Structure information

β1-adrenoceptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

6H7N

SPECIES

Meleagris gallopavo

RESOLUTION

2.500

PREFERRED CHAIN

A

REFERENCE

10.1101/436212

PUBLICATION DATE

Oct. 17, 2018

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
(S)-Xamoterol W117 3.28x28 TM3 hydrophobic
(S)-Xamoterol D121 3.32x32 TM3 polar (charge-assisted hydrogen bond)
(S)-Xamoterol V122 3.33x33 TM3 Van der Waals
(S)-Xamoterol V122 3.33x33 TM3 hydrophobic
(S)-Xamoterol V125 3.36x36 TM3 Van der Waals
(S)-Xamoterol V125 3.36x36 TM3 hydrophobic
(S)-Xamoterol T126 3.37x37 TM3 Van der Waals
(S)-Xamoterol F201 45.52x52 ECL2 Van der Waals
(S)-Xamoterol F201 45.52x52 ECL2 hydrophobic
(S)-Xamoterol S211 5.42x43 TM5 Van der Waals
(S)-Xamoterol S211 5.42x43 TM5 polar (hydrogen bond with backbone)
(S)-Xamoterol S215 5.46x461 TM5 polar (hydrogen bond)
(S)-Xamoterol W303 6.48x48 TM6 Van der Waals
(S)-Xamoterol W303 6.48x48 TM6 hydrophobic
(S)-Xamoterol F306 6.51x51 TM6 hydrophobic
(S)-Xamoterol F306 6.51x51 TM6 Van der Waals
(S)-Xamoterol F307 6.52x52 TM6 Van der Waals
(S)-Xamoterol F307 6.52x52 TM6 aromatic (edge-to-face)
(S)-Xamoterol V326 7.36x35 TM7 Van der Waals
(S)-Xamoterol V326 7.36x35 TM7 hydrophobic
(S)-Xamoterol N329 7.39x38 TM7 polar (hydrogen bond)
(S)-Xamoterol N329 7.39x38 TM7 polar (hydrogen bond)
(S)-Xamoterol N329 7.39x38 TM7 polar (hydrogen bond)
(S)-Xamoterol W330 7.40x39 TM7 polar (hydrogen bond)
(S)-Xamoterol W330 7.40x39 TM7 Van der Waals
(S)-Xamoterol Y333 7.43x42 TM7 polar (hydrogen bond)

Ligands

(S)-Xamoterol

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Residue Diagrams

V N G A V I L L V V L A M L L S M G A E 1 T S L A C A D L V M G L L V V P F G A T L 2 V C L T E I S A T V C L V D L S T W C E 3 A K V I I C T V W A I S A L V S F L P I 4 Y V F I M I L L P I Y F S I I S S A I A Y 5 G I I M G V F T L C W L P F F L V N I V 6 I P N F A S N A Y G L W N F F V F L W 7
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ICL1 Q R L Q ICL1ECL1 T W L W ECL1ICL2 P F R Y Q S L M ICL2ECL2 W W R D E D P Q A L K C Y Q D P G C C D F V T ECL2ICL3 G R F Y G S Q E Q P Q P P P L P Q H Q P I L G N G R A S K ICL3ECL3 R D L V ECL3N-term M G D G W L P P D C G P H N R S G G G G A T A A P T G S R Q V S N-termC-term F P R K A D R R L H A G G Q P A P L P G G F I S T L G S P E H S P G G T W S D C N G G T R G G S E S S L E E R H S K T S R S E S K M E R E K N I L A T T R F Y C T F L G N G D K A V F C T V L R I V K L F E D A T C T C P H T H K L K M K W R F K Q H Q A C-term A E L L S Q Q W E A G M S L L M A L V V L L I V A G N V L V I A A I G R T T L T N L F I T S L A C A D L V M G L L V V P F G A T L V V R G G S F L C E C W T S L D V L C V T A S I E T L C V I A I D R Y L A I T S T R A R A K V I I C T V W A I S A L V S F L P I M M H N R A Y A I A S S I I S F Y I P L L I M I F V Y L R V Y R E A K E Q I R K I D R C E R K T S R V M A M R E H K A L K T L G I I M G V F T L C W L P F F L V N I V N V F N P D W L F V F F N W L G Y A N S A F N P I I Y C R S P D F K R F R K A L L C
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Residue Table


GPCRdb(A)
GPCRdb(A)
β1-adrenoceptor
TM3
3x28 3.28x28 W117
3x32 3.32x32 D121
3x33 3.33x33 V122
3x36 3.36x36 V125
3x37 3.37x37 T126
ECL2
45x52 45.52x52 F201
TM5
5x43 5.42x43 S211
5x461 5.46x461 S215
TM6
6x48 6.48x48 W303
6x51 6.51x51 F306
6x52 6.52x52 F307
TM7
7x35 7.36x35 V326
7x38 7.39x38 N329
7x39 7.40x39 W330
7x42 7.43x42 Y333