hns1.02
Hydrophobic ECL2 S 176 - G.H5 M 375 G.H5.24
Hydrophobic TM3 L 82 3x25 G.H5 L 376 G.H5.25
Van-der-waals TM3 L 82 3x25 G.H5 L 376 G.H5.25
Polar TM2 L 63 2x58 G.H5 Q 377 G.H5.26
Van-der-waals TM2 L 63 2x58 G.H5 Q 377 G.H5.26
Polar ECL2 S 168 - G.H5 D 361 G.H5.10
Hydrophobic ECL2 S 168 - G.H5 D 361 G.H5.10
Van-der-waals ECL2 S 168 - G.H5 D 361 G.H5.10
Aromatic ECL2 F 172 - G.H5 H 368 G.H5.17
Hydrophobic ECL2 F 172 - G.H5 H 368 G.H5.17
Van-der-waals ECL2 F 172 - G.H5 H 368 G.H5.17
Aromatic ECL2 F 175 - G.H5 K 372 G.H5.21
Hydrophobic ECL2 F 175 - G.H5 K 372 G.H5.21
Van-der-waals ECL2 F 175 - G.H5 K 372 G.H5.21
Polar TM2 S 65 2x60 G.H5 L 376 G.H5.25
Hydrophobic TM2 S 65 2x60 G.H5 L 376 G.H5.25
Van-der-waals TM2 S 65 2x60 G.H5 L 376 G.H5.25
Hydrophobic ECL1 I 75 - G.H5 Q 373 G.H5.22
Van-der-waals ECL1 I 75 - G.H5 Q 373 G.H5.22
Polar TM2 E 61 2x56 G.H5 Q 377 G.H5.26
Hydrophobic TM2 E 61 2x56 G.H5 Q 377 G.H5.26
Van-der-waals TM2 E 61 2x56 G.H5 Q 377 G.H5.26
Hydrophobic TM2 L 70 2x65 G.hns1 R 47 G.hns1.03
Hydrophobic ECL2 M 169 - G.H5 R 360 G.H5.09
Van-der-waals ECL2 M 169 - G.H5 R 360 G.H5.09
Polar TM2 L 68 2x63 G.H5 Q 373 G.H5.22
Hydrophobic TM2 L 68 2x63 G.H5 Q 373 G.H5.22
Aromatic ECL2 Y 159 - G.S6 Y 343 G.S6.02
Hydrophobic ECL2 Y 159 - G.S6 Y 343 G.S6.02
Van-der-waals ECL2 Y 159 - G.S6 Y 343 G.S6.02
Hydrophobic ECL1 V 77 - G.S5 S 285 G.S5.01
Hydrophobic TM2 W 66 2x61 G.H5 L 374 G.H5.23
Van-der-waals TM2 W 66 2x61 G.H5 L 374 G.H5.23
Polar ECL2 M 169 - G.H5 D 364 G.H5.13
Hydrophobic ECL2 M 169 - G.H5 D 364 G.H5.13
Van-der-waals ECL2 M 169 - G.H5 D 364 G.H5.13
Hydrophobic TM3 M 85 3x28 G.H5 Q 373 G.H5.22
Van-der-waals TM3 M 85 3x28 G.H5 Q 373 G.H5.22
Hydrophobic TM1 P 6 1x32 G.hns1 R 47 G.hns1.03
Hydrophobic TM3 I 86 3x29 G.H5 L 376 G.H5.25
Van-der-waals TM3 I 86 3x29 G.H5 L 376 G.H5.25
Hydrophobic ECL2 N 166 - G.H5 L 357 G.H5.06
Van-der-waals ECL2 N 166 - G.H5 L 357 G.H5.06
Hydrophobic ECL1 F 76 - G.H5 N 370 G.H5.19
Van-der-waals ECL1 F 76 - G.H5 N 370 G.H5.19
Polar ECL2 Y 159 - G.H5 T 365 G.H5.14
Hydrophobic ECL2 Y 159 - G.H5 T 365 G.H5.14
Van-der-waals ECL2 Y 159 - G.H5 T 365 G.H5.14
Polar ECL2 M 169 - G.H5 D 361 G.H5.10
Hydrophobic ECL1 L 73 - G.H5 N 370 G.H5.19
Van-der-waals ECL1 L 73 - G.H5 N 370 G.H5.19
Hydrophobic ECL1 F 76 - G.H5 Q 373 G.H5.22
