Structure information

CB1 receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

6KQI

SPECIES

Homo sapiens

RESOLUTION

3.250

PREFERRED CHAIN

A

PUBLICATION DATE

Oct. 23, 2019

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
CP55940 F170 2.57x57 TM2 aromatic (edge-to-face)
CP55940 S173 2.60x60 TM2 polar (hydrogen bond)
CP55940 F174 2.61x61 TM2 hydrophobic
CP55940 F177 2.64x64 TM2 hydrophobic
CP55940 L193 3.29x29 TM3 hydrophobic
ORG27569 C238 4.47x47 TM4 hydrophobic
ORG27569 W241 4.50x50 TM4 hydrophobic
ORG27569 I245 4.54x54 TM4 hydrophobic
CP55940 I267 ECL2 polar (hydrogen bond with backbone)
CP55940 F268 ECL2 aromatic (edge-to-face)
CP55940 W279 5.43x43 TM5 hydrophobic
CP55940 W356 6.48x48 TM6 hydrophobic
CP55940 F379 7.35x34 TM7 hydrophobic
CP55940 S383 7.39x38 TM7 polar (hydrogen bond)

Ligands

CP55940

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ORG27569

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Residue Diagrams

L N E L V T F T G L T L S L V A I A L Q 1 G S L A V A D L L G S V I F V Y S F I D 2 L F L S G V S A T F S A T V G G L K F L 3 A V V A F C L M W T I A I V I A V L P L 4 Y A Y V I F L L L V S T V G I W F M L Y 5 V L I L V V L I I C W G P L L A I M V Y 6 I P N V T S N L L C L M S C F A F V T 7
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ICL1 R S L R C ICL1ECL1 F H R K D ECL1ICL2 P L A Y K R I V ICL2ECL2 W N C E K L Q S V C S D I F P H I ECL2ICL3 T Q K S I I I H T S E D G K V Q V T R ICL3ECL3 K M ECL3N-term M K S I L D G L A D T T F R T I T T D L L Y V G S N D I Q Y E D I K G D M A S K L G Y F P Q K F P L T S F R G S P F Q E K M T A G D N P Q L V P A D Q V N I T E F Y N K S L S S F K E N E E N I Q C G E N F M D I E C F M V L N-termC-term S C E G T A Q P L D N S M G D S D C L H K H A N N A A S V H R A A E S C I K S T V K I A K V T M S V S T D T S A E A L C-term N P S Q Q L A I A V L S L T L G T F T V L E N L L V L C V I L H S R P S Y H F I G S L A V A D L L G S V I F V Y S F I D F H V S R N V F L F K L G G V T A S F T A S V G S L F L T A I D R Y I S I H R T R P K A V V A F C L M W T I A I V I A V L P L L G D E T Y L M F W I G V T S V L L L F I V Y A Y M Y I L W K A H S H A V R M I Q R G P D Q A R M D I R L A K T L V L I L V V L I I C W G P L L A I M V Y D V F G N K L I K T V F A F C S M L C L L N S T V N P I I Y A L R S K D F R S L R H A M F P
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Residue Table


GPCRdb(A)
GPCRdb(A)
CB1 receptor
TM2
2x57 2.57x57 F170
2x60 2.60x60 S173
2x61 2.61x61 F174
2x64 2.64x64 F177
TM3
3x29 3.29x29 L193
TM4
4x47 4.47x47 C238
4x50 4.50x50 W241
4x54 4.54x54 I245
TM5
5x43 5.43x43 W279
TM6
6x48 6.48x48 W356
TM7
7x34 7.35x34 F379
7x38 7.39x38 S383