GPR34 homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Inactive (Δ distance (Å): -1.22 docs)

VERSION

2018-07-10

MAIN TEMPLATE

κ receptor (sequence similarity: 44%) PDB: 4DJH

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 78.3 13.6 8.1
Side-chains 20.4 51.5 28.2

Number of backbone templates: 7
Number of rotamer templates: 43

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5ZKQ
5ZKP
4DJH
6B73
4XNW
4N6H
4XES
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 44 - - - -
N-term 45 - - - -
N-term 46 - - - -
N-term 47 - - - -
N-term 48 - - - -
TM1 49 1.27x27 PAF receptor 5ZKQ - -
TM1 50 1.28x28 PAF receptor 5ZKQ M4 receptor 5DSG
TM1 51 1.29x29 PAF receptor 5ZKQ PAR2 5NDD
TM1 52 1.30x30 κ receptor 4DJH PAR2 5NDD
TM1 53 1.31x31 κ receptor 4DJH δ receptor 4N6H
TM1 54 1.32x32 κ receptor 4DJH CCR9 5LWE
TM1 55 1.33x33 κ receptor 4DJH PAF receptor 5ZKP
TM1 56 1.34x34 κ receptor 4DJH OX2 receptor 5WS3
TM1 57 1.35x35 κ receptor 4DJH CCR9 5LWE
TM1 58 1.36x36 κ receptor 4DJH κ receptor 4DJH
TM1 59 1.37x37 κ receptor 4DJH AT1 receptor 4ZUD
TM1 60 1.38x38 κ receptor 4DJH D3 receptor 3PBL
TM1 61 1.39x39 κ receptor 4DJH κ receptor 4DJH
TM1 62 1.40x40 κ receptor 4DJH κ receptor 4DJH
TM1 63 1.41x41 κ receptor 4DJH κ receptor 4DJH
TM1 64 1.42x42 κ receptor 4DJH AT1 receptor 4ZUD
TM1 65 1.43x43 κ receptor 4DJH κ receptor 4DJH
TM1 66 1.44x44 κ receptor 4DJH CCR9 5LWE
TM1 67 1.45x45 κ receptor 4DJH κ receptor 4DJH
TM1 68 1.46x46 κ receptor 4DJH κ receptor 4DJH
TM1 69 1.47x47 κ receptor 4DJH κ receptor 4DJH
TM1 70 1.48x48 κ receptor 4DJH κ receptor 4DJH
TM1 71 1.49x49 κ receptor 4DJH κ receptor 4DJH
TM1 72 1.50x50 κ receptor 4DJH κ receptor 4DJH
TM1 73 1.51x51 κ receptor 4DJH 5-HT2C receptor 6BQH
TM1 74 1.52x52 κ receptor 4DJH - -
TM1 75 1.53x53 κ receptor 4DJH P2Y1 receptor 4XNW
TM1 76 1.54x54 κ receptor 4DJH H1 receptor 3RZE
TM1 77 1.55x55 κ receptor 4DJH μ receptor 4DKL
TM1 78 1.56x56 κ receptor 4DJH κ receptor 4DJH
TM1 79 1.57x57 κ receptor 4DJH M3 receptor 4U15
TM1 80 1.58x58 κ receptor 4DJH BLT1 receptor 5X33
TM1 81 1.59x59 κ receptor 4DJH - -
TM1 82 1.60x60 κ receptor 4DJH P2Y12 receptor 4NTJ
TM1 83 1.61x61 PAF receptor 5ZKP - -
ICL1 84 - - - -
ICL1 85 - - - -
ICL1 86 - - - -
TM2 87 2.37x37 κ receptor 4DJH 5-HT2C receptor 6BQH
