GPR82 homology model

PROTEIN CLASS

Class A (Rhodopsin)

RECEPTOR

SPECIES

Homo sapiens

STATE

Inactive (Δ distance (Å): -1.51 docs)

VERSION

2018-07-10

MAIN TEMPLATE

δ receptor (sequence similarity: 41%) PDB: 4N6H

TEMPLATES

Main template (%) Additional templates (%) No template - freely modelled (%)
Backbone 81.3 3.9 14.8
Side-chains 19.6 46.2 34.1

Number of backbone templates: 7
Number of rotamer templates: 42

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4N6H
5O9H
5NDD
4ZUD
4DJH
3VW7
4ZJ8
None

PDB file contains GPCRdb generic numbers in the B-factor field of CA atoms

Segment Seq.num. GPCRdb# Backbone PDB Rotamer PDB
N-term 1 - - - -
N-term 2 δ receptor 4N6H δ receptor 4N6H
N-term 3 δ receptor 4N6H δ receptor 4N6H
N-term 4 δ receptor 4N6H δ receptor 4N6H
TM1 5 1.22x22 δ receptor 4N6H - -
TM1 6 1.23x23 δ receptor 4N6H - -
TM1 7 1.24x24 δ receptor 4N6H - -
TM1 8 1.25x25 δ receptor 4N6H ETB receptor 5X93
TM1 9 1.26x26 δ receptor 4N6H β2-adrenoceptor 3P0G
TM1 10 1.27x27 δ receptor 4N6H - -
TM1 11 1.28x28 δ receptor 4N6H δ receptor 4N6H
TM1 12 1.29x29 δ receptor 4N6H μ receptor 5C1M
TM1 13 1.30x30 δ receptor 4N6H CCR5 5UIW
TM1 14 1.31x31 δ receptor 4N6H NTS1 receptor 4BUO
TM1 15 1.32x32 δ receptor 4N6H CCR9 5LWE
TM1 16 1.33x33 δ receptor 4N6H - -
TM1 17 1.34x34 δ receptor 4N6H δ receptor 4N6H
TM1 18 1.35x35 δ receptor 4N6H CXCR4 3ODU
TM1 19 1.36x36 δ receptor 4N6H AT1 receptor 4ZUD
TM1 20 1.37x37 δ receptor 4N6H β2-adrenoceptor 5JQH
TM1 21 1.38x38 δ receptor 4N6H CXCR4 3ODU
TM1 22 1.39x39 δ receptor 4N6H δ receptor 4N6H
TM1 23 1.40x40 δ receptor 4N6H OX2 receptor 5WS3
TM1 24 1.41x41 δ receptor 4N6H apelin receptor 5VBL
TM1 25 1.42x42 δ receptor 4N6H NTS1 receptor 4BUO
TM1 26 1.43x43 δ receptor 4N6H δ receptor 4N6H
TM1 27 1.44x44 δ receptor 4N6H CCR9 5LWE
TM1 28 1.45x45 δ receptor 4N6H δ receptor 4N6H
TM1 29 1.46x46 δ receptor 4N6H δ receptor 4N6H
TM1 30 1.47x47 δ receptor 4N6H C5a1 receptor 5O9H
TM1 31 1.48x48 δ receptor 4N6H μ receptor 4DKL
TM1 32 1.49x49 δ receptor 4N6H δ receptor 4N6H
TM1 33 1.50x50 δ receptor 4N6H δ receptor 4N6H
TM1 34 1.51x51 δ receptor 4N6H OX1 receptor 4ZJ8
TM1 35 1.52x52 δ receptor 4N6H δ receptor 4N6H
TM1 36 1.53x53 δ receptor 4N6H - -
TM1 37 1.54x54 δ receptor 4N6H - -
TM1 38 1.55x55 δ receptor 4N6H C5a1 receptor 5O9H
TM1 39 1.56x56 δ receptor 4N6H ETB receptor 5X93
