Structure information

C5a1 receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

6C1Q

SPECIES

Homo sapiens

RESOLUTION

2.900

PREFERRED CHAIN

B

PUBLICATION DATE

May 30, 2018

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
NDT 9513727 L211 3.41x41 TM3 hydrophobic
NDT 9513727 A214 3.44x44 TM3 hydrophobic
NDT 9513727 V245 4.48x48 TM4 hydrophobic
NDT 9513727 L249 4.52x52 TM4 hydrophobic
NDT 9513727 L295 5.45x46 TM5 polar (hydrogen bond with backbone)
NDT 9513727 W299 5.49x49 TM5 polar (hydrogen bond)
NDT 9513727 P300 5.50x50 TM5 hydrophobic

Ligands

NDT 9513727

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Residue Diagrams

A N G L V G V L F V V A F I V L A L I D 1 L N L A V A D F L S C L A L P I L F T S 2 T A L L L I S A Y M N L L I L S P L I S 3 A W I A C A V A W G L A L L L T I P S 4 Y C I T L T L L P W L F G L V L R V I A V 5 V A V V A S F F I F W L P Y Q V T G I M 6 I P N I C C N I Y A F S V C L S D L K 7
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ICL1 A K R ICL1ECL1 H H W P F ECL1ICL2 P I W C Q N F R ICL2ECL2 V V R E E Y F P P K V L C G V D Y S H ECL2ICL3 R A T R S ICL3ECL3 E P S ECL3N-term M D S F N Y T T P D Y G H Y D D K D T L D L N T P V D K T S N T L N-termC-term G R L R K S L P S L L R N V L T E E S V V R E S K S F T R S T V D T M A Q K T Q A V C-term R V P D I L A L V I F A V V F L V G V L G N A L V V W V T A F E T I N A I W F L N L A V A D F L S C L A L P I L F T S I V Q H G G A A C S I L P S L I L L N M Y A S I L L L A T I S A D R F L L V F K G A G L A W I A C A V A W G L A L L L T I P S F L Y R D K R R E R A V A I V R L V L G F L W P L L T L T I C Y T F I L L R T W S R T K T L K V V V A V V A S F F I F W L P Y Q V T G I M M S F L S P T F L L L K K L D S L C V S F A Y I N C C I N P I I Y V V A G Q G F Q
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Residue Table


GPCRdb(A)
GPCRdb(A)
C5a1 receptor
TM3
3x41 3.41x41 L125
3x44 3.44x44 A128
TM4
4x48 4.48x48 V159
4x52 4.52x52 L163
TM5
5x46 5.45x46 L209
5x49 5.49x49 W213
5x50 5.50x50 P214