Structure information

β1-adrenoceptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

4AMJ

SPECIES

Meleagris gallopavo

RESOLUTION

2.300

PREFERRED CHAIN

B

PUBLICATION DATE

May 23, 2012

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
(S)-Carvedilol W117 3.28x28 TM3 hydrophobic
(S)-Carvedilol D121 3.32x32 TM3 polar (charge-assisted hydrogen bond)
(S)-Carvedilol D121 3.32x32 TM3 polar (charge-charge)
(S)-Carvedilol V122 3.33x33 TM3 hydrophobic
(S)-Carvedilol V125 3.36x36 TM3 hydrophobic
(S)-Carvedilol F201 45.52x52 ECL2 aromatic (edge-to-face)
(S)-Carvedilol Y207 5.38x39 TM5 hydrophobic
(S)-Carvedilol S211 5.42x43 TM5 polar (hydrogen bond)
(S)-Carvedilol F306 6.51x51 TM6 hydrophobic
(S)-Carvedilol F307 6.52x52 TM6 aromatic (edge-to-face)
(S)-Carvedilol N329 7.39x38 TM7 polar (hydrogen bond)
(S)-Carvedilol N329 7.39x38 TM7 polar (hydrogen bond)
(S)-Carvedilol N329 7.39x38 TM7 polar (hydrogen bond)
(S)-Carvedilol N329 7.39x38 TM7 polar (hydrogen bond)
(S)-Carvedilol N329 7.39x38 TM7 polar (charge-assisted hydrogen bond)
(S)-Carvedilol Y333 7.43x42 TM7 polar (hydrogen bond)

Ligands

(S)-Carvedilol

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Residue Diagrams

V N G A V I L L V V L A M L L S M G A E 1 T S L A C A D L V M G L L V V P F G A T L 2 V C L T E I S A T V C L V D L S T W C E 3 A K V I I C T V W A I S A L V S F L P I 4 Y V F I M I L L P I Y F S I I S S A I A Y 5 G I I M G V F T L C W L P F F L V N I V 6 I P N F A S N A Y G L W N F F V F L W 7
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ICL1 Q R L Q ICL1ECL1 T W L W ECL1ICL2 P F R Y Q S L M ICL2ECL2 W W R D E D P Q A L K C Y Q D P G C C D F V T ECL2ICL3 G R F Y G S Q E Q P Q P P P L P Q H Q P I L G N G R A S K ICL3ECL3 R D L V ECL3N-term M G D G W L P P D C G P H N R S G G G G A T A A P T G S R Q V S N-termC-term F P R K A D R R L H A G G Q P A P L P G G F I S T L G S P E H S P G G T W S D C N G G T R G G S E S S L E E R H S K T S R S E S K M E R E K N I L A T T R F Y C T F L G N G D K A V F C T V L R I V K L F E D A T C T C P H T H K L K M K W R F K Q H Q A C-term A E L L S Q Q W E A G M S L L M A L V V L L I V A G N V L V I A A I G R T T L T N L F I T S L A C A D L V M G L L V V P F G A T L V V R G G S F L C E C W T S L D V L C V T A S I E T L C V I A I D R Y L A I T S T R A R A K V I I C T V W A I S A L V S F L P I M M H N R A Y A I A S S I I S F Y I P L L I M I F V Y L R V Y R E A K E Q I R K I D R C E R K T S R V M A M R E H K A L K T L G I I M G V F T L C W L P F F L V N I V N V F N P D W L F V F F N W L G Y A N S A F N P I I Y C R S P D F K R F R K A L L C
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Residue Table


GPCRdb(A)
GPCRdb(A)
β1-adrenoceptor
TM3
3x28 3.28x28 W117
3x32 3.32x32 D121
3x33 3.33x33 V122
3x36 3.36x36 V125
ECL2
45x52 45.52x52 F201
TM5
5x39 5.38x39 Y207
5x43 5.42x43 S211
TM6
6x51 6.51x51 F306
6x52 6.52x52 F307
TM7
7x38 7.39x38 N329
7x42 7.43x42 Y333