TM1 40 1.57x57 δ receptor 4N6H M3 receptor 4U15
TM1 41 1.58x58 δ receptor 4N6H NOP receptor 5DHG
TM1 42 1.59x59 δ receptor 4N6H D4 receptor 5WIV
TM1 43 1.60x60 δ receptor 4N6H - -
ICL1 44 δ receptor 4N6H - -
ICL1 45 δ receptor 4N6H - -
ICL1 46 δ receptor 4N6H - -
ICL1 47 δ receptor 4N6H δ receptor 4N6H
TM2 48 2.37x37 δ receptor 4N6H δ receptor 4N6H
TM2 49 2.38x38 δ receptor 4N6H apelin receptor 5VBL
TM2 50 2.39x39 δ receptor 4N6H δ receptor 4N6H
TM2 51 2.40x40 δ receptor 4N6H NTS1 receptor 4XES
TM2 52 2.41x41 δ receptor 4N6H δ receptor 4N6H
TM2 53 2.42x42 δ receptor 4N6H δ receptor 4N6H
TM2 54 2.43x43 δ receptor 4N6H AT1 receptor 4ZUD
TM2 55 2.44x44 δ receptor 4N6H - -
TM2 56 2.45x45 δ receptor 4N6H CXCR4 3ODU
TM2 57 2.46x46 δ receptor 4N6H δ receptor 4N6H
TM2 58 2.47x47 δ receptor 4N6H P2Y12 receptor 4NTJ
TM2 59 2.48x48 δ receptor 4N6H PAR1 3VW7
TM2 60 2.49x49 δ receptor 4N6H δ receptor 4N6H
TM2 61 2.50x50 δ receptor 4N6H A2A receptor 5WF5
TM2 62 2.51x51 δ receptor 4N6H AT1 receptor 4ZUD
TM2 63 2.52x52 δ receptor 4N6H δ receptor 4N6H
TM2 64 2.53x53 δ receptor 4N6H κ receptor 4DJH
TM2 65 2.54x54 δ receptor 4N6H C5a1 receptor 5O9H
TM2 66 2.55x55 δ receptor 4N6H δ receptor 4N6H
TM2 67 2.56x56 δ receptor 4N6H C5a1 receptor 5O9H
TM2 68 2.57x57 δ receptor 4N6H κ receptor 4DJH
TM2 69 2.58x58 δ receptor 4N6H δ receptor 4N6H
TM2 70 2.59x59 δ receptor 4N6H δ receptor 4N6H
TM2 71 2.60x60 δ receptor 4N6H - -
TM2 72 2.61x61 δ receptor 4N6H δ receptor 4N6H
TM2 73 2.62x62 δ receptor 4N6H CCR9 5LWE
TM2 74 2.63x63 δ receptor 4N6H AT1 receptor 4ZUD
TM2 75 2.64x64 δ receptor 4N6H NTS1 receptor 4BUO
TM2 76 2.65x65 δ receptor 4N6H δ receptor 4N6H
TM2 77 2.66x66 δ receptor 4N6H M4 receptor 5DSG
TM2 78 2.67x67 C5a1 receptor 5O9H BLT1 receptor 5X33
ECL1 79 - - - -
ECL1 80 23.49x49 - - - -
ECL1 81 23.50x50 - - - -
ECL1 82 23.51x51 - - - -
ECL1 83 23.52x52 - - - -
TM3 84 3.17x17 - - - -
TM3 85 3.18x18 - - - -
TM3 86 3.19x19 - - - -
TM3 87 3.20x20 - - - -
TM3 88 3.21x21 δ receptor 4N6H - -
TM3 89 3.22x22 δ receptor 4N6H 5-HT2C receptor 6BQH
TM3 90 3.23x23 δ receptor 4N6H κ receptor 4DJH
TM3 91 3.24x24 δ receptor 4N6H CB1 receptor 5TGZ
TM3 92 3.25x25 δ receptor 4N6H - -
TM3 93 3.26x26 δ receptor 4N6H S1P1 receptor 3V2Y
TM3 94 3.27x27 δ receptor 4N6H apelin receptor 5VBL
TM3 95 3.28x28 δ receptor 4N6H - -
TM3 96 3.29x29 δ receptor 4N6H CCR5 5UIW
TM3 97 3.30x30 δ receptor 4N6H - -
