GPR20 homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Active (Δ distance (Å): 9.99 docs)

VERSION

2018-07-10

MAIN TEMPLATE

LPA6 receptor (sequence similarity: 46%) PDB: 5XSZ

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 78.7 10.5 10.8
Side-chains 27.1 48.4 24.5

Number of backbone templates: 6
Number of rotamer templates: 34

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4N6H
5XSZ
4DJH
5UNG
5DHG
5LWE
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 44 - - - -
N-term 45 - - - -
N-term 46 - - - -
N-term 47 - - - -
N-term 48 - - - -
TM1 49 1.28x28 δ receptor 4N6H - -
TM1 50 1.29x29 δ receptor 4N6H Rhodopsin 5DYS
TM1 51 1.30x30 δ receptor 4N6H NOP receptor 5DHG
TM1 52 1.31x31 LPA6 receptor 5XSZ NOP receptor 5DHG
TM1 53 1.32x32 LPA6 receptor 5XSZ - -
TM1 54 1.33x33 LPA6 receptor 5XSZ CB1 receptor 5XRA
TM1 55 1.34x34 LPA6 receptor 5XSZ AT2 receptor 5UNG
TM1 56 1.35x35 LPA6 receptor 5XSZ Rhodopsin 5DYS
TM1 57 1.36x36 LPA6 receptor 5XSZ μ receptor 5C1M
TM1 58 1.37x37 LPA6 receptor 5XSZ κ receptor 6B73
TM1 59 1.38x38 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM1 60 1.39x39 LPA6 receptor 5XSZ - -
TM1 61 1.40x40 LPA6 receptor 5XSZ US28 4XT1
TM1 62 1.41x41 LPA6 receptor 5XSZ NTS1 receptor 5T04
TM1 63 1.42x42 LPA6 receptor 5XSZ AT2 receptor 5UNG
TM1 64 1.43x43 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM1 65 1.44x44 LPA6 receptor 5XSZ US28 4XT1
TM1 66 1.45x45 LPA6 receptor 5XSZ β2-adrenoceptor 3SN6
TM1 67 1.46x46 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM1 68 1.47x47 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM1 69 1.48x48 LPA6 receptor 5XSZ κ receptor 6B73
TM1 70 1.49x49 LPA6 receptor 5XSZ PAR1 3VW7
TM1 71 1.50x50 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM1 72 1.51x51 LPA6 receptor 5XSZ PAF receptor 5ZKP
TM1 73 1.52x52 LPA6 receptor 5XSZ κ receptor 6B73
TM1 74 1.53x53 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM1 75 1.54x54 LPA6 receptor 5XSZ NTS1 receptor 5T04
TM1 76 1.55x55 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM1 77 1.56x56 LPA6 receptor 5XSZ κ receptor 6B73
TM1 78 1.57x57 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM1 79 1.58x58 LPA6 receptor 5XSZ AT2 receptor 5UNG
TM1 80 1.59x59 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM1 81 1.60x60 LPA6 receptor 5XSZ - -
ICL1 82 12.48x48 - - - -
ICL1 83 12.49x49 κ receptor 4DJH β2-adrenoceptor 4LDE
ICL1 84 12.50x50 κ receptor 4DJH - -
ICL1 85 12.51x51 - - - -
TM2 86 2.37x37 LPA6 receptor 5XSZ κ receptor 6B73
TM2 87 2.38x38 LPA6 receptor 5XSZ Rhodopsin 5DYS
TM2 88 2.39x39 LPA6 receptor 5XSZ AT2 receptor 5UNG
TM2 89 2.40x40 LPA6 receptor 5XSZ PAR1 3VW7
TM2 90 2.41x41 LPA6 receptor 5XSZ κ receptor 6B73
TM2 91 2.42x42 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM2 92 2.43x43 LPA6 receptor 5XSZ - -
TM2 93 2.44x44 LPA6 receptor 5XSZ US28 4XT1
TM2 94 2.45x45 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM2 95 2.46x46 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM2 96 2.47x47 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM2 97 2.48x48 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM2 98 2.49x49 LPA6 receptor 5XSZ 5-HT1B receptor 6G79
TM2 99 2.50x50 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM2 100 2.51x51 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM2 101 2.52x52 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM2 102 2.53x53 LPA6 receptor 5XSZ κ receptor 6B73
TM2 103 2.54x54 LPA6 receptor 5XSZ 5-HT2B receptor 5TUD
TM2 104 2.55x55 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM2 105 2.56x56 LPA6 receptor 5XSZ M2 receptor 4MQT
