Structure information

PAF receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

5ZKQ

SPECIES

Homo sapiens

RESOLUTION

2.900

PREFERRED CHAIN

B

PUBLICATION DATE

June 20, 2018

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
ABT-491 Y22 1.39x39 TM1 polar (hydrogen bond)
ABT-491 W73 2.60x60 TM2 aromatic (face-to-face)
ABT-491 Y77 2.64x64 TM2 polar (hydrogen bond)
ABT-491 F97 3.32x32 TM3 aromatic (face-to-edge)
ABT-491 F98 3.33x33 TM3 hydrophobic
ABT-491 F152 4.60x60 TM4 aromatic (edge-to-face)
ABT-491 F174 45.51x51 ECL2 hydrophobic
ABT-491 Y177 ECL2 hydrophobic
ABT-491 H188 5.40x40 TM5 polar (hydrogen bond)
ABT-491 Q252 6.55x55 TM6 polar (hydrogen bond)
ABT-491 L279 7.39x38 TM7 hydrophobic

Ligands

ABT-491

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Residue Diagrams

G N A I V G L V F I I S Y V I P F L T Y 1 V N L T M A D M L F L I T L P L W I V Y 2 V G L F A V S C Y T N I F F L C G A V N 3 G I S L S L V I W V A I V G A A S Y F L 4 N C F L I I L F V L F F S F V I F I H I 5 V C T V L A V F I I C F V P H H V V Q L P 6 V P D L V C N T S L L C L T V Q H A D 7
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ICL1 P C K K ICL1ECL1 G N W I L ECL1ICL2 P I K T A Q A N ICL2ECL2 D S T N T V P D S A G S G N V T R C F E H Y E K G ECL2ICL3 P V Q Q ICL3ECL3 F Q ECL3N-term M E P H D S S H M N-termC-term S R K C S R A T T D T V T E V V V P F N Q I P G N S L K N C-term D S E F R Y T L F P I V Y S I I F V L G V I A N G Y V L W V F A R L Y F N E I K I F M V N L T M A D M L F L I T L P L W I V Y Y Q N Q P K F L C N V A G C L F F I N T Y C S V A F L G V I T Y N R F Q A V T R T R K R G I S L S L V I W V A I V G A A S Y F L I L S V P V L I I H I F I V F S F F L V F L I I L F C N L V I I R T L L M Q Q R N A E V K R R A L W M V C T V L A V F I I C F V P H H V V Q L P W T L A E L G D S K F H Q A I N D A H Q V T L C L L S T N C V L D P V I Y C F L T K K F R K K F Y H L T E S M R S
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Residue Table


GPCRdb(A)
GPCRdb(A)
PAF receptor
TM1
1x39 1.39x39 Y22
TM2
2x60 2.60x60 W73
2x64 2.64x64 Y77
TM3
3x32 3.32x32 F97
3x33 3.33x33 F98
TM4
4x60 4.60x60 F152
ECL2
45x51 45.51x51 F174
TM5
5x40 5.40x40 H188
TM6
6x55 6.55x55 Q252
TM7
7x38 7.39x38 L279