Gi2 - TAS2R13 complex model

GPCR CLASS (FAMILY)

T (Taste 2)

SPECIES

Homo sapiens

G PROTEIN FAMILY

Gi/o

DATE

2023-09-15

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

(pLDDT score) avg.: 87.7

Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.8
iPTM Score: 0.8
PAE mean: 11.6


GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic ICL2 W 124 34x55 G.S3 L 195 G.S3.01
Van-der-waals ICL2 W 124 34x55 G.S3 L 195 G.S3.01
Hydrophobic TM6 A 230 6x34 G.H5 L 349 G.H5.20
Van-der-waals TM6 A 230 6x34 G.H5 L 349 G.H5.20
Polar TM6 R 223 6x27 G.S6 I 320 G.S6.01
Hydrophobic TM6 R 223 6x27 G.S6 I 320 G.S6.01
Van-der-waals TM6 R 223 6x27 G.S6 I 320 G.S6.01
Hydrophobic ICL2 W 124 34x55 G.hns1 A 31 G.hns1.02
Van-der-waals ICL2 W 124 34x55 G.hns1 A 31 G.hns1.02
Hydrophobic TM5 L 205 5x65 G.H5 I 345 G.H5.16
Ionic TM6 H 227 6x31 G.H5 D 342 G.H5.13
Polar TM6 H 227 6x31 G.H5 D 342 G.H5.13
Hydrophobic TM6 H 227 6x31 G.H5 D 342 G.H5.13
Van-der-waals TM6 H 227 6x31 G.H5 D 342 G.H5.13
Aromatic TM6 R 223 6x27 G.S6 Y 321 G.S6.02
Hydrophobic TM6 R 223 6x27 G.S6 Y 321 G.S6.02
Van-der-waals TM6 R 223 6x27 G.S6 Y 321 G.S6.02
Polar TM3 K 110 3x53 G.H5 N 348 G.H5.19
Hydrophobic TM3 K 110 3x53 G.H5 N 348 G.H5.19
Van-der-waals TM3 K 110 3x53 G.H5 N 348 G.H5.19
Hydrophobic H8 A 286 8x48 G.H5 F 355 G.H5.26
Van-der-waals H8 A 286 8x48 G.H5 F 355 G.H5.26
Hydrophobic TM5 H 208 5x68 G.H5 T 341 G.H5.12
Hydrophobic TM6 V 234 6x38 G.H5 L 354 G.H5.25
Hydrophobic TM5 M 212 5x72 G.H5 D 338 G.H5.09
Hydrophobic TM3 I 111 3x54 G.H5 L 354 G.H5.25
Van-der-waals TM3 I 111 3x54 G.H5 L 354 G.H5.25
Hydrophobic H8 N 285 8x47 G.H5 G 353 G.H5.24
Van-der-waals H8 N 285 8x47 G.H5 G 353 G.H5.24
Hydrophobic TM6 H 227 6x31 G.H5 I 345 G.H5.16
Hydrophobic TM3 F 106 3x49 G.H5 C 352 G.H5.23
Hydrophobic TM3 Y 107 3x50 G.H5 L 354 G.H5.25
Hydrophobic TM6 H 227 6x31 G.H5 K 346 G.H5.17
Hydrophobic ICL2 L 120 34x51 G.s2s3 K 193 G.s2s3.01
Polar H8 A 286 8x48 G.H5 G 353 G.H5.24
Hydrophobic H8 A 286 8x48 G.H5 G 353 G.H5.24
Van-der-waals H8 A 286 8x48 G.H5 G 353 G.H5.24
Hydrophobic TM6 V 226 6x30 G.H5 F 355 G.H5.26
Van-der-waals TM6 V 226 6x30 G.H5 F 355 G.H5.26
Polar ICL2 W 124 34x55 G.s2s3 D 194 G.s2s3.02
Hydrophobic ICL2 W 124 34x55 G.s2s3 D 194 G.s2s3.02
Van-der-waals ICL2 W 124 34x55 G.s2s3 D 194 G.s2s3.02
Hydrophobic TM3 I 111 3x54 G.H5 C 352 G.H5.23
Hydrophobic TM5 M 212 5x72 G.H5 D 342 G.H5.13
Van-der-waals TM5 M 212 5x72 G.H5 D 342 G.H5.13
Ionic TM4 K 128 4x40 G.HN E 28 G.HN.52
Polar TM4 K 128 4x40 G.HN E 28 G.HN.52
Hydrophobic TM4 K 128 4x40 G.HN E 28 G.HN.52
Van-der-waals TM4 K 128 4x40 G.HN E 28 G.HN.52
Hydrophobic TM6 V 226 6x30 G.H5 K 346 G.H5.17
