Structure information

β1-adrenoceptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

6IBL

SPECIES

Meleagris gallopavo

RESOLUTION

2.700

PREFERRED CHAIN

A

REFERENCE

PUBLICATION DATE

Jan. 9, 2019

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
Formoterol W117 3.28x28 TM3 hydrophobic
Formoterol D121 3.32x32 TM3 polar (charge-assisted hydrogen bond)
Formoterol D121 3.32x32 TM3 polar (charge-charge)
Formoterol V122 3.33x33 TM3 hydrophobic
Formoterol F201 45.52x52 ECL2 hydrophobic
Formoterol S211 5.42x43 TM5 polar (hydrogen bond with backbone)
Formoterol S211 5.42x43 TM5 polar (hydrogen bond)
Formoterol S211 5.42x43 TM5 polar (hydrogen bond)
Formoterol S215 5.46x461 TM5 polar (hydrogen bond)
Formoterol F306 6.51x51 TM6 aromatic (edge-to-face)
Formoterol F307 6.52x52 TM6 aromatic (edge-to-face)
Formoterol N310 6.55x55 TM6 polar (hydrogen bond)
Formoterol N329 7.39x38 TM7 polar (hydrogen bond)
Formoterol N329 7.39x38 TM7 polar (charge-assisted hydrogen bond)
Formoterol Y333 7.43x42 TM7 polar (charge-assisted hydrogen bond)

Ligands

Formoterol

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Residue Diagrams

V N G A V I L L V V L A M L L S M G A E 1 T S L A C A D L V M G L L V V P F G A T L 2 V C L T E I S A T V C L V D L S T W C E 3 A K V I I C T V W A I S A L V S F L P I 4 Y V F I M I L L P I Y F S I I S S A I A Y 5 G I I M G V F T L C W L P F F L V N I V 6 I P N F A S N A Y G L W N F F V F L W 7
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ICL1 Q R L Q ICL1ECL1 T W L W ECL1ICL2 P F R Y Q S L M ICL2ECL2 W W R D E D P Q A L K C Y Q D P G C C D F V T ECL2ICL3 G R F Y G S Q E Q P Q P P P L P Q H Q P I L G N G R A S K ICL3ECL3 R D L V ECL3N-term M G D G W L P P D C G P H N R S G G G G A T A A P T G S R Q V S N-termC-term F P R K A D R R L H A G G Q P A P L P G G F I S T L G S P E H S P G G T W S D C N G G T R G G S E S S L E E R H S K T S R S E S K M E R E K N I L A T T R F Y C T F L G N G D K A V F C T V L R I V K L F E D A T C T C P H T H K L K M K W R F K Q H Q A C-term A E L L S Q Q W E A G M S L L M A L V V L L I V A G N V L V I A A I G R T T L T N L F I T S L A C A D L V M G L L V V P F G A T L V V R G G S F L C E C W T S L D V L C V T A S I E T L C V I A I D R Y L A I T S T R A R A K V I I C T V W A I S A L V S F L P I M M H N R A Y A I A S S I I S F Y I P L L I M I F V Y L R V Y R E A K E Q I R K I D R C E R K T S R V M A M R E H K A L K T L G I I M G V F T L C W L P F F L V N I V N V F N P D W L F V F F N W L G Y A N S A F N P I I Y C R S P D F K R F R K A L L C
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Residue Table


GPCRdb(A)
GPCRdb(A)
β1-adrenoceptor
TM3
3x28 3.28x28 W117
3x32 3.32x32 D121
3x33 3.33x33 V122
ECL2
45x52 45.52x52 F201
TM5
5x43 5.42x43 S211
5x461 5.46x461 S215
TM6
6x51 6.51x51 F306
6x52 6.52x52 F307
6x55 6.55x55 N310
TM7
7x38 7.39x38 N329
7x42 7.43x42 Y333