Structure information

CB1 receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

5U09

SPECIES

Homo sapiens

RESOLUTION

2.600

PREFERRED CHAIN

A

PUBLICATION DATE

Dec. 7, 2016

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
Taranabant F102 N-term hydrophobic
Taranabant M103 N-term hydrophobic
Taranabant I105 N-term hydrophobic
Taranabant S123 1.39x39 TM1 polar (hydrogen bond)
Taranabant S123 1.39x39 TM1 polar (hydrogen bond)
Taranabant F170 2.57x57 TM2 aromatic (edge-to-face)
Taranabant V196 3.32x32 TM3 hydrophobic
Taranabant F268 ECL2 hydrophobic
Taranabant W356 6.48x48 TM6 hydrophobic
Taranabant A380 7.36x35 TM7 hydrophobic
Taranabant S383 7.39x38 TM7 polar (hydrogen bond)
Taranabant S383 7.39x38 TM7 polar (hydrogen bond)
Taranabant M384 7.40x39 TM7 polar (hydrogen bond)
Taranabant C386 7.42x41 TM7 polar (hydrogen bond with backbone)

Ligands

Taranabant

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Residue Diagrams

L N E L V T F T G L T L S L V A I A L Q 1 G S L A V A D L L G S V I F V Y S F I D 2 L F L S G V S A T F S A T V G G L K F L 3 A V V A F C L M W T I A I V I A V L P L 4 Y A Y V I F L L L V S T V G I W F M L Y 5 V L I L V V L I I C W G P L L A I M V Y 6 I P N V T S N L L C L M S C F A F V T 7
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ICL1 R S L R C ICL1ECL1 F H R K D ECL1ICL2 P L A Y K R I V ICL2ECL2 W N C E K L Q S V C S D I F P H I ECL2ICL3 T Q K S I I I H T S E D G K V Q V T R ICL3ECL3 K M ECL3N-term M K S I L D G L A D T T F R T I T T D L L Y V G S N D I Q Y E D I K G D M A S K L G Y F P Q K F P L T S F R G S P F Q E K M T A G D N P Q L V P A D Q V N I T E F Y N K S L S S F K E N E E N I Q C G E N F M D I E C F M V L N-termC-term S C E G T A Q P L D N S M G D S D C L H K H A N N A A S V H R A A E S C I K S T V K I A K V T M S V S T D T S A E A L C-term N P S Q Q L A I A V L S L T L G T F T V L E N L L V L C V I L H S R P S Y H F I G S L A V A D L L G S V I F V Y S F I D F H V S R N V F L F K L G G V T A S F T A S V G S L F L T A I D R Y I S I H R T R P K A V V A F C L M W T I A I V I A V L P L L G D E T Y L M F W I G V T S V L L L F I V Y A Y M Y I L W K A H S H A V R M I Q R G P D Q A R M D I R L A K T L V L I L V V L I I C W G P L L A I M V Y D V F G N K L I K T V F A F C S M L C L L N S T V N P I I Y A L R S K D F R S L R H A M F P
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Residue Table


GPCRdb(A)
GPCRdb(A)
CB1 receptor
TM1
1x39 1.39x39 S123
TM2
2x57 2.57x57 F170
TM3
3x32 3.32x32 V196
TM6
6x48 6.48x48 W356
TM7
7x35 7.36x35 A380
7x38 7.39x38 S383
7x39 7.40x39 M384
7x41 7.42x41 C386