TM2 88 2.38x38 κ receptor 4DJH apelin receptor 5VBL
TM2 89 2.39x39 κ receptor 4DJH LPA1 receptor 4Z35
TM2 90 2.40x40 κ receptor 4DJH - -
TM2 91 2.41x41 κ receptor 4DJH κ receptor 4DJH
TM2 92 2.42x42 κ receptor 4DJH κ receptor 4DJH
TM2 93 2.43x43 κ receptor 4DJH CCR9 5LWE
TM2 94 2.44x44 κ receptor 4DJH CCR9 5LWE
TM2 95 2.45x45 κ receptor 4DJH κ receptor 4DJH
TM2 96 2.46x46 κ receptor 4DJH - -
TM2 97 2.47x47 κ receptor 4DJH κ receptor 4DJH
TM2 98 2.48x48 κ receptor 4DJH CCR9 5LWE
TM2 99 2.49x49 κ receptor 4DJH κ receptor 4DJH
TM2 100 2.50x50 κ receptor 4DJH κ receptor 4DJH
TM2 101 2.51x51 κ receptor 4DJH CCR9 5LWE
TM2 102 2.52x52 κ receptor 4DJH κ receptor 4DJH
TM2 103 2.53x53 κ receptor 4DJH D4 receptor 5WIV
TM2 104 2.54x54 κ receptor 4DJH ETB receptor 5X93
TM2 105 2.55x55 κ receptor 4DJH Rhodopsin 1GZM
TM2 106 2.56x56 κ receptor 4DJH OX2 receptor 5WS3
TM2 107 2.57x57 κ receptor 4DJH CCR9 5LWE
TM2 108 2.58x58 κ receptor 4DJH κ receptor 4DJH
TM2 109 2.59x59 κ receptor 4DJH κ receptor 4DJH
TM2 110 2.60x60 κ receptor 4DJH LPA6 receptor 5XSZ
TM2 111 2.61x61 κ receptor 4DJH H1 receptor 3RZE
TM2 112 2.62x62 κ receptor 4DJH 5-HT1B receptor 4IAQ
TM2 113 2.63x63 κ receptor 4DJH CCR5 5UIW
TM2 114 2.64x64 κ receptor 4DJH PAR2 5NDD
TM2 115 2.65x65 κ receptor 4DJH OX2 receptor 5WS3
TM2 116 2.66x66 κ receptor 4DJH CCR2 5T1A
TM2 117 2.67x67 PAF receptor 5ZKP PAF receptor 5ZKP
ECL1 118 - - - -
ECL1 119 23.49x49 PAF receptor 5ZKP H1 receptor 3RZE
ECL1 120 23.50x50 PAF receptor 5ZKP PAF receptor 5ZKP
ECL1 121 23.51x51 PAF receptor 5ZKP β2-adrenoceptor 5JQH
ECL1 122 23.52x52 - - - -
TM3 123 3.21x21 κ receptor 4DJH κ receptor 4DJH
TM3 124 3.22x22 κ receptor 4DJH LPA1 receptor 4Z35
TM3 125 3.23x23 κ receptor 4DJH μ receptor 4DKL
TM3 126 3.24x24 κ receptor 4DJH κ receptor 4DJH
TM3 127 3.25x25 κ receptor 4DJH κ receptor 4DJH
TM3 128 3.26x26 κ receptor 4DJH κ receptor 4DJH
TM3 129 3.27x27 κ receptor 4DJH CCR9 5LWE
TM3 130 3.28x28 κ receptor 4DJH κ receptor 4DJH
TM3 131 3.29x29 κ receptor 4DJH Rhodopsin 1GZM
TM3 132 3.30x30 κ receptor 4DJH D2 receptor 6CM4
TM3 133 3.31x31 κ receptor 4DJH CCR5 5UIW
TM3 134 3.32x32 κ receptor 4DJH PAF receptor 5ZKP
TM3 135 3.33x33 κ receptor 4DJH κ receptor 4DJH
TM3 136 3.34x34 κ receptor 4DJH CCR9 5LWE
TM3 137 3.35x35 κ receptor 4DJH κ receptor 4DJH