TM3 98 3.31x31 δ receptor 4N6H AT1 receptor 4ZUD
TM3 99 3.32x32 δ receptor 4N6H S1P1 receptor 3V2Y
TM3 100 3.33x33 δ receptor 4N6H CCR2 5T1A
TM3 101 3.34x34 δ receptor 4N6H NTS1 receptor 4BUO
TM3 102 3.35x35 δ receptor 4N6H OX1 receptor 4ZJ8
TM3 103 3.36x36 δ receptor 4N6H δ receptor 4N6H
TM3 104 3.37x37 δ receptor 4N6H δ receptor 4N6H
TM3 105 3.38x38 δ receptor 4N6H OX1 receptor 4ZJ8
TM3 106 3.39x39 δ receptor 4N6H δ receptor 4N6H
TM3 107 3.40x40 δ receptor 4N6H Rhodopsin 1GZM
TM3 108 3.41x41 δ receptor 4N6H C5a1 receptor 5O9H
TM3 109 3.42x42 δ receptor 4N6H CXCR4 3ODU
TM3 110 3.43x43 δ receptor 4N6H δ receptor 4N6H
TM3 111 3.44x44 δ receptor 4N6H OX1 receptor 4ZJ8
TM3 112 3.45x45 δ receptor 4N6H - -
TM3 113 3.46x46 δ receptor 4N6H CXCR4 3ODU
TM3 114 3.47x47 δ receptor 4N6H OX1 receptor 4ZJ8
TM3 115 3.48x48 δ receptor 4N6H AT1 receptor 4ZUD
TM3 116 3.49x49 δ receptor 4N6H - -
TM3 117 3.50x50 δ receptor 4N6H δ receptor 4N6H
TM3 118 3.51x51 δ receptor 4N6H δ receptor 4N6H
TM3 119 3.52x52 δ receptor 4N6H - -
TM3 120 3.53x53 δ receptor 4N6H S1P1 receptor 3V2Y
TM3 121 3.54x54 δ receptor 4N6H - -
TM3 122 3.55x55 δ receptor 4N6H - -
TM3 123 3.56x56 δ receptor 4N6H CCR9 5LWE
ICL2 124 - - - -
ICL2 125 - - - -
ICL2 126 - - - -
ICL2 127 - - - -
ICL2 128 - - - -
ICL2 129 - - - -
ICL2 130 - - - -
ICL2 131 - - - -
ICL2 132 - - - -
ICL2 133 - - - -
ICL2 134 - - - -
ICL2 135 - - - -
ICL2 136 - - - -
ICL2 137 - - - -
ICL2 138 - - - -
ICL2 139 - - - -
ICL2 140 34.50x50 δ receptor 4N6H - -
ICL2 141 34.51x51 δ receptor 4N6H - -
ICL2 142 34.52x52 δ receptor 4N6H OX1 receptor 4ZJ8
ICL2 143 34.53x53 δ receptor 4N6H - -
ICL2 144 34.54x54 δ receptor 4N6H CB1 receptor 5TGZ
ICL2 145 34.55x55 δ receptor 4N6H BLT1 receptor 5X33
ICL2 146 34.56x56 δ receptor 4N6H δ receptor 4N6H
ICL2 147 34.57x57 δ receptor 4N6H δ receptor 4N6H
TM4 148 4.38x38 δ receptor 4N6H - -
TM4 149 4.39x39 δ receptor 4N6H δ receptor 4N6H
TM4 150 4.40x40 δ receptor 4N6H β2-adrenoceptor 5JQH
TM4 151 4.41x41 δ receptor 4N6H CCR5 5UIW
TM4 152 4.42x42 δ receptor 4N6H δ receptor 4N6H
TM4 153 4.43x43 δ receptor 4N6H OX2 receptor 5WS3
TM4 154 4.44x44 δ receptor 4N6H NTS1 receptor 4BUO
TM4 155 4.45x45 δ receptor 4N6H C5a1 receptor 5O9H
TM4 156 4.46x46 δ receptor 4N6H AT1 receptor 4ZUD
TM4 157 4.47x47 δ receptor 4N6H δ receptor 4N6H
TM4 158 4.48x48 δ receptor 4N6H - -
TM4 159 4.49x49 δ receptor 4N6H δ receptor 4N6H