TM2 106 2.57x57 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM2 107 2.58x58 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM2 108 2.59x59 LPA6 receptor 5XSZ Rhodopsin 5DYS
TM2 109 2.60x60 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM2 110 2.61x61 LPA6 receptor 5XSZ CB1 receptor 5XRA
TM2 111 2.62x62 LPA6 receptor 5XSZ β2-adrenoceptor 3SN6
TM2 112 2.63x63 LPA6 receptor 5XSZ κ receptor 6B73
TM2 113 2.64x64 LPA6 receptor 5XSZ κ receptor 6B73
TM2 114 2.65x65 LPA6 receptor 5XSZ apelin receptor 5VBL
TM2 115 2.66x66 LPA6 receptor 5XSZ A2A receptor 5G53
ECL1 116 - - - -
ECL1 117 - - - -
ECL1 118 - - - -
ECL1 119 - - - -
ECL1 120 - - - -
ECL1 121 - - - -
TM3 122 3.24x24 LPA6 receptor 5XSZ D3 receptor 3PBL
TM3 123 3.25x25 LPA6 receptor 5XSZ - -
TM3 124 3.26x26 LPA6 receptor 5XSZ S1P1 receptor 3V2Y
TM3 125 3.27x27 LPA6 receptor 5XSZ - -
TM3 126 3.28x28 LPA6 receptor 5XSZ - -
TM3 127 3.29x29 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM3 128 3.30x30 LPA6 receptor 5XSZ - -
TM3 129 3.31x31 LPA6 receptor 5XSZ CB1 receptor 5XRA
TM3 130 3.32x32 LPA6 receptor 5XSZ CXCR4 3ODU
TM3 131 3.33x33 LPA6 receptor 5XSZ PAF receptor 5ZKP
TM3 132 3.34x34 LPA6 receptor 5XSZ AT2 receptor 5UNG
TM3 133 3.35x35 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM3 134 3.36x36 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM3 135 3.37x37 LPA6 receptor 5XSZ - -
TM3 136 3.38x38 LPA6 receptor 5XSZ PAF receptor 5ZKP
TM3 137 3.39x39 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM3 138 3.40x40 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM3 139 3.41x41 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM3 140 3.42x42 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM3 141 3.43x43 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM3 142 3.44x44 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM3 143 3.45x45 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM3 144 3.46x46 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM3 145 3.47x47 LPA6 receptor 5XSZ CCR9 5LWE
TM3 146 3.48x48 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM3 147 3.49x49 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM3 148 3.50x50 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM3 149 3.51x51 LPA6 receptor 5XSZ κ receptor 6B73
TM3 150 3.52x52 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM3 151 3.53x53 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM3 152 3.54x54 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM3 153 3.55x55 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM3 154 3.56x56 LPA6 receptor 5XSZ CB1 receptor 5XRA
ICL2 155 34.50x50 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
ICL2 156 34.51x51 LPA6 receptor 5XSZ - -
ICL2 157 34.52x52 LPA6 receptor 5XSZ FFA1 receptor 5TZY
ICL2 158 34.53x53 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
ICL2 159 34.54x54 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
ICL2 160 34.55x55 LPA6 receptor 5XSZ Rhodopsin 4ZWJ
ICL2 161 34.56x56 LPA6 receptor 5XSZ - -
ICL2 162 34.57x57 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM4 163 4.38x38 LPA6 receptor 5XSZ - -
TM4 164 4.39x39 LPA6 receptor 5XSZ κ receptor 6B73
TM4 165 4.40x40 LPA6 receptor 5XSZ 5-HT2B receptor 5TUD
TM4 166 4.41x41 LPA6 receptor 5XSZ - -
TM4 167 4.42x42 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM4 168 4.43x43 LPA6 receptor 5XSZ β2-adrenoceptor 3SN6
TM4 169 4.44x44 LPA6 receptor 5XSZ NOP receptor 5DHG
TM4 170 4.45x45 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM4 171 4.46x46 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM4 172 4.47x47 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM4 173 4.48x48 LPA6 receptor 5XSZ US28 4XT1