TM3 138 3.36x36 κ receptor 4DJH κ receptor 4DJH
TM3 139 3.37x37 κ receptor 4DJH CCR9 5LWE
TM3 140 3.38x38 κ receptor 4DJH ETB receptor 5X93
TM3 141 3.39x39 κ receptor 4DJH κ receptor 4DJH
TM3 142 3.40x40 κ receptor 4DJH κ receptor 4DJH
TM3 143 3.41x41 κ receptor 4DJH - -
TM3 144 3.42x42 κ receptor 4DJH CCR9 5LWE
TM3 145 3.43x43 κ receptor 4DJH κ receptor 4DJH
TM3 146 3.44x44 κ receptor 4DJH PAF receptor 5ZKP
TM3 147 3.45x45 κ receptor 4DJH CXCR4 3ODU
TM3 148 3.46x46 κ receptor 4DJH CCR9 5LWE
TM3 149 3.47x47 κ receptor 4DJH κ receptor 4DJH
TM3 150 3.48x48 κ receptor 4DJH CXCR4 3ODU
TM3 151 3.49x49 κ receptor 4DJH κ receptor 4DJH
TM3 152 3.50x50 κ receptor 4DJH κ receptor 4DJH
TM3 153 3.51x51 κ receptor 4DJH κ receptor 4DJH
TM3 154 3.52x52 κ receptor 4DJH κ receptor 4DJH
TM3 155 3.53x53 κ receptor 4DJH P2Y12 receptor 4NTJ
TM3 156 3.54x54 κ receptor 4DJH CCR9 5LWE
TM3 157 3.55x55 κ receptor 4DJH - -
TM3 158 3.56x56 κ receptor 4DJH apelin receptor 5VBL
ICL2 159 34.50x50 - - - -
ICL2 160 34.51x51 P2Y1 receptor 4XNW C5a1 receptor 6C1R
ICL2 161 34.52x52 P2Y1 receptor 4XNW - -
ICL2 162 34.53x53 P2Y1 receptor 4XNW - -
ICL2 163 34.54x54 P2Y1 receptor 4XNW M3 receptor 4U15
ICL2 164 34.55x55 P2Y1 receptor 4XNW BLT1 receptor 5X33
ICL2 165 34.56x56 P2Y1 receptor 4XNW CCR5 5UIW
ICL2 166 34.57x57 - - - -
TM4 167 4.38x38 κ receptor 4DJH κ receptor 4DJH
TM4 168 4.39x39 κ receptor 4DJH M3 receptor 4U15
TM4 169 4.40x40 κ receptor 4DJH OX2 receptor 5WS3
TM4 170 4.41x41 κ receptor 4DJH AT2 receptor 5UNG
TM4 171 4.42x42 κ receptor 4DJH CCR9 5LWE
TM4 172 4.43x43 κ receptor 4DJH 5-HT2C receptor 6BQH
TM4 173 4.44x44 κ receptor 4DJH AT2 receptor 5UNG
TM4 174 4.45x45 κ receptor 4DJH CCR9 5LWE
TM4 175 4.46x46 κ receptor 4DJH CCR9 5LWE
TM4 176 4.47x47 κ receptor 4DJH CB1 receptor 5TGZ
TM4 177 4.48x48 κ receptor 4DJH CCR5 5UIW
TM4 178 4.49x49 κ receptor 4DJH CXCR4 3ODU
TM4 179 4.50x50 κ receptor 4DJH κ receptor 4DJH
TM4 180 4.51x51 κ receptor 4DJH - -
TM4 181 4.52x52 κ receptor 4DJH κ receptor 4DJH
TM4 182 4.53x53 κ receptor 4DJH CCR9 5LWE
TM4 183 4.54x54 κ receptor 4DJH CXCR4 3ODU
TM4 184 4.55x55 κ receptor 4DJH δ receptor 4N6H
TM4 185 4.56x56 κ receptor 4DJH PAR1 3VW7
TM4 186 4.57x57 κ receptor 4DJH - -
TM4 187 4.58x58 κ receptor 4DJH μ receptor 4DKL