Ionic TM5 H 208 5x68 G.H5 D 342 G.H5.13
Polar TM5 H 208 5x68 G.H5 D 342 G.H5.13
Hydrophobic TM5 H 208 5x68 G.H5 D 342 G.H5.13
Van-der-waals TM5 H 208 5x68 G.H5 D 342 G.H5.13
Hydrophobic TM6 V 226 6x30 G.H5 L 349 G.H5.20
Polar TM3 Y 107 3x50 G.H5 C 352 G.H5.23
Hydrophobic TM3 Y 107 3x50 G.H5 C 352 G.H5.23
Van-der-waals TM3 Y 107 3x50 G.H5 C 352 G.H5.23
Ionic TM5 K 211 5x71 G.H5 D 338 G.H5.09
Polar TM5 K 211 5x71 G.H5 D 338 G.H5.09
Hydrophobic TM5 K 211 5x71 G.H5 D 338 G.H5.09
Van-der-waals TM5 K 211 5x71 G.H5 D 338 G.H5.09
Hydrophobic TM5 N 215 5x75 G.H5 F 335 G.H5.06
Van-der-waals TM5 N 215 5x75 G.H5 F 335 G.H5.06
Hydrophobic TM3 I 111 3x54 G.H5 I 345 G.H5.16
Polar H8 N 285 8x47 G.H5 C 352 G.H5.23
Hydrophobic TM3 K 110 3x53 G.H5 C 352 G.H5.23
Polar TM4 N 127 4x39 G.HN R 24 G.HN.48
Polar TM5 Y 216 5x76 G.S6 T 322 G.S6.03
Hydrophobic TM5 Y 216 5x76 G.S6 T 322 G.S6.03
Van-der-waals TM5 Y 216 5x76 G.S6 T 322 G.S6.03
Hydrophobic ICL2 S 113 34x44 G.H5 I 345 G.H5.16
Polar TM6 R 223 6x27 G.H5 K 346 G.H5.17
Hydrophobic TM6 R 223 6x27 G.H5 K 346 G.H5.17
Van-der-waals TM6 R 223 6x27 G.H5 K 346 G.H5.17
Hydrophobic TM6 I 233 6x37 G.H5 L 354 G.H5.25
Van-der-waals TM6 I 233 6x37 G.H5 L 354 G.H5.25
Hydrophobic TM2 V 44 2x39 G.H5 C 352 G.H5.23
Van-der-waals TM2 V 44 2x39 G.H5 C 352 G.H5.23
Ionic TM6 R 223 6x27 G.h4s6 E 319 G.h4s6.12
Polar TM6 R 223 6x27 G.h4s6 E 319 G.h4s6.12
Hydrophobic TM6 R 223 6x27 G.h4s6 E 319 G.h4s6.12
Van-der-waals TM6 R 223 6x27 G.h4s6 E 319 G.h4s6.12
Hydrophobic TM5 Y 216 5x76 G.S6 H 323 G.S6.04
Hydrophobic TM3 I 111 3x54 G.H5 N 348 G.H5.19
Polar ICL2 W 124 34x55 G.hns1 R 32 G.hns1.03
Hydrophobic ICL2 W 124 34x55 G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 W 124 34x55 G.hns1 R 32 G.hns1.03
Van-der-waals TM7 G 284 7x56 G.H5 G 353 G.H5.24
Hydrophobic TM5 H 208 5x68 G.H5 I 345 G.H5.16
Van-der-waals TM5 H 208 5x68 G.H5 I 345 G.H5.16
Hydrophobic TM6 F 237 6x41 G.H5 L 354 G.H5.25
Hydrophobic ICL2 L 120 34x51 G.s2s3 D 194 G.s2s3.02
Van-der-waals ICL2 L 120 34x51 G.s2s3 D 194 G.s2s3.02
Hydrophobic TM3 I 111 3x54 G.H5 L 349 G.H5.20
Van-der-waals TM3 I 111 3x54 G.H5 L 349 G.H5.20
Polar H8 R 289 8x51 G.H5 F 355 G.H5.26
Van-der-waals H8 R 289 8x51 G.H5 F 355 G.H5.26
Hydrophobic TM7 G 284 7x56 G.H5 L 354 G.H5.25
Hydrophobic TM6 H 227 6x31 G.H5 L 349 G.H5.20
Hydrophobic TM2 V 44 2x39 G.H5 D 351 G.H5.22
Van-der-waals TM2 V 44 2x39 G.H5 D 351 G.H5.22
Polar TM5 N 215 5x75 G.H5 D 338 G.H5.09
Van-der-waals TM5 N 215 5x75 G.H5 D 338 G.H5.09
Hydrophobic TM6 A 230 6x34 G.H5 L 354 G.H5.25
Polar TM6 P 222 6x26 G.h4s6 E 319 G.h4s6.12
Hydrophobic TM6 P 222 6x26 G.h4s6 E 319 G.h4s6.12
Van-der-waals TM6 P 222 6x26 G.h4s6 E 319 G.h4s6.12