TM4 160 4.50x50 δ receptor 4N6H δ receptor 4N6H
TM4 161 4.51x51 δ receptor 4N6H C5a1 receptor 5O9H
TM4 162 4.52x52 δ receptor 4N6H OX1 receptor 4ZJ8
TM4 163 4.53x53 δ receptor 4N6H P2Y1 receptor 4XNW
TM4 164 4.54x54 δ receptor 4N6H CXCR4 3ODU
TM4 165 4.55x55 δ receptor 4N6H δ receptor 4N6H
TM4 166 4.56x56 δ receptor 4N6H μ receptor 4DKL
TM4 167 4.57x57 PAR2 5NDD P2Y1 receptor 4XNW
TM4 168 4.58x59 PAR2 5NDD CXCR4 3ODU
TM4 169 4.59x60 δ receptor 4N6H AT1 receptor 4ZUD
TM4 170 4.60x61 δ receptor 4N6H apelin receptor 5VBL
TM4 171 4.61x62 δ receptor 4N6H - -
TM4 172 4.62x63 δ receptor 4N6H apelin receptor 5VBL
TM4 173 4.63x64 δ receptor 4N6H - -
TM4 174 4.64x65 AT1 receptor 4ZUD - -
ECL2 175 - - - -
ECL2 176 - - - -
ECL2 177 - - - -
ECL2 178 - - - -
ECL2 179 - - - -
ECL2 180 - - - -
ECL2 181 - - - -
ECL2 182 - - - -
ECL2 183 - - - -
ECL2 184 - - - -
ECL2 185 - - - -
ECL2 186 - - - -
ECL2 187 - - - -
ECL2 188 - - - -
ECL2 189 - - - -
ECL2 190 - - - -
ECL2 191 - - - -
ECL2 192 - - - -
ECL2 193 - - - -
TM5 194 5.31x31 κ receptor 4DJH - -
TM5 195 5.32x32 δ receptor 4N6H P2Y12 receptor 4NTJ
TM5 196 5.33x33 δ receptor 4N6H AT2 receptor 5UNG
TM5 197 5.34x34 δ receptor 4N6H - -
TM5 198 5.35x35 δ receptor 4N6H - -
TM5 199 5.36x36 δ receptor 4N6H AT2 receptor 5UNG
TM5 200 5.37x37 δ receptor 4N6H β2-adrenoceptor 5JQH
TM5 201 5.38x38 δ receptor 4N6H OX1 receptor 4ZJ8
TM5 202 5.39x39 δ receptor 4N6H FFA1 receptor 5TZY
TM5 203 5.40x40 δ receptor 4N6H AT1 receptor 4ZUD
TM5 204 5.41x41 δ receptor 4N6H AT1 receptor 4ZUD
TM5 205 5.42x42 δ receptor 4N6H 5-HT2C receptor 6BQH
TM5 206 5.43x43 δ receptor 4N6H 5-HT2C receptor 6BQH
TM5 207 5.44x44 δ receptor 4N6H apelin receptor 5VBL
TM5 208 5.45x45 δ receptor 4N6H apelin receptor 5VBL
TM5 209 5.46x46 PAR1 3VW7 PAR1 3VW7
TM5 210 5.47x47 PAR1 3VW7 - -
TM5 211 5.48x48 δ receptor 4N6H - -
TM5 212 5.49x49 δ receptor 4N6H NTS1 receptor 4BUO
TM5 213 5.50x50 δ receptor 4N6H - -
TM5 214 5.51x51 δ receptor 4N6H AT1 receptor 4ZUD
TM5 215 5.52x52 δ receptor 4N6H δ receptor 4N6H
TM5 216 5.53x53 δ receptor 4N6H CXCR4 3ODU
TM5 217 5.54x54 δ receptor 4N6H BLT1 receptor 5X33
TM5 218 5.55x55 δ receptor 4N6H AT1 receptor 4ZUD
TM5 219 5.56x56 δ receptor 4N6H AT1 receptor 4ZUD
TM5 220 5.57x57 δ receptor 4N6H AT1 receptor 4ZUD
TM5 221 5.58x58 δ receptor 4N6H δ receptor 4N6H
TM5 222 5.59x59 δ receptor 4N6H US28 4XT1