TM4 188 4.59x59 κ receptor 4DJH BLT1 receptor 5X33
TM4 189 4.60x60 κ receptor 4DJH - -
TM4 190 4.61x61 κ receptor 4DJH κ receptor 4DJH
TM4 191 4.62x62 κ receptor 4DJH CCR9 5LWE
TM4 192 4.63x63 κ receptor 4DJH κ receptor 4DJH
ECL2 193 κ receptor 4DJH - -
ECL2 194 κ receptor 4DJH - -
ECL2 195 κ receptor 4DJH - -
ECL2 196 κ receptor 4DJH - -
ECL2 197 κ receptor 4DJH - -
ECL2 198 κ receptor 4DJH - -
ECL2 199 κ receptor 4DJH - -
ECL2 200 κ receptor 4DJH - -
ECL2 201 κ receptor 4DJH - -
ECL2 202 κ receptor 4DJH - -
ECL2 203 κ receptor 4DJH - -
ECL2 204 45.50x50 κ receptor 4DJH κ receptor 4DJH
ECL2 205 45.51x51 κ receptor 4DJH Y1 receptor 5ZBH
ECL2 206 45.52x52 κ receptor 4DJH - -
ECL2 207 P2Y1 receptor 4XNW P2Y1 receptor 4XNW
ECL2 208 - - - -
ECL2 209 P2Y1 receptor 4XNW - -
ECL2 210 P2Y1 receptor 4XNW - -
ECL2 211 P2Y1 receptor 4XNW - -
ECL2 212 P2Y1 receptor 4XNW - -
TM5 213 5.33x33 κ receptor 4DJH AT2 receptor 5UNG
TM5 214 5.34x34 κ receptor 4DJH - -
TM5 215 5.35x35 κ receptor 4DJH - -
TM5 216 5.36x36 κ receptor 4DJH μ receptor 4DKL
TM5 217 5.37x37 κ receptor 4DJH BLT1 receptor 5X33
TM5 218 5.38x38 κ receptor 4DJH OX1 receptor 4ZJ8
TM5 219 5.39x39 κ receptor 4DJH CXCR4 3ODU
TM5 220 5.40x40 κ receptor 4DJH P2Y12 receptor 4NTJ
TM5 221 5.41x41 κ receptor 4DJH CXCR4 3ODU
TM5 222 5.42x42 κ receptor 4DJH 5-HT2C receptor 6BQH
TM5 223 5.43x43 κ receptor 4DJH ETB receptor 5X93
TM5 224 5.44x44 κ receptor 4DJH CCR5 5UIW
TM5 225 5.45x45 κ receptor 4DJH C5a1 receptor 5O9H
TM5 226 5.46x46 PAF receptor 5ZKP NTS1 receptor 4BUO
TM5 227 5.47x47 PAF receptor 5ZKP PAF receptor 5ZKP
TM5 228 5.48x48 κ receptor 4DJH P2Y12 receptor 4NTJ
TM5 229 5.49x49 κ receptor 4DJH CCR5 5UIW
TM5 230 5.50x50 κ receptor 4DJH - -
TM5 231 5.51x51 κ receptor 4DJH AT1 receptor 4ZUD
TM5 232 5.52x52 κ receptor 4DJH κ receptor 4DJH
TM5 233 5.53x53 κ receptor 4DJH OX2 receptor 5WS3
TM5 234 5.54x54 κ receptor 4DJH κ receptor 4DJH
TM5 235 5.55x55 κ receptor 4DJH κ receptor 4DJH
TM5 236 5.56x56 κ receptor 4DJH OX2 receptor 5WS3
TM5 237 5.57x57 κ receptor 4DJH AT1 receptor 4ZUD
TM5 238 5.58x58 κ receptor 4DJH κ receptor 4DJH
TM5 239 5.59x59 κ receptor 4DJH D2 receptor 6CM4
TM5 240 5.60x60 κ receptor 4DJH H1 receptor 3RZE
TM5 241 5.61x61 κ receptor 4DJH CCR5 5UIW
TM5 242 5.62x62 κ receptor 4DJH - -