TM4 174 4.49x49 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM4 175 4.50x50 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM4 176 4.51x51 LPA6 receptor 5XSZ κ receptor 6B73
TM4 177 4.52x52 LPA6 receptor 5XSZ NTS1 receptor 5T04
TM4 178 4.53x53 LPA6 receptor 5XSZ AT2 receptor 5UNG
TM4 179 4.54x54 LPA6 receptor 5XSZ β2-adrenoceptor 3SN6
TM4 180 4.55x55 LPA6 receptor 5XSZ μ receptor 5C1M
TM4 181 4.56x56 LPA6 receptor 5XSZ κ receptor 6B73
TM4 182 4.57x57 LPA6 receptor 5XSZ PAR2 5NDD
TM4 183 4.58x58 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM4 184 4.59x59 LPA6 receptor 5XSZ κ receptor 4DJH
TM4 185 4.60x60 LPA6 receptor 5XSZ μ receptor 5C1M
TM4 186 4.61x61 LPA6 receptor 5XSZ Rhodopsin 5DYS
TM4 187 4.62x62 LPA6 receptor 5XSZ FFA1 receptor 5TZY
ECL2 188 - - - -
ECL2 189 - - - -
ECL2 190 - - - -
ECL2 191 - - - -
ECL2 192 - - - -
ECL2 193 - - - -
ECL2 194 - - - -
ECL2 195 - - - -
TM5 196 5.38x39 LPA6 receptor 5XSZ - -
TM5 197 5.39x40 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM5 198 5.40x41 LPA6 receptor 5XSZ M2 receptor 4MQT
TM5 199 5.41x42 LPA6 receptor 5XSZ β2-adrenoceptor 3SN6
TM5 200 5.42x43 LPA6 receptor 5XSZ US28 4XT1
TM5 201 5.43x44 LPA6 receptor 5XSZ NTS1 receptor 5T04
TM5 202 5.44x45 LPA6 receptor 5XSZ Rhodopsin 5DYS
TM5 203 5.45x46 LPA6 receptor 5XSZ AT2 receptor 5UNG
TM5 204 5.46x461 LPA6 receptor 5XSZ - -
TM5 205 5.47x47 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM5 206 5.48x48 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM5 207 5.49x49 LPA6 receptor 5XSZ M2 receptor 4MQT
TM5 208 5.50x50 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM5 209 5.51x51 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM5 210 5.52x52 LPA6 receptor 5XSZ κ receptor 6B73
TM5 211 5.53x53 LPA6 receptor 5XSZ NTS1 receptor 5T04
TM5 212 5.54x54 LPA6 receptor 5XSZ κ receptor 6B73
TM5 213 5.55x55 LPA6 receptor 5XSZ NTS1 receptor 5T04
TM5 214 5.56x56 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM5 215 5.57x57 LPA6 receptor 5XSZ H1 receptor 3RZE
TM5 216 5.58x58 LPA6 receptor 5XSZ - -
TM5 217 5.59x59 LPA6 receptor 5XSZ μ receptor 5C1M
TM5 218 5.60x60 LPA6 receptor 5XSZ US28 4XT1
TM5 219 5.61x61 LPA6 receptor 5XSZ AT2 receptor 5UNG
TM5 220 5.62x62 LPA6 receptor 5XSZ - -
TM5 221 5.63x63 LPA6 receptor 5XSZ ETB receptor 5X93
TM5 222 5.64x64 LPA6 receptor 5XSZ 5-HT2B receptor 5TUD
TM5 223 5.65x65 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM5 224 5.66x66 LPA6 receptor 5XSZ PAR1 3VW7
TM5 225 5.67x67 LPA6 receptor 5XSZ FFA1 receptor 4PHU
TM5 226 5.68x68 κ receptor 4DJH - -
ICL3 227 - - - -
ICL3 228 AT2 receptor 5UNG - -
ICL3 229 - - - -
TM6 230 6.24x24 NOP receptor 5DHG - -
TM6 231 6.25x25 NOP receptor 5DHG 5-HT2B receptor 5TUD
TM6 232 6.26x26 NOP receptor 5DHG - -
TM6 233 6.27x27 NOP receptor 5DHG AT2 receptor 5UNG
TM6 234 6.28x28 NOP receptor 5DHG NTS1 receptor 5T04
TM6 235 6.29x29 LPA6 receptor 5XSZ - -
TM6 236 6.30x30 LPA6 receptor 5XSZ AT2 receptor 5UNG
TM6 237 6.31x31 LPA6 receptor 5XSZ A2A receptor 5G53
TM6 238 6.32x32 LPA6 receptor 5XSZ μ receptor 5C1M
TM6 239 6.33x33 LPA6 receptor 5XSZ 5-HT2B receptor 5TUD
TM6 240 6.34x34 LPA6 receptor 5XSZ - -
TM6 241 6.35x35 LPA6 receptor 5XSZ M3 receptor 4U15
TM6 242 6.36x36 LPA6 receptor 5XSZ κ receptor 6B73
TM6 243 6.37x37 LPA6 receptor 5XSZ NTS1 receptor 5T04
TM6 244 6.38x38 LPA6 receptor 5XSZ κ receptor 6B73
TM6 245 6.39x39 LPA6 receptor 5XSZ CCR9 5LWE
TM6 246 6.40x40 LPA6 receptor 5XSZ κ receptor 6B73