TM5 223 5.60x60 δ receptor 4N6H PAR1 3VW7
TM5 224 5.61x61 δ receptor 4N6H - -
TM5 225 5.62x62 δ receptor 4N6H Rhodopsin 1GZM
TM5 226 5.63x63 δ receptor 4N6H CXCR4 3ODU
TM5 227 5.64x64 δ receptor 4N6H AT2 receptor 5UNG
TM5 228 5.65x65 δ receptor 4N6H δ receptor 4N6H
TM5 229 5.66x66 δ receptor 4N6H δ receptor 4N6H
TM5 230 5.67x67 δ receptor 4N6H A1 receptor 5UEN
TM5 231 5.68x68 δ receptor 4N6H - -
ICL3 232 δ receptor 4N6H δ receptor 4N6H
ICL3 233 δ receptor 4N6H - -
ICL3 234 δ receptor 4N6H - -
ICL3 235 δ receptor 4N6H - -
ICL3 236 δ receptor 4N6H - -
TM6 237 6.23x23 δ receptor 4N6H - -
TM6 238 6.24x24 δ receptor 4N6H - -
TM6 239 6.25x25 δ receptor 4N6H NOP receptor 5DHG
TM6 240 6.26x26 δ receptor 4N6H NOP receptor 5DHG
TM6 241 6.27x27 δ receptor 4N6H δ receptor 4N6H
TM6 242 6.28x28 δ receptor 4N6H β2-adrenoceptor 3SN6
TM6 243 6.29x29 δ receptor 4N6H LPA1 receptor 4Z35
TM6 244 6.30x30 δ receptor 4N6H - -
TM6 245 6.31x31 δ receptor 4N6H - -
TM6 246 6.32x32 δ receptor 4N6H LPA1 receptor 4Z35
TM6 247 6.33x33 δ receptor 4N6H ETB receptor 5X93
TM6 248 6.34x34 δ receptor 4N6H - -
TM6 249 6.35x35 δ receptor 4N6H δ receptor 4N6H
TM6 250 6.36x36 δ receptor 4N6H - -
TM6 251 6.37x37 δ receptor 4N6H OX1 receptor 4ZJ8
TM6 252 6.38x38 δ receptor 4N6H δ receptor 4N6H
TM6 253 6.39x39 δ receptor 4N6H δ receptor 4N6H
TM6 254 6.40x40 δ receptor 4N6H AT1 receptor 4ZUD
TM6 255 6.41x41 δ receptor 4N6H - -
TM6 256 6.42x42 δ receptor 4N6H NTS1 receptor 4BUO
TM6 257 6.43x43 δ receptor 4N6H A1 receptor 5UEN
TM6 258 6.44x44 δ receptor 4N6H CB1 receptor 5TGZ
TM6 259 6.45x45 δ receptor 4N6H μ receptor 4DKL
TM6 260 6.46x46 δ receptor 4N6H δ receptor 4N6H
TM6 261 6.47x47 δ receptor 4N6H δ receptor 4N6H
TM6 262 6.48x48 δ receptor 4N6H PAR2 5NDD
TM6 263 6.49x49 δ receptor 4N6H CXCR4 3ODU
TM6 264 6.50x50 δ receptor 4N6H δ receptor 4N6H
TM6 265 6.51x51 δ receptor 4N6H CXCR4 3ODU
TM6 266 6.52x52 δ receptor 4N6H OX1 receptor 4ZJ8
TM6 267 6.53x53 δ receptor 4N6H δ receptor 4N6H
TM6 268 6.54x54 δ receptor 4N6H δ receptor 4N6H
TM6 269 6.55x55 δ receptor 4N6H apelin receptor 5VBL
TM6 270 6.56x56 δ receptor 4N6H - -
TM6 271 6.57x57 δ receptor 4N6H μ receptor 4DKL
TM6 272 6.58x58 δ receptor 4N6H NTS1 receptor 4BUO
TM6 273 6.59x59 δ receptor 4N6H PAR2 5NDD
TM6 274 6.60x60 δ receptor 4N6H OX1 receptor 4ZJ8
TM6 275 6.61x61 δ receptor 4N6H C5a1 receptor 5O9H
ECL3 276 - - - -