TM5 243 5.63x63 κ receptor 4DJH CCR5 5UIW
TM5 244 5.64x64 κ receptor 4DJH - -
TM5 245 5.65x65 κ receptor 4DJH κ receptor 4DJH
TM5 246 5.66x66 κ receptor 4DJH CCR5 5UIW
TM5 247 5.67x67 κ receptor 4DJH CCR5 4MBS
TM5 248 5.68x68 κ receptor 4DJH - -
ICL3 249 - - - -
ICL3 250 δ receptor 4N6H - -
ICL3 251 δ receptor 4N6H - -
ICL3 252 δ receptor 4N6H - -
ICL3 253 - - - -
TM6 254 6.23x23 κ receptor 6B73 - -
TM6 255 6.24x24 κ receptor 6B73 - -
TM6 256 6.25x25 κ receptor 6B73 - -
TM6 257 6.26x26 κ receptor 6B73 LPA1 receptor 4Z35
TM6 258 6.27x27 κ receptor 6B73 Y1 receptor 5ZBH
TM6 259 6.28x28 κ receptor 4DJH A1 receptor 5N2S
TM6 260 6.29x29 κ receptor 4DJH β2-adrenoceptor 2RH1
TM6 261 6.30x30 κ receptor 4DJH - -
TM6 262 6.31x31 κ receptor 4DJH - -
TM6 263 6.32x32 κ receptor 4DJH - -
TM6 264 6.33x33 κ receptor 4DJH OX2 receptor 5WS3
TM6 265 6.34x34 κ receptor 4DJH OX2 receptor 5WS3
TM6 266 6.35x35 κ receptor 4DJH κ receptor 4DJH
TM6 267 6.36x36 κ receptor 4DJH - -
TM6 268 6.37x37 κ receptor 4DJH - -
TM6 269 6.38x38 κ receptor 4DJH CCR5 5UIW
TM6 270 6.39x39 κ receptor 4DJH CXCR4 3ODU
TM6 271 6.40x40 κ receptor 4DJH κ receptor 4DJH
TM6 272 6.41x41 κ receptor 4DJH CCR9 5LWE
TM6 273 6.42x42 κ receptor 4DJH CCR5 5UIW
TM6 274 6.43x43 κ receptor 4DJH LPA6 receptor 5XSZ
TM6 275 6.44x44 κ receptor 4DJH κ receptor 4DJH
TM6 276 6.45x45 κ receptor 4DJH β2-adrenoceptor 5JQH
TM6 277 6.46x46 κ receptor 4DJH OX2 receptor 5WS3
TM6 278 6.47x47 κ receptor 4DJH κ receptor 4DJH
TM6 279 6.48x48 κ receptor 4DJH PAF receptor 5ZKP
TM6 280 6.49x49 κ receptor 4DJH PAF receptor 5ZKP
TM6 281 6.50x50 κ receptor 4DJH κ receptor 4DJH
TM6 282 6.51x51 κ receptor 4DJH CCR9 5LWE
TM6 283 6.52x52 κ receptor 4DJH κ receptor 4DJH
TM6 284 6.53x53 κ receptor 4DJH CB1 receptor 5TGZ
TM6 285 6.54x54 κ receptor 4DJH κ receptor 4DJH
TM6 286 6.55x55 κ receptor 4DJH ETB receptor 5X93
TM6 287 6.56x56 κ receptor 4DJH AT1 receptor 4ZUD
TM6 288 6.57x57 κ receptor 4DJH CXCR4 3ODU
TM6 289 6.58x58 κ receptor 4DJH apelin receptor 5VBL
TM6 290 6.59x59 κ receptor 4DJH D2 receptor 6CM4
TM6 291 6.60x60 κ receptor 4DJH BLT1 receptor 5X33
TM6 292 6.61x61 κ receptor 4DJH - -
ECL3 293 - - - -
ECL3 294 NTS1 receptor 4XES - -
ECL3 295 NTS1 receptor 4XES - -
ECL3 296 NTS1 receptor 4XES - -
