PDB
Resolution
2.8 Å
Released
Oct. 17, 2012
Receptor
Class
A
Species
Rattus norvegicus
Ligand
Function
NTS8–13
Agonist

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Ligand Amino Acid Generic Number Segment Interaction Type
NTS8–13 L55 N-term polar (hydrogen bond with backbone)
NTS8–13 L55 N-term hydrophobic
NTS8–13 D56 N-term Van der Waals
NTS8–13 V57 N-term Van der Waals
NTS8–13 F128 2.65x64 TM2 hydrophobic
NTS8–13 H132 ECL1 Van der Waals
NTS8–13 H133 ECL1 Van der Waals
NTS8–13 Y146 3.29x29 TM3 polar (hydrogen bond)
NTS8–13 R149 3.32x32 TM3 polar (charge-charge)
NTS8–13 M208 4.64x65 TM4 hydrophobic
NTS8–13 R213 ECL2 Van der Waals
NTS8–13 V224 ECL2 hydrophobic
NTS8–13 C225 45.50x50 ECL2 Van der Waals
NTS8–13 T226 45.51x51 ECL2 polar (hydrogen bond)
NTS8–13 P227 45.52x52 ECL2 Van der Waals
NTS8–13 R327 6.54x54 TM6 polar (hydrogen bond)
NTS8–13 R327 6.54x54 TM6 polar (charge-charge)
NTS8–13 R328 6.55x55 TM6 hydrophobic
NTS8–13 R328 6.55x55 TM6 polar (charge-charge)
NTS8–13 F331 6.58x58 TM6 aromatic (pi-cation)
NTS8–13 F331 6.58x58 TM6 hydrophobic
NTS8–13 F331 6.58x58 TM6 polar (hydrogen bond with backbone)
NTS8–13 S335 ECL3 Van der Waals
NTS8–13 D336 ECL3 polar (charge-charge)
NTS8–13 E337 ECL3 polar (charge-charge)
NTS8–13 W339 ECL3 hydrophobic
NTS8–13 T341 7.25x24 TM7 Van der Waals
NTS8–13 F344 7.28x27 TM7 aromatic (pi-cation)
NTS8–13 F344 7.28x27 TM7 hydrophobic
NTS8–13 Y347 7.31x30 TM7 hydrophobic
NTS8–13 Y347 7.31x30 TM7 polar (hydrogen bond)
NTS8–13 H348 7.32x31 TM7 Van der Waals
NTS8–13 Y351 7.35x34 TM7 hydrophobic

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Snake plot — Download: PNG | SVG
ICL1 K S L Q ICL1ECL1 H H P W A F ECL1ICL2 P F K A K T L M ICL2ECL2 G L Q N R S G D G T H P G G L V C T P I V D ECL2ICL3 R V C T V G T H N G L E H S T F N M T I E ICL3ECL3 S D E Q W ECL3N-term M H L N S S V P Q G T P G E P D A Q P F S G P Q S E M E A T F L A L S L S N G S G N T S E S D T A G P N S D L D V N T D N-termC-term P G W R H R R K K R P T F S R K P N S M S S N H A F S T S A T R E T L Y C-term I Y S K V L V T A I Y L A L F V V G T V G N S V T A F T L A R K S L Q S T V H Y H L G S L A L S D L L I L L L A M P V E L Y N F I W V G D A G C R G Y Y F L R D A C T Y A T A L N V A S L S V E R Y L A I C H S R S R T K K F I S A I W L A S A L L A I P M L F T M T A T V K V V I Q V N T F M S F L F P M L V I S I L N T V I A N K L T V M V H Q A A E Q G P G R V Q A L R H G V L V L R A V V I A F V V C W L P Y H V R R L M F C Y I T T F L F D F Y H Y F Y M L T N A L F Y V S S A I N P I L Y N L V S A N F L S L C F R Q V T L A C
Helix box plot — Download: PNG | SVG S N G V T G V V F L A L Y I A T V L V K 1 G S L A L S D L L I L L L A M P V E L Y N 2 S A V N L A T A Y T C A D R L F Y Y G R 3 T K K F I S A I W L A S A L L A I P M 4 N L I S I V L M P F L F S M F T N V Q I V 5 R A V V I A F V V C W L P Y H V R R L M 6 I P N I A S S V Y F L A N T L M Y F Y 7

GPCRdb(A)
GPCRdb(A)
NTS1 receptor
TM2
2x64 2.65x64 F128
TM3
3x29 3.29x29 Y146
3x32 3.32x32 R149
TM4
4x65 4.64x65 M208
ECL2
45x50 45.50x50 C225
45x51 45.51x51 T226
45x52 45.52x52 P227
TM6
6x54 6.54x54 R327
6x55 6.55x55 R328
6x58 6.58x58 F331
TM7
7x24 7.25x24 T341
7x27 7.28x27 F344
7x30 7.31x30 Y347
7x31 7.32x31 H348
7x34 7.35x34 Y351