Structure information

β1-adrenoceptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

2YCY

SPECIES

Meleagris gallopavo

RESOLUTION

3.150

PREFERRED CHAIN

A

REFERENCE

10.1073/PNAS.1100185108

PUBLICATION DATE

June 8, 2011

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file

Ligand Interaction Browser

Download list in excel
Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
(S)-Cyanopindolol W117 3.28x28 TM3 hydrophobic
(S)-Cyanopindolol D121 3.32x32 TM3 polar (charge-assisted hydrogen bond)
(S)-Cyanopindolol V122 3.33x33 TM3 Van der Waals
(S)-Cyanopindolol V122 3.33x33 TM3 hydrophobic
(S)-Cyanopindolol F201 45.52x52 ECL2 hydrophobic
(S)-Cyanopindolol F201 45.52x52 ECL2 Van der Waals
(S)-Cyanopindolol Y207 5.38x39 TM5 Van der Waals
(S)-Cyanopindolol A208 5.39x40 TM5 Van der Waals
(S)-Cyanopindolol S211 5.42x43 TM5 polar (hydrogen bond)
(S)-Cyanopindolol S212 5.43x44 TM5 Van der Waals
(S)-Cyanopindolol S215 5.46x461 TM5 Van der Waals
(S)-Cyanopindolol W303 6.48x48 TM6 Van der Waals
(S)-Cyanopindolol F306 6.51x51 TM6 Van der Waals
(S)-Cyanopindolol F306 6.51x51 TM6 hydrophobic
(S)-Cyanopindolol F307 6.52x52 TM6 aromatic (edge-to-face)
(S)-Cyanopindolol F307 6.52x52 TM6 Van der Waals
(S)-Cyanopindolol N310 6.55x55 TM6 Van der Waals
(S)-Cyanopindolol N329 7.39x38 TM7 polar (hydrogen bond)
(S)-Cyanopindolol N329 7.39x38 TM7 polar (hydrogen bond)
(S)-Cyanopindolol N329 7.39x38 TM7 Van der Waals
(S)-Cyanopindolol Y333 7.43x42 TM7 Van der Waals

Ligands

(S)-Cyanopindolol

3D interaction viewer Download PDB file

NGL is a WebGL based 3D viewer powered by MMTF.


Residue Diagrams

V N G A V I L L V V L A M L L S M G A E 1 T S L A C A D L V M G L L V V P F G A T L 2 V C L T E I S A T V C L V D L S T W C E 3 A K V I I C T V W A I S A L V S F L P I 4 Y V F I M I L L P I Y F S I I S S A I A Y 5 G I I M G V F T L C W L P F F L V N I V 6 I P N F A S N A Y G L W N F F V F L W 7
Download: PNG | SVG
ICL1 Q R L Q ICL1ECL1 T W L W ECL1ICL2 P F R Y Q S L M ICL2ECL2 W W R D E D P Q A L K C Y Q D P G C C D F V T ECL2ICL3 G R F Y G S Q E Q P Q P P P L P Q H Q P I L G N G R A S K ICL3ECL3 R D L V ECL3N-term M G D G W L P P D C G P H N R S G G G G A T A A P T G S R Q V S N-termC-term F P R K A D R R L H A G G Q P A P L P G G F I S T L G S P E H S P G G T W S D C N G G T R G G S E S S L E E R H S K T S R S E S K M E R E K N I L A T T R F Y C T F L G N G D K A V F C T V L R I V K L F E D A T C T C P H T H K L K M K W R F K Q H Q A C-term A E L L S Q Q W E A G M S L L M A L V V L L I V A G N V L V I A A I G R T T L T N L F I T S L A C A D L V M G L L V V P F G A T L V V R G G S F L C E C W T S L D V L C V T A S I E T L C V I A I D R Y L A I T S T R A R A K V I I C T V W A I S A L V S F L P I M M H N R A Y A I A S S I I S F Y I P L L I M I F V Y L R V Y R E A K E Q I R K I D R C E R K T S R V M A M R E H K A L K T L G I I M G V F T L C W L P F F L V N I V N V F N P D W L F V F F N W L G Y A N S A F N P I I Y C R S P D F K R F R K A L L C
Download: PNG | SVG

Residue Table


GPCRdb(A)
GPCRdb(A)
β1-adrenoceptor
TM3
3x28 3.28x28 W117
3x32 3.32x32 D121
3x33 3.33x33 V122
ECL2
45x52 45.52x52 F201
TM5
5x39 5.38x39 Y207
5x40 5.39x40 A208
5x43 5.42x43 S211
5x44 5.43x44 S212
5x461 5.46x461 S215
TM6
6x48 6.48x48 W303
6x51 6.51x51 F306
6x52 6.52x52 F307
6x55 6.55x55 N310
TM7
7x38 7.39x38 N329
7x42 7.43x42 Y333