ECL3 297 - - - -
TM7 298 7.24x23 PAF receptor 5ZKP AT2 receptor 5UNG
TM7 299 7.25x24 PAF receptor 5ZKP CCR9 5LWE
TM7 300 7.26x25 PAF receptor 5ZKP - -
TM7 301 7.27x26 PAF receptor 5ZKP - -
TM7 302 7.28x27 PAF receptor 5ZKP - -
TM7 303 7.29x28 PAF receptor 5ZKP OX2 receptor 5WS3
TM7 304 7.30x29 PAF receptor 5ZKP AT1 receptor 4ZUD
TM7 305 7.31x30 κ receptor 4DJH δ receptor 4N6H
TM7 306 7.32x31 κ receptor 4DJH CXCR4 3ODU
TM7 307 7.33x32 κ receptor 4DJH CXCR4 3ODU
TM7 308 7.34x33 κ receptor 4DJH P2Y1 receptor 4XNW
TM7 309 7.35x34 κ receptor 4DJH - -
TM7 310 7.36x35 κ receptor 4DJH M1 receptor 5CXV
TM7 311 7.37x36 κ receptor 4DJH AT1 receptor 4ZUD
TM7 312 7.38x37 κ receptor 4DJH - -
TM7 313 7.39x38 κ receptor 4DJH S1P1 receptor 3V2Y
TM7 314 7.40x39 κ receptor 4DJH A2A receptor 3VG9
TM7 315 7.41x40 κ receptor 4DJH κ receptor 4DJH
TM7 316 7.42x41 κ receptor 4DJH apelin receptor 5VBL
TM7 317 7.43x42 κ receptor 4DJH ETB receptor 5X93
TM7 318 7.44x43 κ receptor 4DJH CCR9 5LWE
TM7 319 7.45x45 κ receptor 4DJH κ receptor 4DJH
TM7 320 7.46x46 κ receptor 4DJH κ receptor 4DJH
TM7 321 7.47x47 κ receptor 4DJH CCR9 5LWE
TM7 322 7.48x48 κ receptor 4DJH κ receptor 4DJH
TM7 323 7.49x49 κ receptor 4DJH PAR1 3VW7
TM7 324 7.50x50 κ receptor 4DJH κ receptor 4DJH
TM7 325 7.51x51 κ receptor 4DJH CCR9 5LWE
TM7 326 7.52x52 κ receptor 4DJH - -
TM7 327 7.53x53 κ receptor 4DJH κ receptor 4DJH
TM7 328 7.54x54 κ receptor 4DJH P2Y1 receptor 4XNW
TM7 329 7.55x55 κ receptor 4DJH H1 receptor 3RZE
TM7 330 7.56x56 κ receptor 4DJH Rhodopsin 1GZM
TM7 331 7.57x57 PAF receptor 5ZKP - -
TM7 332 7.58x58 PAF receptor 5ZKP - -
TM7 333 7.59x59 PAF receptor 5ZKP - -
H8 334 8.50x50 κ receptor 4DJH - -
H8 335 8.51x51 κ receptor 4DJH CCR9 5LWE
H8 336 8.52x52 κ receptor 4DJH H1 receptor 3RZE
H8 337 8.53x53 κ receptor 4DJH - -
H8 338 8.54x54 κ receptor 4DJH Rhodopsin 1GZM
H8 339 8.55x55 κ receptor 4DJH - -
H8 340 8.56x56 κ receptor 4DJH LPA1 receptor 4Z36
H8 341 8.57x57 κ receptor 4DJH δ receptor 4N6H
H8 342 8.58x58 κ receptor 4DJH CCR9 5LWE
H8 343 8.59x59 κ receptor 4DJH κ receptor 4DJH
H8 344 8.60x60 - - - -
H8 345 8.61x61 - - - -
H8 346 8.62x62 - - - -
H8 347 8.63x63 - - - -
C-term 348 κ receptor 4DJH κ receptor 4DJH
C-term 349 - - - -
C-term 350 - - - -
C-term 351 - - - -
C-term 352 - - - -