Van-der-waals ECL1 F 76 - G.H5 Q 373 G.H5.22
Hydrophobic ECL1 F 76 - G.H5 L 371 G.H5.20
Van-der-waals ECL1 F 76 - G.H5 L 371 G.H5.20
Hydrophobic TM3 M 85 3x28 G.H5 L 376 G.H5.25
Van-der-waals TM3 M 85 3x28 G.H5 L 376 G.H5.25
Van-der-waals TM2 E 61 2x56 G.H5 L 376 G.H5.25
Polar TM2 S 65 2x60 G.H5 Q 377 G.H5.26
Hydrophobic TM2 S 65 2x60 G.H5 Q 377 G.H5.26
Van-der-waals TM2 S 65 2x60 G.H5 Q 377 G.H5.26
Hydrophobic ECL2 F 175 - G.H5 H 368 G.H5.17
Hydrophobic ECL2 M 169 - G.s2s3 K 214 G.s2s3.01
Van-der-waals ECL2 M 169 - G.s2s3 K 214 G.s2s3.01
Polar ECL2 Y 159 - G.H5 D 361 G.H5.10
Hydrophobic TM3 W 89 3x32 G.H5 L 376 G.H5.25
Hydrophobic ECL2 E 160 - G.h4s6 P 341 G.h4s6.20
Hydrophobic ECL2 F 172 - G.H5 M 375 G.H5.24
Hydrophobic ECL2 W 155 - G.H5 K 372 G.H5.21
Van-der-waals ECL2 W 155 - G.H5 K 372 G.H5.21
Polar ECL2 W 155 - G.H5 H 368 G.H5.17
Aromatic ECL2 W 155 - G.H5 H 368 G.H5.17
Hydrophobic ECL2 W 155 - G.H5 H 368 G.H5.17
Van-der-waals ECL2 W 155 - G.H5 H 368 G.H5.17
Polar TM1 E 2 1x28 G.s2s3 N 215 G.s2s3.02
Hydrophobic TM1 E 2 1x28 G.s2s3 N 215 G.s2s3.02
Van-der-waals TM1 E 2 1x28 G.s2s3 N 215 G.s2s3.02
Hydrophobic TM2 A 69 2x64 G.H5 L 374 G.H5.23
Van-der-waals TM2 A 69 2x64 G.H5 L 374 G.H5.23
Van-der-waals ECL1 L 73 - G.H5 D 369 G.H5.18
Polar TM2 Y 72 2x67 G.H5 Q 373 G.H5.22
Van-der-waals TM2 Y 72 2x67 G.H5 Q 373 G.H5.22
Hydrophobic ECL1 F 76 - G.H5 K 372 G.H5.21
Van-der-waals ECL1 F 76 - G.H5 K 372 G.H5.21
Hydrophobic TM5 K 180 5x41 G.H5 M 375 G.H5.24
Van-der-waals TM5 K 180 5x41 G.H5 M 375 G.H5.24
Polar TM2 W 66 2x61 G.H5 Q 377 G.H5.26
Hydrophobic TM2 W 66 2x61 G.H5 Q 377 G.H5.26
Van-der-waals TM2 W 66 2x61 G.H5 Q 377 G.H5.26
Polar TM2 A 69 2x64 G.H5 Q 373 G.H5.22
Hydrophobic TM2 A 69 2x64 G.H5 Q 373 G.H5.22
Van-der-waals TM2 A 69 2x64 G.H5 Q 373 G.H5.22
Hydrophobic TM3 M 85 3x28 G.H5 L 374 G.H5.23
Polar TM2 I 62 2x57 G.H5 Q 377 G.H5.26
Hydrophobic TM2 I 62 2x57 G.H5 Q 377 G.H5.26
Van-der-waals TM2 I 62 2x57 G.H5 Q 377 G.H5.26
Hydrophobic ECL1 L 73 - G.S1 V 49 G.S1.02
Polar ECL2 N 166 - G.H5 R 360 G.H5.09
Van-der-waals ECL2 N 166 - G.H5 R 360 G.H5.09
Polar ECL1 V 77 - G.H5 D 369 G.H5.18
Hydrophobic ECL1 V 77 - G.H5 D 369 G.H5.18
Van-der-waals ECL1 V 77 - G.H5 D 369 G.H5.18
Hydrophobic ECL2 T 163 - G.S6 H 344 G.S6.03
Van-der-waals ECL2 T 163 - G.S6 H 344 G.S6.03