Structure information

β1-adrenoceptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

4AMI

SPECIES

Meleagris gallopavo

RESOLUTION

3.200

PREFERRED CHAIN

A

PUBLICATION DATE

May 23, 2012

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
Bucindolol W117 3.28x28 TM3 hydrophobic
Bucindolol D121 3.32x32 TM3 polar (charge-assisted hydrogen bond)
Bucindolol D121 3.32x32 TM3 polar (charge-charge)
Bucindolol V122 3.33x33 TM3 hydrophobic
Bucindolol V125 3.36x36 TM3 hydrophobic
Bucindolol C199 45.50x50 ECL2 polar (hydrogen bond with backbone)
Bucindolol F201 45.52x52 ECL2 hydrophobic
Bucindolol F306 6.51x51 TM6 hydrophobic
Bucindolol F307 6.52x52 TM6 aromatic (edge-to-face)
Bucindolol N329 7.39x38 TM7 polar (hydrogen bond)
Bucindolol N329 7.39x38 TM7 polar (charge-assisted hydrogen bond)

Ligands

Bucindolol

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Residue Diagrams

V N G A V I L L V V L A M L L S M G A E 1 T S L A C A D L V M G L L V V P F G A T L 2 V C L T E I S A T V C L V D L S T W C E 3 A K V I I C T V W A I S A L V S F L P I 4 Y V F I M I L L P I Y F S I I S S A I A Y 5 G I I M G V F T L C W L P F F L V N I V 6 I P N F A S N A Y G L W N F F V F L W 7
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ICL1 Q R L Q ICL1ECL1 T W L W ECL1ICL2 P F R Y Q S L M ICL2ECL2 W W R D E D P Q A L K C Y Q D P G C C D F V T ECL2ICL3 G R F Y G S Q E Q P Q P P P L P Q H Q P I L G N G R A S K ICL3ECL3 R D L V ECL3N-term M G D G W L P P D C G P H N R S G G G G A T A A P T G S R Q V S N-termC-term F P R K A D R R L H A G G Q P A P L P G G F I S T L G S P E H S P G G T W S D C N G G T R G G S E S S L E E R H S K T S R S E S K M E R E K N I L A T T R F Y C T F L G N G D K A V F C T V L R I V K L F E D A T C T C P H T H K L K M K W R F K Q H Q A C-term A E L L S Q Q W E A G M S L L M A L V V L L I V A G N V L V I A A I G R T T L T N L F I T S L A C A D L V M G L L V V P F G A T L V V R G G S F L C E C W T S L D V L C V T A S I E T L C V I A I D R Y L A I T S T R A R A K V I I C T V W A I S A L V S F L P I M M H N R A Y A I A S S I I S F Y I P L L I M I F V Y L R V Y R E A K E Q I R K I D R C E R K T S R V M A M R E H K A L K T L G I I M G V F T L C W L P F F L V N I V N V F N P D W L F V F F N W L G Y A N S A F N P I I Y C R S P D F K R F R K A L L C
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Residue Table


GPCRdb(A)
GPCRdb(A)
β1-adrenoceptor
TM3
3x28 3.28x28 W117
3x32 3.32x32 D121
3x33 3.33x33 V122
3x36 3.36x36 V125
ECL2
45x50 45.50x50 C199
45x52 45.52x52 F201
TM6
6x51 6.51x51 F306
6x52 6.52x52 F307
TM7
7x38 7.39x38 N329