ECL3 277 OX1 receptor 4ZJ8 - -
ECL3 278 OX1 receptor 4ZJ8 - -
ECL3 279 OX1 receptor 4ZJ8 - -
ECL3 280 OX1 receptor 4ZJ8 - -
ECL3 281 OX1 receptor 4ZJ8 - -
ECL3 282 OX1 receptor 4ZJ8 - -
ECL3 283 - - - -
TM7 284 7.28x27 δ receptor 4N6H - -
TM7 285 7.29x28 δ receptor 4N6H CXCR4 3ODU
TM7 286 7.30x29 δ receptor 4N6H - -
TM7 287 7.31x30 δ receptor 4N6H C5a1 receptor 5O9H
TM7 288 7.32x31 δ receptor 4N6H - -
TM7 289 7.33x32 δ receptor 4N6H β2-adrenoceptor 2RH1
TM7 290 7.34x33 δ receptor 4N6H P2Y1 receptor 4XNW
TM7 291 7.35x34 δ receptor 4N6H P2Y12 receptor 4NTJ
TM7 292 7.36x35 δ receptor 4N6H 5-HT2C receptor 6BQH
TM7 293 7.37x36 δ receptor 4N6H AT1 receptor 4ZUD
TM7 294 7.38x37 δ receptor 4N6H β2-adrenoceptor 5JQH
TM7 295 7.39x38 δ receptor 4N6H NOP receptor 5DHG
TM7 296 7.40x39 δ receptor 4N6H AT1 receptor 4ZUD
TM7 297 7.41x40 δ receptor 4N6H δ receptor 4N6H
TM7 298 7.42x41 δ receptor 4N6H AT1 receptor 4ZUD
TM7 299 7.43x42 δ receptor 4N6H ETB receptor 5X93
TM7 300 7.44x43 δ receptor 4N6H δ receptor 4N6H
TM7 301 7.45x45 δ receptor 4N6H - -
TM7 302 7.46x46 δ receptor 4N6H δ receptor 4N6H
TM7 303 7.47x47 δ receptor 4N6H δ receptor 4N6H
TM7 304 7.48x48 δ receptor 4N6H S1P1 receptor 3V2Y
TM7 305 7.49x49 δ receptor 4N6H PAR2 5NDD
TM7 306 7.50x50 δ receptor 4N6H δ receptor 4N6H
TM7 307 7.51x51 δ receptor 4N6H κ receptor 4DJH
TM7 308 7.52x52 δ receptor 4N6H C5a1 receptor 5O9H
TM7 309 7.53x53 δ receptor 4N6H - -
TM7 310 7.54x54 δ receptor 4N6H - -
TM7 311 7.55x55 δ receptor 4N6H 5-HT2C receptor 6BQH
TM7 312 7.56x56 δ receptor 4N6H δ receptor 4N6H
H8 313 8.47x47 δ receptor 4N6H δ receptor 4N6H
H8 314 8.48x48 δ receptor 4N6H 5-HT2C receptor 6BQH
H8 315 8.49x49 δ receptor 4N6H M4 receptor 5DSG
H8 316 8.50x50 δ receptor 4N6H δ receptor 4N6H
H8 317 8.51x51 δ receptor 4N6H δ receptor 4EJ4
H8 318 8.52x52 δ receptor 4N6H H1 receptor 3RZE
H8 319 8.53x53 δ receptor 4N6H H1 receptor 3RZE
H8 320 8.54x54 δ receptor 4N6H CCR9 5LWE
H8 321 8.55x55 δ receptor 4N6H - -
H8 322 8.56x56 δ receptor 4N6H 5-HT2C receptor 6BQH
H8 323 8.57x57 δ receptor 4N6H δ receptor 4N6H
H8 324 8.58x58 δ receptor 4N6H OX1 receptor 4ZJ8
H8 325 8.59x59 δ receptor 4N6H 5-HT2B receptor 5TUD
H8 326 8.60x60 δ receptor 4N6H - -
C-term 327 δ receptor 4N6H δ receptor 4N6H
C-term 328 δ receptor 4N6H δ receptor 4N6H
C-term 329 δ receptor 4N6H δ receptor 4N6H
C-term 330 - - - -
C-term 331 - - - -