Structure information

β1-adrenoceptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

6H7J

SPECIES

Meleagris gallopavo

RESOLUTION

2.800

PREFERRED CHAIN

A

PUBLICATION DATE

Oct. 17, 2018

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
LEVISOPRENALINE D121 3.32x32 TM3 polar (charge-assisted hydrogen bond)
LEVISOPRENALINE D121 3.32x32 TM3 polar (charge-charge)
LEVISOPRENALINE V122 3.33x33 TM3 hydrophobic
LEVISOPRENALINE F201 45.52x52 ECL2 hydrophobic
LEVISOPRENALINE S211 5.42x43 TM5 polar (hydrogen bond)
LEVISOPRENALINE S211 5.42x43 TM5 polar (hydrogen bond with backbone)
LEVISOPRENALINE S211 5.42x43 TM5 polar (hydrogen bond)
LEVISOPRENALINE S215 5.46x461 TM5 polar (hydrogen bond)
LEVISOPRENALINE F306 6.51x51 TM6 aromatic (edge-to-face)
LEVISOPRENALINE F307 6.52x52 TM6 aromatic (edge-to-face)
LEVISOPRENALINE N310 6.55x55 TM6 polar (hydrogen bond)
LEVISOPRENALINE N329 7.39x38 TM7 polar (charge-assisted hydrogen bond)

Ligands

LEVISOPRENALINE

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Residue Diagrams

V N G A V I L L V V L A M L L S M G A E 1 T S L A C A D L V M G L L V V P F G A T L 2 V C L T E I S A T V C L V D L S T W C E 3 A K V I I C T V W A I S A L V S F L P I 4 Y V F I M I L L P I Y F S I I S S A I A Y 5 G I I M G V F T L C W L P F F L V N I V 6 I P N F A S N A Y G L W N F F V F L W 7
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ICL1 Q R L Q ICL1ECL1 T W L W ECL1ICL2 P F R Y Q S L M ICL2ECL2 W W R D E D P Q A L K C Y Q D P G C C D F V T ECL2ICL3 G R F Y G S Q E Q P Q P P P L P Q H Q P I L G N G R A S K ICL3ECL3 R D L V ECL3N-term M G D G W L P P D C G P H N R S G G G G A T A A P T G S R Q V S N-termC-term F P R K A D R R L H A G G Q P A P L P G G F I S T L G S P E H S P G G T W S D C N G G T R G G S E S S L E E R H S K T S R S E S K M E R E K N I L A T T R F Y C T F L G N G D K A V F C T V L R I V K L F E D A T C T C P H T H K L K M K W R F K Q H Q A C-term A E L L S Q Q W E A G M S L L M A L V V L L I V A G N V L V I A A I G R T T L T N L F I T S L A C A D L V M G L L V V P F G A T L V V R G G S F L C E C W T S L D V L C V T A S I E T L C V I A I D R Y L A I T S T R A R A K V I I C T V W A I S A L V S F L P I M M H N R A Y A I A S S I I S F Y I P L L I M I F V Y L R V Y R E A K E Q I R K I D R C E R K T S R V M A M R E H K A L K T L G I I M G V F T L C W L P F F L V N I V N V F N P D W L F V F F N W L G Y A N S A F N P I I Y C R S P D F K R F R K A L L C
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Residue Table


GPCRdb(A)
GPCRdb(A)
β1-adrenoceptor
TM3
3x32 3.32x32 D121
3x33 3.33x33 V122
ECL2
45x52 45.52x52 F201
TM5
5x43 5.42x43 S211
5x461 5.46x461 S215
TM6
6x51 6.51x51 F306
6x52 6.52x52 F307
6x55 6.55x55 N310
TM7
7x38 7.39x38 N329