TM6 247 6.41x41 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM6 248 6.42x42 LPA6 receptor 5XSZ NTS1 receptor 5T04
TM6 249 6.43x43 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM6 250 6.44x44 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM6 251 6.45x45 LPA6 receptor 5XSZ Rhodopsin 5DYS
TM6 252 6.46x46 LPA6 receptor 5XSZ κ receptor 6B73
TM6 253 6.47x47 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM6 254 6.48x48 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM6 255 6.49x49 LPA6 receptor 5XSZ κ receptor 6B73
TM6 256 6.50x50 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM6 257 6.51x51 LPA6 receptor 5XSZ AT2 receptor 5UNG
TM6 258 6.52x52 LPA6 receptor 5XSZ κ receptor 6B73
TM6 259 6.53x53 LPA6 receptor 5XSZ CB1 receptor 5XRA
TM6 260 6.54x54 LPA6 receptor 5XSZ NTS1 receptor 5T04
TM6 261 6.55x55 LPA6 receptor 5XSZ PAF receptor 5ZKP
TM6 262 6.56x56 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM6 263 6.57x57 LPA6 receptor 5XSZ NOP receptor 5DHG
TM6 264 6.58x58 LPA6 receptor 5XSZ - -
TM6 265 6.59x59 LPA6 receptor 5XSZ κ receptor 6B73
TM6 266 6.60x60 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM6 267 6.61x61 LPA6 receptor 5XSZ - -
ECL3 268 - - - -
ECL3 269 NOP receptor 5DHG - -
ECL3 270 NOP receptor 5DHG - -
ECL3 271 - - - -
TM7 272 7.28x27 LPA6 receptor 5XSZ PAF receptor 5ZKP
TM7 273 7.29x28 LPA6 receptor 5XSZ - -
TM7 274 7.30x29 LPA6 receptor 5XSZ NOP receptor 5DHG
TM7 275 7.31x30 LPA6 receptor 5XSZ - -
TM7 276 7.32x31 LPA6 receptor 5XSZ κ receptor 6B73
TM7 277 7.33x32 LPA6 receptor 5XSZ μ receptor 5C1M
TM7 278 7.34x33 LPA6 receptor 5XSZ β2-adrenoceptor 3SN6
TM7 279 7.35x34 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM7 280 7.36x35 LPA6 receptor 5XSZ μ receptor 5C1M
TM7 281 7.37x36 LPA6 receptor 5XSZ PAF receptor 5ZKP
TM7 282 7.38x37 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM7 283 7.39x38 LPA6 receptor 5XSZ 5-HT2B receptor 5TUD
TM7 284 7.40x39 LPA6 receptor 5XSZ CCR5 5UIW
TM7 285 7.41x40 LPA6 receptor 5XSZ κ receptor 6B73
TM7 286 7.42x41 LPA6 receptor 5XSZ A2A receptor 5G53
TM7 287 7.43x42 LPA6 receptor 5XSZ PAF receptor 5ZKP
TM7 288 7.44x43 LPA6 receptor 5XSZ CB1 receptor 5XRA
TM7 289 7.45x45 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM7 290 7.46x46 LPA6 receptor 5XSZ κ receptor 6B73
TM7 291 7.47x47 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM7 292 7.48x48 LPA6 receptor 5XSZ A1 receptor 6D9H
TM7 293 7.49x49 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM7 294 7.50x50 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM7 295 7.51x51 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM7 296 7.52x52 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM7 297 7.53x53 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM7 298 7.54x54 LPA6 receptor 5XSZ AT2 receptor 5UNG
TM7 299 7.55x55 LPA6 receptor 5XSZ LPA6 receptor 5XSZ
TM7 300 7.56x56 LPA6 receptor 5XSZ AT2 receptor 5UNG
H8 301 8.47x47 κ receptor 4DJH - -
H8 302 8.48x48 κ receptor 4DJH - -
H8 303 8.49x49 κ receptor 4DJH - -
H8 304 8.50x50 κ receptor 4DJH κ receptor 4DJH
H8 305 8.51x51 κ receptor 4DJH AT2 receptor 5UNF
H8 306 8.52x52 κ receptor 4DJH NOP receptor 5DHG
H8 307 8.53x53 κ receptor 4DJH A2A receptor 5G53
H8 308 8.54x54 κ receptor 4DJH - -
H8 309 8.55x55 κ receptor 4DJH A2A receptor 5G53
H8 310 8.56x56 κ receptor 4DJH - -
H8 311 8.57x57 κ receptor 4DJH US28 4XT1
H8 312 8.58x58 κ receptor 4DJH PAF receptor 5ZKP
H8 313 8.59x59 κ receptor 4DJH - -
H8 314 8.60x60 CCR9 5LWE - -
H8 315 8.61x61 CCR9 5LWE A2A receptor 4UHR
C-term 316 - - - -
C-term 317 - - - -
C-term 318 - - - -
C-term 319 - - - -
C-term 320 - - - -