Structure information

BLT1 receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

5X33

SPECIES

Cavia porcellus

RESOLUTION

3.700

PREFERRED CHAIN

A

PUBLICATION DATE

Jan. 3, 2018

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
BIIL-260 D66 2.50x50 TM2 polar (charge-assisted hydrogen bond)
BIIL-260 D66 2.50x50 TM2 polar (charge-assisted hydrogen bond)
BIIL-260 V69 2.53x53 TM2 hydrophobic
BIIL-260 F76 2.60x60 TM2 hydrophobic
BIIL-260 L80 2.64x64 TM2 hydrophobic
BIIL-260 H96 3.29x29 TM3 polar (hydrogen bond)
BIIL-260 C99 3.32x32 TM3 hydrophobic
BIIL-260 S106 3.39x39 TM3 polar (hydrogen bond)
BIIL-260 W236 6.48x48 TM6 aromatic (edge-to-face)
BIIL-260 I270 7.39x38 TM7 hydrophobic
BIIL-260 F274 7.43x42 TM7 hydrophobic
BIIL-260 S276 7.45x45 TM7 polar (hydrogen bond)

Ligands

BIIL-260

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Residue Diagrams

T N G P L G V V M S V S L L I M A L L P 1 L N L A L A D L A V L L T A P F F L H F 2 A T I L L V S A Y M S V G C I Y H C L R 3 A R W L L V G I W G A S F L L A T P V 4 Y S A V V I L F P V V F G T F A E F L L H 5 V I I I L A F A A F W L P Y H V V D L V 6 L P N V S S S L F A L A I C V K R A N 7
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ICL1 M R K R ICL1ECL1 T W S F ECL1ICL2 P F L S Q K V R ICL2ECL2 K V V K L T N E T D L C L A V Y P ECL2ICL3 R F H R ICL3ECL3 G T L D Q ECL3N-term M D R N T T T R A A S P S G S N N-termC-term G V G F V A K L L E A T G S E A F S T R R G G T L A Q T V K G I P M A P E P G A S G S L D G L K Q S E S D C-term T F I P L L A M I L L S V S M V V G L P G N T F V V W S I L K R S V T A L M V L N L A L A D L A V L L T A P F F L H F L T W H K L A G C R L C H Y I C G V S M Y A S V L L I T A M S L D R S L A V A S T K T A A R W L L V G I W G A S F L L A T P V L A F R S D R H K A F H L L F E A F T G F V V P F L I V V A S Y A D I S R R L R V R R R R T G R L V V I I I L A F A A F W L P Y H V V D L V E G S R V L A S K Q Q L R N A R K V C I A L A F L S S S V N P L L Y A C A G G G L L R S A
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Residue Table


GPCRdb(A)
GPCRdb(A)
BLT1 receptor
TM2
2x50 2.50x50 D66
2x53 2.53x53 V69
2x60 2.60x60 F76
2x64 2.64x64 L80
TM3
3x29 3.29x29 H96
3x32 3.32x32 C99
3x39 3.39x39 S106
TM6
6x48 6.48x48 W236
TM7
7x38 7.39x38 I270
7x42 7.43x42 F274
7x45 7.45x45 S276