PDB
5WS3
Resolution
2.3 Å
Released
Dec. 13, 2017
Receptor
OX2
Class
A
Species
Homo sapiens
Ligand
EMPA
Function
Antagonist
Reference
10.1016/J.STR.2017.11.005

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Ligand Amino Acid Generic Number Segment Interaction Type
EMPA P131 3.29x29 TM3 hydrophobic
EMPA F227 5.42x43 TM5 aromatic (edge-to-face)
EMPA I320 6.51x51 TM6 hydrophobic
EMPA V353 7.42x41 TM7 hydrophobic
EMPA Y354 7.43x42 TM7 hydrophobic

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Snake plot — Download: PNG | SVG
ICL1 H H M R ICL1ECL1 T W F F ECL1ICL2 P L M F K S ICL2ECL2 E C S T V F P G L A N K T T L F T V C D E R W G G E ECL2ICL3 G T S S V V Q R K W K P L Q P V S Q P R G P G Q P T K S R M S A ICL3ECL3 G M F A H T E ECL3N-term M S G T K L E D S P P C R N W S S A S E L N E T Q E P F L N P T D Y D D E E F L R Y L W R E Y L H P K E N-termC-term G V H H R Q E D R L T R G R T S T E S R K S L T T Q I S N F D N I S K L S E Q V V L T S I S T L P A A N G A G P L Q N W C-term Y E W V L I A G Y I I V F V V A L I G N V L V C V A V W K N T V T N Y F I V N L S L A D V L V T I T C L P A T L V V D I T E G Q S L C K V I P Y L Q T V S V S V S V L T L S C I A L D R W Y A I C H T A K R A R N S I V I I W I V S C I I M I P Q A I V M I Y P K M Y H I C F F L V T Y M A P L C L M V L A Y L Q I F R K L W C R Q I P V A A E I K Q I R A R R K T A R M L M I V L L V F A I C Y L P I S I L N V L K R V F D R E T V Y A W F T F S H W L V Y A N S A A N P I I Y N F L S G K F K A C C L F R E E A F S C
Helix box plot — Download: PNG | SVG V N G I L A V V F V I I Y G A I L V W E 1 V N L S L A D V L V T T I C L P A T L V V 2 C S L T L V S V S V S V T Q L Y P I V K 3 A R N S I V I I W I V S C I I M I P Q 4 Y A L V M L C L P A M Y T V L F F C I H Y 5 M I V L L V F A I C Y L P I S I L N V L 6 I P N A A S N A Y V L W H S F T F W A 7

GPCRdb(A)
GPCRdb(A)
OX2 receptor
TM3
3x29 3.29x29 P131
TM5
5x43 5.42x43 F227
TM6
6x51 6.51x51 I320
TM7
7x41 7.42x41 V353
7x42 7.43x42 Y354