Structure information

Y1 receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

5ZBQ

SPECIES

Homo sapiens

RESOLUTION

2.700

PREFERRED CHAIN

A

PUBLICATION DATE

April 25, 2018

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
UR-MK299 L26 N-term hydrophobic
UR-MK299 I124 3.36x36 TM3 hydrophobic
UR-MK299 F173 4.60x61 TM4 hydrophobic
UR-MK299 T212 5.39x40 TM5 polar (hydrogen bond)
UR-MK299 T212 5.39x40 TM5 polar (hydrogen bond)
UR-MK299 Q219 5.46x461 TM5 polar (hydrogen bond)
UR-MK299 W276 6.48x48 TM6 hydrophobic
UR-MK299 L279 6.51x51 TM6 hydrophobic
UR-MK299 F282 6.54x54 TM6 aromatic (edge-to-face)
UR-MK299 N283 6.55x55 TM6 polar (hydrogen bond)
UR-MK299 N283 6.55x55 TM6 polar (hydrogen bond)
UR-MK299 N283 6.55x55 TM6 polar (hydrogen bond)
UR-MK299 F286 6.58x58 TM6 hydrophobic
UR-MK299 D287 6.59x59 TM6 polar (charge-assisted hydrogen bond)
UR-MK299 D287 6.59x59 TM6 polar (charge-assisted hydrogen bond)
UR-MK299 D287 6.59x59 TM6 polar (charge-assisted hydrogen bond)
UR-MK299 F302 7.35x34 TM7 hydrophobic

Ligands

UR-MK299

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Residue Diagrams

L N G S V G L I I V A G Y A L A L T F I 1 V N L S F S D L L V A M I C L P F T F V Y 2 L V L S F I S V T I S V C Q V F P N L K 3 A Y V G I A V I W V L A V A S S L P F 4 Y C I F I F C L P G F Y Q L V L L L T T Y 5 L S I V V A F A V C W L P L T I F N T V 6 I P N V C T S I M A T L H C L L F L L 7
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ICL1 K E M R ICL1ECL1 H W V F ECL1ICL2 P R G W R P ICL2ECL2 V M T D E P F Q N V T L D A Y K D K Y V C F D Q F P ECL2ICL3 K M R ICL3ECL3 H Q I I A ECL3N-term M N S T L F S Q V E N H S V H S N F S E K N A Q L L A F E N D D C H L N-termC-term N F C D F R S R D D D Y E T I A M S T M H T D V S K T S L K Q A S P V A F K K I N N N D D N E K I C-term P L A M I F T L A L A Y G A V I I L G V S G N L A L I I I I L K Q N V T N I L I V N L S F S D L L V A I M C L P F T F V Y T L M D G E A M C K L N P F V Q C V S I T V S I F S L V L I A V E R H Q L I I N N N R H A Y V G I A V I W V L A V A S S L P F L I Y Q S D S H R L S Y T T L L L V L Q Y F G P L C F I F I C Y F K I Y I R L K R R N N M M D D N K Y R S S E T K R I N I M L L S I V V A F A V C W L P L T I F N T V F D W N T C N H N L L F L L C H L T A M I S T C V N P I F Y G F L N K N L Q F F Q R D F F
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Residue Table


GPCRdb(A)
GPCRdb(A)
Y1 receptor
TM3
3x36 3.36x36 I124
TM4
4x61 4.60x61 F173
TM5
5x40 5.39x40 T212
5x461 5.46x461 Q219
TM6
6x48 6.48x48 W276
6x51 6.51x51 L279
6x54 6.54x54 F282
6x55 6.55x55 N283
6x58 6.58x58 F286
6x59 6.59x59 D287
TM7
7x34 7.35x34 F302