Structure information

β2-adrenoceptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

4LDE

SPECIES

Homo sapiens

RESOLUTION

2.790

PREFERRED CHAIN

A

PUBLICATION DATE

Sept. 25, 2013

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
BI-167107 W1109 3.28x28 TM3 hydrophobic
BI-167107 D1113 3.32x32 TM3 polar (charge-charge)
BI-167107 D1113 3.32x32 TM3 polar (charge-assisted hydrogen bond)
BI-167107 V1114 3.33x33 TM3 hydrophobic
BI-167107 F1193 45.52x52 ECL2 hydrophobic
BI-167107 S1203 5.42x43 TM5 polar (hydrogen bond)
BI-167107 S1203 5.42x43 TM5 polar (hydrogen bond with backbone)
BI-167107 S1203 5.42x43 TM5 polar (hydrogen bond)
BI-167107 S1207 5.46x461 TM5 polar (hydrogen bond)
BI-167107 F1289 6.51x51 TM6 aromatic (edge-to-face)
BI-167107 F1290 6.52x52 TM6 aromatic (edge-to-face)
BI-167107 N1293 6.55x55 TM6 polar (hydrogen bond)
BI-167107 N1312 7.39x38 TM7 polar (hydrogen bond)
BI-167107 N1312 7.39x38 TM7 polar (hydrogen bond)
BI-167107 N1312 7.39x38 TM7 polar (charge-assisted hydrogen bond)

Ligands

BI-167107

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Residue Diagrams

V N G F V I A L V I L S M V I G M G V V 1 T S L A C A D L V M G A L V V P F G A A H 2 V C L T E I S A T V C L V D I S T W F E 3 A R V I I L M V W I V S G L T S F L P I 4 Y V F V M I V L P V Y F S V I S S A I A Y 5 G I I M G T F T L C W L P F F I V N I V 6 L P N F G S N V Y G I W N L L I Y V E 7
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ICL1 E R L Q ICL1ECL1 M W T F ECL1ICL2 P F K Y Q S L L ICL2ECL2 W Y R A T H Q E A I N C Y A N E T C C D F F T ECL2ICL3 G R F H V Q N L S Q V E Q D G R T G H G L R R S ICL3ECL3 D N L I ECL3N-term M G Q P G N G S A F L L A P N G S H A P D H D V T N-termC-term L R R S S L K A Y G N G Y S S N G N T G E Q S G Y H V E Q E K E N K L L C E D L P G T E D F V G H Q G T V P S D N I D S Q G R N C S T N D S L L C-term Q E R D E V W V V G M G I V M S L I V L A I V F G N V L V I T A I A K F T V T N Y F I T S L A C A D L V M G L A V V P F G A A H I L M K G N F W C E F W T S I D V L C V T A S I E T L C V I A V D R Y F A I T S T K N K A R V I I L M V W I V S G L T S F L P I Q M H N Q A Y A I A S S I V S F Y V P L V I M V F V Y S R V F Q E A K R Q L Q K I D K S E S K F C L K E H K A L K T L G I I M G T F T L C W L P F F I V N I V H V I Q R K E V Y I L L N W I G Y V N S G F N P L I Y C R S P D F Q E F R I A L L C
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Residue Table


GPCRdb(A)
GPCRdb(A)
β2-adrenoceptor
TM3
3x28 3.28x28 W109
3x32 3.32x32 D113
3x33 3.33x33 V114
ECL2
45x52 45.52x52 F193
TM5
5x43 5.42x43 S203
5x461 5.46x461 S207
TM6
6x51 6.51x51 F289
6x52 6.52x52 F290
6x55 6.55x55 N293
TM7
7x38 7.39x38 N312